Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15260

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,310,632	+		DZA65_RS15250	0.70	+0.0
3,310,632	+		DZA65_RS15250	0.70	-0.3
3,310,632	+		DZA65_RS15250	0.70	-0.8
3,310,633	-		DZA65_RS15250	0.70	-0.5
3,310,645	+		DZA65_RS15250	0.73	-0.8
3,310,645	+		DZA65_RS15250	0.73	-2.9
3,310,645	+		DZA65_RS15250	0.73	-0.5
3,310,645	+		DZA65_RS15250	0.73	+0.2
3,310,646	-		DZA65_RS15250	0.73	-0.7
3,310,646	-		DZA65_RS15250	0.73	-0.5
3,310,646	-		DZA65_RS15250	0.73	-0.4
3,310,646	-		DZA65_RS15250	0.73	-0.5
3,310,646	-		DZA65_RS15250	0.73	-0.5
3,310,647	+		DZA65_RS15250	0.73	-0.1
3,310,647	+		DZA65_RS15250	0.73	-0.4
3,310,647	+		DZA65_RS15250	0.73	-0.1
3,310,647	+		DZA65_RS15250	0.73	+1.2
3,310,647	+		DZA65_RS15250	0.73	-1.5
3,310,647	+		DZA65_RS15250	0.73	+0.2
3,310,647	+		DZA65_RS15250	0.73	-1.0
3,310,647	+		DZA65_RS15250	0.73	-0.5
3,310,647	+		DZA65_RS15250	0.73	-1.8
3,310,647	+		DZA65_RS15250	0.73	-0.8
3,310,648	-		DZA65_RS15250	0.73	+0.3
3,310,648	-				-1.1
3,310,648	-		DZA65_RS15250	0.73	-0.4
3,310,648	-		DZA65_RS15250	0.73	-1.6
3,310,648	-		DZA65_RS15250	0.73	+1.5
3,310,648	-		DZA65_RS15250	0.73	-0.1
3,310,648	-		DZA65_RS15250	0.73	-2.0
3,310,648	-		DZA65_RS15250	0.73	+0.3
3,310,648	-		DZA65_RS15250	0.73	+0.1
3,310,686	+		DZA65_RS15250	0.80	-1.0
3,310,686	+		DZA65_RS15250	0.80	-0.3
3,310,686	+		DZA65_RS15250	0.80	+0.5
3,310,686	+		DZA65_RS15250	0.80	-0.6
3,310,686	+		DZA65_RS15250	0.80	-0.5
3,310,687	-		DZA65_RS15250	0.80	+1.0
3,310,687	-		DZA65_RS15250	0.80	-0.5
3,310,687	-		DZA65_RS15250	0.80	-1.5
3,310,689	+		DZA65_RS15250	0.80	-0.6
3,310,689	+		DZA65_RS15250	0.80	+0.2
3,310,689	+		DZA65_RS15250	0.80	+0.2
3,310,689	+		DZA65_RS15250	0.80	+0.9
3,310,689	+		DZA65_RS15250	0.80	-1.0
3,310,689	+		DZA65_RS15250	0.80	+0.8
3,310,689	+		DZA65_RS15250	0.80	-1.3
3,310,690	-		DZA65_RS15250	0.81	-0.5
3,310,690	-		DZA65_RS15250	0.81	-0.1
3,310,690	-		DZA65_RS15250	0.81	+0.5
3,310,690	-		DZA65_RS15250	0.81	-0.6
3,310,690	-		DZA65_RS15250	0.81	-1.8
3,310,690	-		DZA65_RS15250	0.81	-1.2
3,310,690	-		DZA65_RS15250	0.81	-1.2
3,310,690	-		DZA65_RS15250	0.81	+1.9
3,310,735	+		DZA65_RS15250	0.89	-0.8
3,310,735	+		DZA65_RS15250	0.89	-1.0
3,310,735	+		DZA65_RS15250	0.89	-0.5
3,310,735	+		DZA65_RS15250	0.89	-0.5
3,310,735	+		DZA65_RS15250	0.89	+1.3
3,310,735	+		DZA65_RS15250	0.89	+1.2
3,310,735	+		DZA65_RS15250	0.89	+0.6
3,310,735	+		DZA65_RS15250	0.89	-0.1
3,310,735	+		DZA65_RS15250	0.89	-1.8
