Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15455

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,349,069	+				-0.1
3,349,069	+				-0.7
3,349,069	+				+0.8
3,349,069	+				-0.8
3,349,069	+				-0.8
3,349,069	+				-1.0
3,349,069	+				+0.4
3,349,069	+				-2.7
3,349,070	-				-0.4
3,349,070	-				-0.8
3,349,074	+				+0.6
3,349,074	+				-1.1
3,349,074	+				-1.2
3,349,074	+				-0.1
3,349,074	+				-1.5
3,349,074	+				+0.3
3,349,074	+				-0.5
3,349,074	+				+0.3
3,349,074	+				+0.9
3,349,074	+				+0.5
3,349,075	-				+0.3
3,349,075	-				+1.0
3,349,075	-				-0.2
3,349,075	-				-0.8
3,349,075	-				-1.3
3,349,075	-				+0.1
3,349,075	-				+0.3
3,349,075	-				+0.8
3,349,075	-				-1.3
3,349,075	-				-0.7
3,349,075	-				+0.5
3,349,078	+				-0.2
3,349,078	+				-0.6
3,349,078	+				-0.6
3,349,079	-				-0.5
3,349,142	+				-1.3
3,349,143	-				-0.3
3,349,241	-		DZA65_RS15445	0.43	-0.2
3,349,353	+		DZA65_RS15445	0.84	-0.5
3,349,353	+		DZA65_RS15445	0.84	-0.5
3,349,353	+		DZA65_RS15445	0.84	-1.1
3,349,353	+		DZA65_RS15445	0.84	-2.5
3,349,353	+		DZA65_RS15445	0.84	+0.5
3,349,353	+				+1.5
3,349,353	+		DZA65_RS15445	0.84	+0.5
3,349,353	+		DZA65_RS15445	0.84	-0.8
3,349,354	-		DZA65_RS15445	0.84	+0.1
3,349,354	-		DZA65_RS15445	0.84	-1.1
3,349,354	-		DZA65_RS15445	0.84	-0.8
3,349,451	-				-0.2
3,349,487	-				-0.1
3,349,509	-		DZA65_RS15450	0.13	-1.3
3,349,546	+		DZA65_RS15450	0.20	+0.4
3,349,546	+		DZA65_RS15450	0.20	+1.0
3,349,546	+		DZA65_RS15450	0.20	-3.0
3,349,546	+		DZA65_RS15450	0.20	-0.5
3,349,546	+		DZA65_RS15450	0.20	-1.3
3,349,546	+		DZA65_RS15450	0.20	+0.3
3,349,546	+		DZA65_RS15450	0.20	-0.2
3,349,546	+		DZA65_RS15450	0.20	+0.8
3,349,547	-		DZA65_RS15450	0.20	-1.1
3,349,547	-		DZA65_RS15450	0.20	-0.8
3,349,547	-		DZA65_RS15450	0.20	-0.2
3,349,632	-		DZA65_RS15450	0.35	+1.5
3,349,632	-		DZA65_RS15450	0.35	-0.7
3,349,632	-		DZA65_RS15450	0.35	-0.3
3,349,738	+		DZA65_RS15450	0.54	-0.9
3,349,738	+		DZA65_RS15450	0.54	-0.9
3,349,819	+		DZA65_RS15450	0.68	+0.7
3,349,820	-		DZA65_RS15450	0.68	-0.1
3,349,820	-		DZA65_RS15450	0.68	+0.7
3,349,850	-		DZA65_RS15450	0.74	-1.3
3,349,876	+		DZA65_RS15450	0.78	-1.6
3,349,877	-		DZA65_RS15450	0.79	-0.4
3,349,877	-		DZA65_RS15450	0.79	-0.2
3,349,877	-		DZA65_RS15450	0.79	+0.1
3,349,877	-		DZA65_RS15450	0.79	-1.1
3,349,880	+		DZA65_RS15450	0.79	+0.5
3,349,881	-		DZA65_RS15450	0.79	-1.2
3,349,881	-		DZA65_RS15450	0.79	-0.2
3,349,881	-		DZA65_RS15450	0.79	-0.3
3,349,881	-		DZA65_RS15450	0.79	-1.1
3,349,916	-		DZA65_RS15450	0.85	-2.6
3,349,916	-		DZA65_RS15450	0.85	-0.1
3,349,960	+				-2.1
3,349,998	+				-0.6
3,349,999	-				-2.1
3,349,999	-				+1.0
3,349,999	-				+0.3
3,350,003	+				+0.5
3,350,003	+				-1.0
3,350,003	+				-1.0
3,350,003	+				+0.1
3,350,003	+				-0.3
3,350,003	+				+0.1
3,350,003	+				-0.3
3,350,003	+				-0.5
3,350,003	+				-0.3
3,350,004	-				-0.1
3,350,004	-				-0.1
3,350,004	-				-1.6
3,350,004	-				+0.5
3,350,004	-				+1.0
3,350,004	-				-2.3
3,350,004	-				-1.1
3,350,004	-				-1.3
3,350,187	-		DZA65_RS15455	0.24	-1.9
