Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS12235

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,614,159	+				+0.2
2,614,161	-				-0.7
2,614,161	-				-0.5
2,614,223	+		DZA65_RS12225	0.13	-1.0
2,614,223	+		DZA65_RS12225	0.13	-1.7
2,614,223	+		DZA65_RS12225	0.13	-0.0
2,614,223	+		DZA65_RS12225	0.13	-0.0
2,614,223	+		DZA65_RS12225	0.13	-0.3
2,614,224	-		DZA65_RS12225	0.13	+1.3
2,614,224	-		DZA65_RS12225	0.13	+0.5
2,614,224	-		DZA65_RS12225	0.13	+1.0
2,614,224	-		DZA65_RS12225	0.13	+0.7
2,614,530	+		DZA65_RS12225	0.77	-2.0
2,614,530	+		DZA65_RS12225	0.77	+1.3
2,614,531	-		DZA65_RS12225	0.77	+0.3
2,614,531	-		DZA65_RS12225	0.77	-1.0
2,614,531	-		DZA65_RS12225	0.77	-0.4
2,614,666	+				-0.3
2,614,666	+				+0.6
2,614,666	+				-0.0
2,614,666	+				+0.1
2,614,666	+				-0.5
2,614,667	-				-0.8
2,614,683	+				+0.3
2,615,031	+		DZA65_RS12230	0.75	-0.3
2,615,032	-		DZA65_RS12230	0.75	+0.3
2,615,107	+		DZA65_RS12230	0.90	+0.4
2,615,455	+		DZA65_RS12235	0.24	+0.2
2,615,455	+		DZA65_RS12235	0.24	-1.4
2,615,455	+		DZA65_RS12235	0.24	+0.6
2,615,455	+		DZA65_RS12235	0.24	+1.1
2,615,455	+		DZA65_RS12235	0.24	-0.1
2,615,456	-		DZA65_RS12235	0.24	+0.1
2,615,456	-		DZA65_RS12235	0.24	-1.8
2,615,456	-		DZA65_RS12235	0.24	-0.4
2,615,457	+		DZA65_RS12235	0.24	-1.4
2,615,457	+		DZA65_RS12235	0.24	-0.3
2,615,458	-		DZA65_RS12235	0.25	+0.7
2,615,458	-		DZA65_RS12235	0.25	-1.0
2,615,458	-		DZA65_RS12235	0.25	-1.3
2,615,650	+		DZA65_RS12235	0.40	+0.7
2,615,779	+		DZA65_RS12235	0.51	-1.7
2,615,779	+		DZA65_RS12235	0.51	-0.7
2,615,864	-		DZA65_RS12235	0.58	-0.8
2,615,872	-		DZA65_RS12235	0.58	+0.4
2,615,906	+		DZA65_RS12235	0.61	-1.0
2,615,907	-		DZA65_RS12235	0.61	-1.4
2,615,907	-		DZA65_RS12235	0.61	+0.1
2,615,907	-		DZA65_RS12235	0.61	+0.2
2,615,945	+		DZA65_RS12235	0.64	-0.3
2,615,945	+		DZA65_RS12235	0.64	-0.1
2,615,945	+		DZA65_RS12235	0.64	+1.3
2,615,946	-		DZA65_RS12235	0.64	+1.0
2,615,987	+		DZA65_RS12235	0.68	-2.6
2,615,987	+		DZA65_RS12235	0.68	-0.1
2,615,987	+		DZA65_RS12235	0.68	+0.3
2,615,987	+		DZA65_RS12235	0.68	+0.3
2,615,988	-		DZA65_RS12235	0.68	-0.7
2,616,061	+		DZA65_RS12235	0.74	-1.0
2,616,062	-		DZA65_RS12235	0.74	-1.1
2,616,222	-		DZA65_RS12235	0.87	-0.3
2,616,263	-				-1.5
2,616,547	-		DZA65_RS12240	0.26	-1.9
2,616,547	-		DZA65_RS12240	0.26	-0.9
2,616,547	-		DZA65_RS12240	0.26	-0.3
2,616,816	+		DZA65_RS12240	0.67	-0.5
2,616,816	+		DZA65_RS12240	0.67	-0.1
2,616,816	+		DZA65_RS12240	0.67	-0.8
2,616,816	+		DZA65_RS12240	0.67	-0.8
2,616,817	-		DZA65_RS12240	0.67	+0.1
2,616,850	+		DZA65_RS12240	0.72	+0.3
2,616,851	-		DZA65_RS12240	0.72	-1.3
2,616,851	-		DZA65_RS12240	0.72	-0.4
2,616,864	+		DZA65_RS12240	0.74	-0.9
2,616,864	+		DZA65_RS12240	0.74	-0.1
2,616,864	+		DZA65_RS12240	0.74	-0.3
2,616,864	+		DZA65_RS12240	0.74	-0.3
2,616,864	+		DZA65_RS12240	0.74	-0.5
2,616,865	-		DZA65_RS12240	0.74	+0.6
2,616,865	-		DZA65_RS12240	0.74	-1.5
2,616,865	-		DZA65_RS12240	0.74	-0.3
2,616,865	-		DZA65_RS12240	0.74	+0.0
2,616,865	-		DZA65_RS12240	0.74	-2.8
2,616,876	-		DZA65_RS12240	0.76	-0.9
2,617,017	+				-1.4
2,617,017	+				-0.7
2,617,017	+				-0.8
2,617,017	+				-0.7
2,617,017	+				-0.3
2,617,018	-				-1.6
2,617,018	-				-1.5
2,617,018	-				+0.7
2,617,018	-				+1.0
2,617,018	-				+1.9
2,617,023	+				-2.0
2,617,023	+				-1.5
2,617,024	-				+2.3
2,617,024	-				+0.0
2,617,176	-		DZA65_RS12245	0.52	-0.1
2,617,273	-		DZA65_RS12245	0.90	-1.3
2,617,273	-		DZA65_RS12245	0.90	-1.0
2,617,311	+				-0.1
2,617,312	-				-0.2
2,617,333	+				-1.5
2,617,333	+				+1.3
2,617,334	-				-1.1
2,617,334	-				-0.1
2,617,338	-				-0.3
2,617,346	-				-0.4
2,617,350	-				-1.5
2,617,379	+				+1.3