3,310,735	+		DZA65_RS15250	0.89	-1.5
3,310,735	+		DZA65_RS15250	0.89	-2.3
3,310,735	+		DZA65_RS15250	0.89	+1.3
3,310,735	+		DZA65_RS15250	0.89	+0.3
3,310,736	-		DZA65_RS15250	0.89	-0.2
3,310,736	-		DZA65_RS15250	0.89	-0.5
3,310,736	-		DZA65_RS15250	0.89	-1.3
3,310,736	-		DZA65_RS15250	0.89	-1.0
3,310,796	+				-1.3
3,310,796	+				-0.2
3,310,807	+				-0.1
3,310,807	+				-0.6
3,310,807	+				-0.8
3,310,807	+				-0.1
3,310,807	+				-0.6
3,310,808	-				-1.5
3,310,808	-				+0.0
3,310,808	-				+0.3
3,310,808	-				+0.1
3,310,808	-				+0.5
3,310,808	-				-0.8
3,310,811	+				-2.0
3,310,811	+				-1.8
3,310,811	+				-0.4
3,310,811	+				-1.7
3,310,812	-				-0.7
3,310,812	-				+0.9
3,310,812	-				+0.6
3,310,812	-				-0.1
3,310,812	-				-0.3
3,310,812	-				-0.6
3,310,813	+				-0.3
3,310,854	+				+0.1
3,310,854	+				-1.2
3,310,864	+				-1.1
3,310,865	-				+0.1
3,310,956	+				+0.2
3,311,053	-				-0.9
3,311,055	+				-1.1
3,311,055	+				+0.5
3,311,056	-				-1.3
3,311,056	-				-0.3
3,311,060	+				-0.6
3,311,060	+				-2.0
3,311,060	+				-1.3
3,311,060	+				-0.2
3,311,061	-				-1.7
3,311,061	-				-0.8
3,311,061	-				-1.1
3,311,066	+				-0.5
3,311,066	+				-0.1
3,311,066	+				-0.2
3,311,066	+				+0.0
3,311,066	+				-1.5
3,311,066	+				+0.1
3,311,066	+				-2.0
3,311,066	+				-0.7
3,311,066	+				-1.1
3,311,066	+				-0.2
3,311,066	+				-1.5
3,311,066	+				+0.1
3,311,066	+				+0.7
3,311,066	+				-2.0
3,311,066	+				+0.9
3,311,067	-				-1.5
3,311,067	-				+0.1
3,311,067	-				-2.1
3,311,067	-				-0.1
3,311,067	-				-1.1
3,311,067	-				-0.6
3,311,067	-				+0.3
3,311,067	-				+0.1
3,311,067	-				+1.5
3,311,067	-				-0.5
3,311,100	-				+0.5
3,311,147	+		DZA65_RS15255	0.18	+1.5
3,311,148	-		DZA65_RS15255	0.18	-0.0
3,311,218	+		DZA65_RS15255	0.37	-0.3
3,311,218	+		DZA65_RS15255	0.37	-1.0
3,311,219	-		DZA65_RS15255	0.37	-0.5
3,311,277	+		DZA65_RS15255	0.53	-0.5
3,311,278	-		DZA65_RS15255	0.53	-1.1
3,311,278	-		DZA65_RS15255	0.53	-0.5
3,311,278	-		DZA65_RS15255	0.53	+0.2
3,311,402	+		DZA65_RS15255	0.87	+1.1
3,311,402	+		DZA65_RS15255	0.87	-0.5
3,311,403	-		DZA65_RS15255	0.87	-0.9
3,311,403	-		DZA65_RS15255	0.87	-0.7
3,311,444	+				-0.6
3,311,445	-				-2.0
3,311,445	-				-0.4
3,311,445	-				+1.2
3,311,445	-				-0.8
3,311,476	+				-0.6
3,311,476	+				-1.1
3,311,476	+				-1.3
3,311,480	+				-1.8
3,311,480	+				+0.3
3,311,480	+				+0.1
3,311,481	-				-1.2
3,311,582	-				-0.4
3,311,633	+				-0.1
3,311,664	+		DZA65_RS15260	0.10	-0.4
3,311,664	+		DZA65_RS15260	0.10	+0.2