3,350,230	+		DZA65_RS15455	0.29	-1.3
3,350,236	+		DZA65_RS15455	0.30	+0.4
3,350,251	+		DZA65_RS15455	0.32	-0.3
3,350,252	-		DZA65_RS15455	0.32	-0.4
3,350,298	+		DZA65_RS15455	0.38	-0.2
3,350,298	+		DZA65_RS15455	0.38	-2.6
3,350,298	+		DZA65_RS15455	0.38	-0.2
3,350,298	+		DZA65_RS15455	0.38	+0.7
3,350,298	+		DZA65_RS15455	0.38	-0.3
3,350,298	+		DZA65_RS15455	0.38	-0.9
3,350,298	+		DZA65_RS15455	0.38	-0.3
3,350,298	+		DZA65_RS15455	0.38	-0.1
3,350,298	+		DZA65_RS15455	0.38	+0.5
3,350,299	-		DZA65_RS15455	0.38	-0.2
3,350,299	-		DZA65_RS15455	0.38	+0.8
3,350,299	-		DZA65_RS15455	0.38	-1.3
3,350,310	+		DZA65_RS15455	0.39	-0.8
3,350,443	-		DZA65_RS15455	0.56	-0.7
3,350,479	+		DZA65_RS15455	0.60	-0.3
3,350,480	-		DZA65_RS15455	0.60	-1.1
3,350,565	-		DZA65_RS15455	0.71	-0.7
3,350,598	+		DZA65_RS15455	0.75	-2.7
3,350,598	+		DZA65_RS15455	0.75	-2.6
3,350,599	-		DZA65_RS15455	0.75	-0.7
3,350,599	-		DZA65_RS15455	0.75	+1.5
3,350,756	+				-0.6
3,350,756	+				-0.4
3,350,756	+				+0.2
3,350,757	-				+0.5
3,350,757	-				-0.9
3,350,802	+				+0.8
3,350,803	-				-0.9
3,350,812	+				+0.5
3,350,812	+				-1.8
3,350,812	+				-0.8
3,350,812	+				-0.6
3,350,813	-				+0.5
3,350,813	-				+0.1
3,350,813	-				-0.7
3,350,813	-				-0.1
3,350,813	-				-1.3
3,350,829	-				+1.2
3,351,039	+		DZA65_RS15460	0.29	-0.6
3,351,039	+		DZA65_RS15460	0.29	-0.5
3,351,039	+		DZA65_RS15460	0.29	+1.1
3,351,039	+		DZA65_RS15460	0.29	-0.8
3,351,039	+		DZA65_RS15460	0.29	+0.5
3,351,040	-		DZA65_RS15460	0.29	-1.3
3,351,040	-		DZA65_RS15460	0.29	+1.1
3,351,040	-		DZA65_RS15460	0.29	-0.4
3,351,121	+		DZA65_RS15460	0.39	-0.1
3,351,227	+		DZA65_RS15460	0.51	-1.9
3,351,227	+		DZA65_RS15460	0.51	-1.7
3,351,227	+		DZA65_RS15460	0.51	-1.5
3,351,227	+		DZA65_RS15460	0.51	+0.1
3,351,228	-		DZA65_RS15460	0.51	-1.5
3,351,271	+		DZA65_RS15460	0.57	-0.9
3,351,271	+		DZA65_RS15460	0.57	+2.3
3,351,377	+		DZA65_RS15460	0.69	-0.3
3,351,377	+		DZA65_RS15460	0.69	+0.5
3,351,377	+		DZA65_RS15460	0.69	-0.5
3,351,377	+		DZA65_RS15460	0.69	-0.6
3,351,378	-		DZA65_RS15460	0.69	+0.5
3,351,378	-		DZA65_RS15460	0.69	-2.5
3,351,378	-		DZA65_RS15460	0.69	-1.8
3,351,378	-		DZA65_RS15460	0.69	-1.8
3,351,378	-		DZA65_RS15460	0.69	+0.5
3,351,378	-		DZA65_RS15460	0.69	-1.8
3,351,378	-		DZA65_RS15460	0.69	-1.1
3,351,378	-		DZA65_RS15460	0.69	-0.9
3,351,430	-		DZA65_RS15460	0.76	-1.5
3,351,430	-		DZA65_RS15460	0.76	-0.5
3,351,430	-		DZA65_RS15460	0.76	-0.7
3,351,459	+		DZA65_RS15460	0.79	-1.1
3,351,459	+				-0.1
3,351,499	+		DZA65_RS15460	0.84	-0.6
3,351,499	+		DZA65_RS15460	0.84	-0.1
3,351,500	-		DZA65_RS15460	0.84	+0.5
3,351,500	-		DZA65_RS15460	0.84	-0.3
3,351,632	+				-1.2
3,351,633	-				-0.5
3,351,637	+				+0.9
3,351,637	+				-0.5
3,351,638	-				-1.3
3,351,638	-				-1.1
3,351,638	-				+0.7
3,351,639	+				-1.3
3,351,639	+				-1.8
3,351,639	+				-2.9
3,351,639	+				-0.1
3,351,639	+				-1.5
3,351,640	-				-1.0
3,351,640	-				-0.5
3,351,640	-				-0.2
3,351,670	-				-1.8
3,351,670	-				+0.2
3,351,674	+				-1.5
3,351,678	-				-1.5