Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS11370

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,417,164	+				-0.7
2,417,165	-				-0.3
2,417,208	+		DZA65_RS11365	0.12	-1.0
2,417,208	+		DZA65_RS11365	0.12	-1.5
2,417,208	+		DZA65_RS11365	0.12	-0.9
2,417,209	-		DZA65_RS11365	0.12	+0.6
2,417,212	+		DZA65_RS11365	0.13	+0.2
2,417,212	+		DZA65_RS11365	0.13	-1.4
2,417,213	-		DZA65_RS11365	0.13	-0.3
2,417,261	+		DZA65_RS11365	0.18	+0.4
2,417,261	+		DZA65_RS11365	0.18	-0.9
2,417,262	-		DZA65_RS11365	0.18	-1.9
2,417,262	-		DZA65_RS11365	0.18	-2.6
2,417,262	-		DZA65_RS11365	0.18	+0.0
2,417,316	+		DZA65_RS11365	0.23	-1.5
2,417,316	+		DZA65_RS11365	0.23	-0.3
2,417,316	+		DZA65_RS11365	0.23	-0.4
2,417,317	-		DZA65_RS11365	0.24	-0.5
2,417,317	-		DZA65_RS11365	0.24	+1.0
2,417,317	-		DZA65_RS11365	0.24	+2.6
2,417,317	-				-0.3
2,417,317	-		DZA65_RS11365	0.24	-1.0
2,417,320	+		DZA65_RS11365	0.24	-1.0
2,417,320	+		DZA65_RS11365	0.24	-0.3
2,417,320	+		DZA65_RS11365	0.24	-1.0
2,417,321	-		DZA65_RS11365	0.24	-1.1
2,417,321	-		DZA65_RS11365	0.24	+1.3
2,417,321	-		DZA65_RS11365	0.24	+0.5
2,417,321	-		DZA65_RS11365	0.24	-1.7
2,417,321	-		DZA65_RS11365	0.24	-0.8
2,417,323	+		DZA65_RS11365	0.24	+1.6
2,417,324	-		DZA65_RS11365	0.24	+0.8
2,417,324	-		DZA65_RS11365	0.24	+0.3
2,417,324	-		DZA65_RS11365	0.24	+0.1
2,417,324	-		DZA65_RS11365	0.24	-1.0
2,417,377	+		DZA65_RS11365	0.30	+1.3
2,417,377	+		DZA65_RS11365	0.30	+2.3
2,417,377	+		DZA65_RS11365	0.30	+0.6
2,417,377	+		DZA65_RS11365	0.30	+0.9
2,417,378	-		DZA65_RS11365	0.30	-1.1
2,417,420	+		DZA65_RS11365	0.34	-1.7
2,417,420	+		DZA65_RS11365	0.34	+0.2
2,417,420	+		DZA65_RS11365	0.34	+0.1
2,417,421	-		DZA65_RS11365	0.34	-0.6
2,417,421	-		DZA65_RS11365	0.34	+1.2
2,417,421	-		DZA65_RS11365	0.34	-2.4
2,417,421	-		DZA65_RS11365	0.34	-0.5
2,417,492	+		DZA65_RS11365	0.42	-0.3
2,417,492	+		DZA65_RS11365	0.42	+0.3
2,417,493	-		DZA65_RS11365	0.42	-0.4
2,417,493	-		DZA65_RS11365	0.42	-1.4
2,417,496	+		DZA65_RS11365	0.42	-0.7
2,417,496	+		DZA65_RS11365	0.42	-0.8
2,417,496	+		DZA65_RS11365	0.42	+0.2
2,417,496	+		DZA65_RS11365	0.42	+0.3
2,417,496	+		DZA65_RS11365	0.42	-0.7
2,417,496	+		DZA65_RS11365	0.42	-0.0
2,417,496	+		DZA65_RS11365	0.42	-0.5