3,311,664	+		DZA65_RS15260	0.10	-0.3
3,311,665	-		DZA65_RS15260	0.10	-1.3
3,311,665	-		DZA65_RS15260	0.10	-0.1
3,311,665	-		DZA65_RS15260	0.10	+0.4
3,311,665	-		DZA65_RS15260	0.10	+1.7
3,311,665	-		DZA65_RS15260	0.10	-0.7
3,311,665	-		DZA65_RS15260	0.10	+1.5
3,311,665	-		DZA65_RS15260	0.10	+1.1
3,311,665	-		DZA65_RS15260	0.10	-0.1
3,311,824	+		DZA65_RS15260	0.34	-1.8
3,311,825	-		DZA65_RS15260	0.35	-0.6
3,311,825	-		DZA65_RS15260	0.35	-0.2
3,311,825	-		DZA65_RS15260	0.35	-0.7
3,311,867	+		DZA65_RS15260	0.41	+0.0
3,312,003	-		DZA65_RS15260	0.62	-1.3
3,312,128	+		DZA65_RS15260	0.81	-1.1
3,312,128	+		DZA65_RS15260	0.81	+0.5
3,312,129	-		DZA65_RS15260	0.81	+0.5
3,312,129	-		DZA65_RS15260	0.81	-0.6
3,312,156	-		DZA65_RS15260	0.85	-0.8
3,312,193	-				-0.3
3,312,245	+				-1.3
3,312,246	-				+0.0
3,312,270	+				-1.1
3,312,270	+				-0.2
3,312,271	-				-0.3
3,312,274	+				-0.5
3,312,274	+				+0.5
3,312,274	+				+1.5
3,312,274	+				-0.1
3,312,274	+				+0.5
3,312,274	+				+0.2
3,312,274	+				-1.3
3,312,275	-				+0.5
3,312,275	-				-1.7
3,312,275	-				+0.2
3,312,275	-				+0.6
3,312,278	+				-1.5
3,312,278	+				-1.1
3,312,278	+				-2.1
3,312,279	-				-1.1
3,312,282	+				-0.8
3,312,282	+				+1.3
3,312,282	+				-0.9
3,312,282	+				+0.8
3,312,283	-				+0.5
3,312,288	-				+0.4
3,312,295	-				+0.1
3,312,298	+				-0.1
3,312,298	+				-0.8
3,312,298	+				-0.1
3,312,298	+				+0.1
3,312,298	+				-1.3
3,312,298	+				+0.5
3,312,299	-				-0.6
3,312,299	-				+0.5
3,312,299	-				-0.1
3,312,299	-				-0.2
3,312,299	-				-0.4
3,312,299	-				-0.9
3,312,299	-				-2.2
3,312,299	-				-0.4
3,312,304	-				-0.8
3,312,310	+				+1.3
3,312,310	+				-0.2
3,312,310	+				-2.0
3,312,311	-				-0.1
3,312,311	-				-0.3
3,312,314	+				-1.4
3,312,314	+				-1.0
3,312,314	+				+0.9
3,312,314	+				+0.1
3,312,315	-				+0.0
3,312,315	-				-0.7
3,312,315	-				-2.2
3,312,319	+				+0.9
3,312,351	+				-0.1
3,312,352	-				-1.9
3,312,352	-				-2.8
3,312,352	-				+1.7
3,312,397	-				+0.9
3,312,397	-				-1.7
3,312,430	+		DZA65_RS15265	0.16	-1.7
3,312,431	-		DZA65_RS15265	0.16	+0.5
3,312,431	-		DZA65_RS15265	0.16	+0.7
3,312,431	-		DZA65_RS15265	0.16	-0.1
3,312,431	-		DZA65_RS15265	0.16	-1.0
3,312,431	-		DZA65_RS15265	0.16	-0.8
3,312,438	+		DZA65_RS15265	0.17	-0.9
3,312,438	+		DZA65_RS15265	0.17	+1.5
3,312,438	+		DZA65_RS15265	0.17	-1.2
3,312,438	+		DZA65_RS15265	0.17	-1.3
3,312,438	+		DZA65_RS15265	0.17	-0.8
3,312,438	+		DZA65_RS15265	0.17	-2.7
3,312,438	+		DZA65_RS15265	0.17	-0.5
3,312,438	+		DZA65_RS15265	0.17	-2.0
