Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS11390 and DZA65_RS11395 are separated by 222 nucleotides DZA65_RS11395 and DZA65_RS11400 overlap by 4 nucleotides
DZA65_RS11390: DZA65_RS11390 - tetratricopeptide repeat-containing protein, at 2,423,556 to 2,424,365
_RS11390
DZA65_RS11395: DZA65_RS11395 - peptide chain release factor N(5)-glutamine methyltransferase, at 2,424,588 to 2,425,439
_RS11395
DZA65_RS11400: DZA65_RS11400 - peptide chain release factor 1, at 2,425,436 to 2,426,521
_RS11400
Position (kb)
2424
2425
2426 Strain fitness (log2 ratio)
-1
0
1
2 at 2423.648 kb on - strand, within DZA65_RS11390 at 2423.648 kb on - strand, within DZA65_RS11390 at 2423.648 kb on - strand, within DZA65_RS11390 at 2423.811 kb on - strand, within DZA65_RS11390 at 2423.811 kb on - strand, within DZA65_RS11390 at 2423.897 kb on + strand, within DZA65_RS11390 at 2423.898 kb on - strand, within DZA65_RS11390 at 2424.097 kb on - strand, within DZA65_RS11390 at 2424.097 kb on - strand, within DZA65_RS11390 at 2424.115 kb on - strand, within DZA65_RS11390 at 2424.115 kb on - strand, within DZA65_RS11390 at 2424.115 kb on - strand, within DZA65_RS11390 at 2424.162 kb on - strand, within DZA65_RS11390 at 2424.180 kb on - strand, within DZA65_RS11390 at 2424.180 kb on - strand, within DZA65_RS11390 at 2424.180 kb on - strand, within DZA65_RS11390 at 2424.325 kb on - strand at 2424.325 kb on - strand at 2424.325 kb on - strand at 2424.357 kb on - strand at 2424.366 kb on - strand at 2424.366 kb on - strand at 2424.366 kb on - strand at 2424.366 kb on - strand at 2424.366 kb on - strand at 2424.370 kb on - strand at 2424.370 kb on - strand at 2424.370 kb on - strand at 2424.370 kb on - strand at 2424.370 kb on - strand at 2424.470 kb on - strand at 2424.470 kb on - strand at 2424.470 kb on - strand at 2424.470 kb on - strand at 2424.472 kb on + strand at 2424.473 kb on - strand at 2424.473 kb on - strand at 2424.533 kb on - strand at 2424.539 kb on + strand at 2424.540 kb on - strand at 2424.572 kb on + strand at 2424.583 kb on + strand at 2424.584 kb on - strand at 2424.682 kb on + strand, within DZA65_RS11395 at 2424.683 kb on - strand, within DZA65_RS11395 at 2424.884 kb on - strand, within DZA65_RS11395 at 2424.987 kb on - strand, within DZA65_RS11395 at 2424.989 kb on - strand, within DZA65_RS11395 at 2424.989 kb on - strand, within DZA65_RS11395 at 2425.231 kb on + strand, within DZA65_RS11395 at 2425.432 kb on + strand at 2425.433 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,423,648 - DZA65_RS11390 0.11 -1.0 2,423,648 - DZA65_RS11390 0.11 +0.3 2,423,648 - DZA65_RS11390 0.11 -0.8 2,423,811 - DZA65_RS11390 0.31 -0.7 2,423,811 - DZA65_RS11390 0.31 -0.2 2,423,897 + DZA65_RS11390 0.42 -0.9 2,423,898 - DZA65_RS11390 0.42 -0.2 2,424,097 - DZA65_RS11390 0.67 -1.0 2,424,097 - DZA65_RS11390 0.67 -1.7 2,424,115 - DZA65_RS11390 0.69 -1.0 2,424,115 - DZA65_RS11390 0.69 -0.5 2,424,115 - DZA65_RS11390 0.69 -1.4 2,424,162 - DZA65_RS11390 0.75 -1.3 2,424,180 - DZA65_RS11390 0.77 -1.0 2,424,180 - DZA65_RS11390 0.77 -0.5 2,424,180 - DZA65_RS11390 0.77 -0.3 2,424,325 - +0.1 2,424,325 - +1.0 2,424,325 - +0.3 2,424,357 - +2.3 2,424,366 - -1.5 2,424,366 - +0.1 2,424,366 - +0.1 2,424,366 - +0.2 2,424,366 - +0.3 2,424,370 - +0.7 2,424,370 - +1.9 2,424,370 - +0.6 2,424,370 - +1.3 2,424,370 - -1.2 2,424,470 - -0.7 2,424,470 - -0.1 2,424,470 - -0.7 2,424,470 - +0.9 2,424,472 + -1.1 2,424,473 - +1.6 2,424,473 - +0.5 2,424,533 - -1.0 2,424,539 + -1.3 2,424,540 - -0.0 2,424,572 + -0.0 2,424,583 + +0.1 2,424,584 - -1.3 2,424,682 + DZA65_RS11395 0.11 +1.6 2,424,683 - DZA65_RS11395 0.11 +0.7 2,424,884 - DZA65_RS11395 0.35 -1.0 2,424,987 - DZA65_RS11395 0.47 +0.3 2,424,989 - DZA65_RS11395 0.47 -0.5 2,424,989 - DZA65_RS11395 0.47 +1.7 2,425,231 + DZA65_RS11395 0.75 +0.6 2,425,432 + +1.3 2,425,433 - -0.3
Or see this region's nucleotide sequence