2,417,496	+		DZA65_RS11365	0.42	-2.0
2,417,496	+		DZA65_RS11365	0.42	-0.5
2,417,497	-		DZA65_RS11365	0.42	+0.9
2,417,497	-		DZA65_RS11365	0.42	-1.1
2,417,522	+		DZA65_RS11365	0.45	-1.3
2,417,523	-		DZA65_RS11365	0.45	-0.4
2,417,523	-		DZA65_RS11365	0.45	+1.1
2,417,590	+		DZA65_RS11365	0.52	-1.5
2,417,591	-		DZA65_RS11365	0.52	-0.7
2,417,700	+		DZA65_RS11365	0.63	+0.3
2,417,737	+		DZA65_RS11365	0.67	-0.7
2,417,738	-		DZA65_RS11365	0.67	-0.1
2,417,952	+		DZA65_RS11365	0.89	-0.9
2,417,983	-				+0.1
2,418,059	+				-1.0
2,418,059	+				-0.4
2,418,060	-				-0.9
2,418,068	+				+0.8
2,418,069	-				-0.7
2,418,078	+				+0.3
2,418,078	+				+0.7
2,418,078	+				+0.3
2,418,145	+				-0.5
2,418,145	+				-0.3
2,418,146	-				-0.6
2,418,203	+				-0.7
2,418,204	-				-1.8
2,418,379	-		DZA65_RS11370	0.17	-0.7
2,418,437	-		DZA65_RS11370	0.21	+2.1
2,418,470	+		DZA65_RS11370	0.23	+0.3
2,418,470	+		DZA65_RS11370	0.23	-1.5
2,418,470	+		DZA65_RS11370	0.23	+0.8
2,418,470	+		DZA65_RS11370	0.23	-1.9
2,418,470	+		DZA65_RS11370	0.23	-0.5
2,418,470	+		DZA65_RS11370	0.23	-0.3
2,418,470	+		DZA65_RS11370	0.23	+1.0
2,418,471	-		DZA65_RS11370	0.24	-0.7
2,418,471	-		DZA65_RS11370	0.24	-1.8
2,418,471	-		DZA65_RS11370	0.24	-2.0
2,418,471	-		DZA65_RS11370	0.24	+0.9
2,418,471	-		DZA65_RS11370	0.24	-1.3
2,418,599	+		DZA65_RS11370	0.33	-1.9
2,418,752	+		DZA65_RS11370	0.44	-0.3
2,418,753	-		DZA65_RS11370	0.44	-1.1
2,418,753	-		DZA65_RS11370	0.44	-0.9
2,418,753	-		DZA65_RS11370	0.44	-0.9
2,418,763	+		DZA65_RS11370	0.45	-1.1
2,418,763	+		DZA65_RS11370	0.45	-2.1
2,418,763	+		DZA65_RS11370	0.45	+1.8
2,418,763	+		DZA65_RS11370	0.45	-0.5
2,418,764	-		DZA65_RS11370	0.45	+0.5
2,418,862	+		DZA65_RS11370	0.52	-0.1
2,418,862	+		DZA65_RS11370	0.52	-0.3
2,418,862	+		DZA65_RS11370	0.52	-1.9
2,418,863	-		DZA65_RS11370	0.52	-1.0
2,418,981	+		DZA65_RS11370	0.60	+0.1
2,418,981	+		DZA65_RS11370	0.60	+0.7
2,418,981	+		DZA65_RS11370	0.60	-1.2
2,418,982	-		DZA65_RS11370	0.60	+0.4
2,419,003	-		DZA65_RS11370	0.62	-0.0
2,419,003	-		DZA65_RS11370	0.62	+0.3
2,419,050	-		DZA65_RS11370	0.65	+1.1
2,419,096	-		DZA65_RS11370	0.69	-2.2
2,419,175	+		DZA65_RS11370	0.74	-1.4
2,419,175	+				+1.3
2,419,175	+		DZA65_RS11370	0.74	-0.5
2,419,175	+		DZA65_RS11370	0.74	-1.9
