Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS12170

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,601,426	+				+0.7
2,601,426	+				-0.9
2,601,426	+				-0.7
2,601,426	+				-1.4
2,601,426	+				-0.4
2,601,426	+				+0.7
2,601,426	+				+0.0
2,601,426	+				-0.7
2,601,426	+				-0.3
2,601,427	-				-2.0
2,601,427	-				-0.8
2,601,427	-				+0.0
2,601,427	-				+0.6
2,601,427	-				-0.3
2,601,427	-				+1.6
2,601,427	-				-0.1
2,601,427	-				-1.5
2,601,427	-				-0.8
2,601,427	-				+0.2
2,601,427	-				-0.1
2,601,427	-				-0.7
2,601,427	-				+0.9
2,601,427	-				-0.3
2,601,457	+				-1.5
2,601,457	+				-1.4
2,601,457	+				-0.1
2,601,457	+				-1.3
2,601,457	+				-1.2
2,601,458	-				-2.3
2,601,458	-				-0.1
2,601,466	+				-0.3
2,601,471	+				+0.7
2,601,471	+				-0.9
2,601,472	-				-0.1
2,601,507	-				+0.7
2,601,514	+				+0.3
2,601,519	+				+0.3
2,601,519	+				-0.3
2,601,520	-				-0.1
2,601,520	-				+1.1
2,601,526	+				-0.8
2,601,539	-				-0.5
2,601,675	-		DZA65_RS12165	0.24	+0.4
2,601,675	-		DZA65_RS12165	0.24	-0.8
2,601,679	+		DZA65_RS12165	0.24	+0.9
2,601,679	+		DZA65_RS12165	0.24	-1.3
2,601,679	+		DZA65_RS12165	0.24	+0.8
2,601,679	+		DZA65_RS12165	0.24	+0.2
2,601,680	-		DZA65_RS12165	0.24	+1.0
2,601,680	-		DZA65_RS12165	0.24	-0.3
2,601,680	-		DZA65_RS12165	0.24	-1.3
2,601,680	-		DZA65_RS12165	0.24	-2.3
2,601,680	-		DZA65_RS12165	0.24	-0.4
2,601,680	-		DZA65_RS12165	0.24	+1.3
2,601,680	-		DZA65_RS12165	0.24	+1.2
2,601,863	-		DZA65_RS12165	0.55	-0.7
2,602,073	+				-0.3
2,602,074	-				+0.0
2,602,128	+				+0.9
2,602,128	+				-0.8
2,602,128	+				-1.8
2,602,128	+				+0.0
2,602,128	+				+1.3
2,602,128	+				+1.0
2,602,128	+				-0.9
2,602,128	+				+0.3
2,602,129	-				-0.1
2,602,129	-				+0.0
2,602,129	-				+0.5
2,602,129	-				+0.9
2,602,129	-				-1.3
2,602,129	-				-0.4
2,602,310	+		DZA65_RS12170	0.23	-0.1
2,602,310	+		DZA65_RS12170	0.23	-1.1
2,602,310	+		DZA65_RS12170	0.23	-1.3
2,602,310	+		DZA65_RS12170	0.23	-0.3
2,602,311	-		DZA65_RS12170	0.23	-0.3
2,602,311	-		DZA65_RS12170	0.23	+2.3
2,602,321	+		DZA65_RS12170	0.24	+0.1
2,602,322	-		DZA65_RS12170	0.24	+1.2
2,602,358	+		DZA65_RS12170	0.29	-0.3
2,602,448	-		DZA65_RS12170	0.40	-1.5
2,602,459	-		DZA65_RS12170	0.42	+0.2
2,602,481	+		DZA65_RS12170	0.45	+0.2
2,602,481	+		DZA65_RS12170	0.45	-0.6
2,602,481	+		DZA65_RS12170	0.45	+0.3
2,602,482	-		DZA65_RS12170	0.45	-1.3
2,602,482	-		DZA65_RS12170	0.45	+0.2
2,602,482	-		DZA65_RS12170	0.45	-1.8
2,602,499	+		DZA65_RS12170	0.47	-0.3
2,602,499	+		DZA65_RS12170	0.47	+0.0
2,602,499	+		DZA65_RS12170	0.47	+0.3
2,602,499	+		DZA65_RS12170	0.47	-0.5
2,602,500	-		DZA65_RS12170	0.47	-0.3
2,602,500	-		DZA65_RS12170	0.47	+1.1
2,602,500	-		DZA65_RS12170	0.47	-2.0
2,602,500	-		DZA65_RS12170	0.47	-0.3
2,602,585	+		DZA65_RS12170	0.58	-2.3
2,602,585	+		DZA65_RS12170	0.58	+0.5