3,312,438	+		DZA65_RS15265	0.17	+0.8
3,312,438	+		DZA65_RS15265	0.17	-1.7
3,312,438	+		DZA65_RS15265	0.17	+0.2
3,312,438	+		DZA65_RS15265	0.17	+2.8
3,312,439	-		DZA65_RS15265	0.17	-0.1
3,312,439	-		DZA65_RS15265	0.17	-0.3
3,312,439	-		DZA65_RS15265	0.17	+1.5
3,312,439	-		DZA65_RS15265	0.17	-0.1
3,312,439	-		DZA65_RS15265	0.17	+0.1
3,312,439	-		DZA65_RS15265	0.17	+0.3
3,312,439	-		DZA65_RS15265	0.17	-1.1
3,312,439	-		DZA65_RS15265	0.17	-0.5
3,312,439	-		DZA65_RS15265	0.17	+1.2
3,312,466	+		DZA65_RS15265	0.23	-1.2
3,312,467	-		DZA65_RS15265	0.23	+1.5
3,312,515	+		DZA65_RS15265	0.33	-1.0
3,312,515	+		DZA65_RS15265	0.33	-0.7
3,312,515	+		DZA65_RS15265	0.33	+0.3
3,312,515	+		DZA65_RS15265	0.33	+0.5
3,312,515	+		DZA65_RS15265	0.33	+3.5
3,312,515	+		DZA65_RS15265	0.33	-0.8
3,312,515	+		DZA65_RS15265	0.33	+0.5
3,312,515	+		DZA65_RS15265	0.33	-0.4
3,312,515	+		DZA65_RS15265	0.33	+0.5
3,312,516	-		DZA65_RS15265	0.33	-0.6
3,312,516	-		DZA65_RS15265	0.33	-0.3
3,312,516	-		DZA65_RS15265	0.33	-1.3
3,312,516	-		DZA65_RS15265	0.33	+0.5
3,312,516	-		DZA65_RS15265	0.33	-0.5
3,312,531	+		DZA65_RS15265	0.36	+0.8
3,312,531	+		DZA65_RS15265	0.36	-0.4
3,312,531	+		DZA65_RS15265	0.36	+1.0
3,312,531	+		DZA65_RS15265	0.36	+0.5
3,312,531	+		DZA65_RS15265	0.36	-0.2
3,312,531	+		DZA65_RS15265	0.36	+0.9
3,312,532	-		DZA65_RS15265	0.36	+0.7
3,312,532	-		DZA65_RS15265	0.36	-2.1
3,312,532	-		DZA65_RS15265	0.36	-0.5
3,312,532	-		DZA65_RS15265	0.36	-0.5
3,312,532	-		DZA65_RS15265	0.36	-0.9
3,312,541	-		DZA65_RS15265	0.38	-1.1
3,312,596	-		DZA65_RS15265	0.49	+0.4
3,312,659	-		DZA65_RS15265	0.62	+0.8
3,312,730	-		DZA65_RS15265	0.76	+0.5
3,312,745	+		DZA65_RS15265	0.79	-0.1
3,312,745	+		DZA65_RS15265	0.79	+0.1
3,312,745	+		DZA65_RS15265	0.79	-0.2
3,312,746	-		DZA65_RS15265	0.79	-0.8
3,312,820	+				+1.9
3,312,820	+				+0.3
3,312,821	-				+0.5
3,312,821	-				-0.5
3,312,835	+				-0.6
3,312,836	-				-0.7
3,312,850	+				+0.2
3,312,967	+				-0.7
3,312,980	+				-0.8
3,313,054	+		DZA65_RS15270	0.15	-1.0
3,313,054	+		DZA65_RS15270	0.15	-0.1
3,313,055	-		DZA65_RS15270	0.16	-2.0
3,313,055	-		DZA65_RS15270	0.16	+0.3
3,313,106	+				+1.5
3,313,131	+		DZA65_RS15270	0.32	-2.4
3,313,131	+		DZA65_RS15270	0.32	-0.3
3,313,132	-		DZA65_RS15270	0.32	+1.0
3,313,132	-		DZA65_RS15270	0.32	-0.2
3,313,132	-		DZA65_RS15270	0.32	-0.6
3,313,132	-		DZA65_RS15270	0.32	-0.3
3,313,132	-		DZA65_RS15270	0.32	-1.5
3,313,134	+		DZA65_RS15270	0.33	-0.7
3,313,135	-		DZA65_RS15270	0.33	+0.7