2,419,175	+		DZA65_RS11370	0.74	-0.7
2,419,176	-		DZA65_RS11370	0.74	+0.4
2,419,316	-		DZA65_RS11370	0.84	-1.7
2,419,316	-		DZA65_RS11370	0.84	-0.9
2,419,503	-				-0.3
2,419,504	+				-0.8
2,419,504	+				-0.5
2,419,504	+				+0.5
2,419,504	+				-0.7
2,419,504	+				-0.7
2,419,505	-				+0.0
2,419,505	-				+0.1
2,419,505	-				+0.5
2,419,505	-				-0.0
2,419,505	-				+1.3
2,419,505	-				-1.1
2,419,505	-				-1.0
2,419,505	-				-1.3
2,419,505	-				-0.1
2,419,505	-				+0.5
2,419,505	-				-2.4
2,419,505	-				+1.0
2,419,505	-				-1.3
2,419,505	-				+0.1
2,419,505	-				+0.1
2,419,519	-				-0.4
2,419,544	+				-0.3
2,419,600	-				-1.1
2,419,642	+				-1.0
2,419,686	+				-1.0
2,419,687	-				+0.3
2,419,726	-		DZA65_RS11375	0.12	-1.5
2,419,757	+		DZA65_RS11375	0.14	+0.9
2,419,757	+		DZA65_RS11375	0.14	-1.5
2,419,757	+		DZA65_RS11375	0.14	-0.0
2,419,757	+		DZA65_RS11375	0.14	-0.3
2,419,758	-		DZA65_RS11375	0.14	-0.6
2,419,758	-		DZA65_RS11375	0.14	+0.5
2,419,758	-		DZA65_RS11375	0.14	-3.9
2,419,758	-		DZA65_RS11375	0.14	-1.0
2,419,758	-		DZA65_RS11375	0.14	-0.3
2,419,758	-		DZA65_RS11375	0.14	-1.1
2,419,761	-		DZA65_RS11375	0.14	-1.1
2,419,761	-		DZA65_RS11375	0.14	-0.4
2,419,848	+		DZA65_RS11375	0.20	-0.2
2,419,849	-		DZA65_RS11375	0.20	+0.3
2,419,849	-		DZA65_RS11375	0.20	-0.1
2,419,893	+		DZA65_RS11375	0.23	-0.7
2,419,893	+		DZA65_RS11375	0.23	-1.9
2,419,893	+		DZA65_RS11375	0.23	-1.5
2,419,894	-		DZA65_RS11375	0.23	+1.3
2,420,080	-		DZA65_RS11375	0.35	-0.4
2,420,096	+		DZA65_RS11375	0.36	+0.7
2,420,096	+		DZA65_RS11375	0.36	-1.9
2,420,097	-		DZA65_RS11375	0.36	+0.6
2,420,097	-		DZA65_RS11375	0.36	-1.0
2,420,097	-		DZA65_RS11375	0.36	-1.3
2,420,139	+		DZA65_RS11375	0.39	-0.3
2,420,142	-		DZA65_RS11375	0.39	-0.3
2,420,142	-		DZA65_RS11375	0.39	-1.0
2,420,253	+		DZA65_RS11375	0.46	+0.2
2,420,254	-		DZA65_RS11375	0.46	-0.3
2,420,322	+		DZA65_RS11375	0.51	+0.3
2,420,322	+		DZA65_RS11375	0.51	+0.5
2,420,323	-		DZA65_RS11375	0.51	-1.7
2,420,323	-		DZA65_RS11375	0.51	-0.6
2,420,326	-		DZA65_RS11375	0.51	+0.7
2,420,326	-		DZA65_RS11375	0.51	+1.3
2,420,373	+		DZA65_RS11375	0.54	-0.3
2,420,373	+		DZA65_RS11375	0.54	+0.6
2,420,373	+		DZA65_RS11375	0.54	+2.3
2,420,374	-		DZA65_RS11375	0.54	-1.4
2,420,400	-		DZA65_RS11375	0.56	+0.3