2,602,585	+		DZA65_RS12170	0.58	-0.8
2,602,585	+		DZA65_RS12170	0.58	+0.7
2,602,586	-		DZA65_RS12170	0.58	-1.7
2,602,586	-		DZA65_RS12170	0.58	+0.8
2,602,586	-		DZA65_RS12170	0.58	-1.5
2,602,586	-		DZA65_RS12170	0.58	+0.7
2,602,586	-		DZA65_RS12170	0.58	-0.6
2,602,586	-		DZA65_RS12170	0.58	-1.5
2,602,586	-		DZA65_RS12170	0.58	+1.7
2,602,586	-				+0.3
2,602,586	-		DZA65_RS12170	0.58	+0.2
2,602,694	+		DZA65_RS12170	0.72	+1.0
2,602,694	+		DZA65_RS12170	0.72	-0.8
2,602,736	+		DZA65_RS12170	0.77	+0.0
2,602,907	+				+0.7
2,602,907	+				+0.7
2,602,907	+				+0.9
2,602,908	-				-0.3
2,602,908	-				-0.8
2,602,908	-				+0.4
2,602,951	-				-0.4
2,602,975	+				-0.6
2,602,976	-				+0.3
2,602,976	-				-1.0
2,602,976	-				-0.3
2,602,976	-				+0.2
2,602,976	-				+1.3
2,602,999	+				+1.9
2,602,999	+				+0.0
2,603,000	-				-0.1
2,603,000	-				+0.8
2,603,000	-				-1.2
2,603,000	-				+0.7
2,603,007	+				-1.0
2,603,008	-				+0.3
2,603,015	-				+0.3
2,603,031	+				+0.6
2,603,031	+				-1.5
2,603,032	-				-1.0
2,603,065	+				+0.3
2,603,065	+				+1.9
2,603,140	+		DZA65_RS12175	0.20	-2.7
2,603,187	-		DZA65_RS12175	0.32	-0.5
2,603,189	+		DZA65_RS12175	0.33	-0.6
2,603,189	+		DZA65_RS12175	0.33	-0.7
2,603,190	-		DZA65_RS12175	0.33	-2.0
2,603,190	-		DZA65_RS12175	0.33	-1.1
2,603,361	-		DZA65_RS12175	0.77	-1.7
2,603,473	+				+0.1
2,603,473	+				-1.3
2,603,473	+				-1.5
2,603,473	+				-0.3
2,603,473	+				-0.7
2,603,473	+				+1.3
2,603,474	-				+1.3
2,603,474	-				-0.7
2,603,509	-				-1.3
2,603,516	+				-0.4
2,603,520	+				+0.2
2,603,520	+				-0.5
2,603,520	+				-1.7
2,603,520	+				+0.2
2,603,520	+				-1.5
2,603,520	+				-1.0
2,603,520	+				+0.2
2,603,520	+				+0.4
2,603,521	-				-0.4
2,603,521	-				-0.8
2,603,521	-				+0.1
2,603,521	-				-1.5
2,603,521	-				+0.7
2,603,521	-				-0.4
2,603,521	-				+1.0
2,603,521	-				-1.7
2,603,616	-		DZA65_RS12180	0.43	-0.3
2,603,616	-		DZA65_RS12180	0.43	-0.5
2,603,616	-		DZA65_RS12180	0.43	-1.2
2,603,704	-		DZA65_RS12180	0.86	+0.3
2,603,717	+				-2.0
2,603,718	-				+0.3
2,603,735	+				+0.1
2,603,735	+				+0.1
2,603,735	+				-0.2
2,603,736	-				+0.9
2,603,736	-				-1.4
2,603,736	-				-3.1
2,603,736	-				-0.6
2,603,736	-				+0.1
2,603,736	-				+1.9
2,603,736	-				-0.5
2,603,739	+				-0.5
2,603,739	+				-1.7
2,603,739	+				+0.3
2,603,739	+				-1.0
2,603,740	-				-0.5
2,603,740	-				+0.7
2,603,740	-				-1.2
2,603,740	-				+1.0
2,603,740	-				+0.3
2,603,740	-				-0.7
2,603,740	-				-2.1
2,603,740	-				-1.0
2,603,750	-				-1.0
2,603,796	-				-0.3
2,603,814	+				-1.8
2,603,814	+				+0.0
2,603,814	+				-1.0
2,603,815	-				-1.3
2,603,820	-				-0.3
2,603,881	-				-0.8
2,603,903	+				+0.3
2,603,903	+				-1.3
2,603,903	+				-0.7
2,603,903	+				-0.5
2,603,904	-				+1.3
2,603,904	-				-2.6
2,603,904	-				-0.1
2,603,904	-				+1.1