Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS09920 and DZA65_RS09925 are separated by 193 nucleotides DZA65_RS09925 and DZA65_RS09930 are separated by 7 nucleotides
DZA65_RS09920: DZA65_RS09920 - DNA translocase FtsK, at 2,093,813 to 2,097,343
_RS09920
DZA65_RS09925: DZA65_RS09925 - outer membrane lipoprotein chaperone LolA, at 2,097,537 to 2,098,151
_RS09925
DZA65_RS09930: DZA65_RS09930 - replication-associated recombination protein A, at 2,098,159 to 2,099,502
_RS09930
Position (kb)
2097
2098
2099 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2097.341 kb on + strand at 2097.342 kb on - strand at 2097.342 kb on - strand at 2097.345 kb on - strand at 2097.378 kb on + strand at 2097.379 kb on - strand at 2097.379 kb on - strand at 2097.384 kb on + strand at 2097.435 kb on + strand at 2097.467 kb on + strand at 2097.478 kb on + strand at 2097.478 kb on + strand at 2098.189 kb on - strand at 2098.240 kb on + strand at 2098.240 kb on + strand at 2098.240 kb on + strand at 2098.240 kb on + strand at 2098.240 kb on + strand at 2098.240 kb on + strand at 2098.241 kb on - strand at 2098.241 kb on - strand at 2098.241 kb on - strand at 2098.241 kb on - strand at 2098.241 kb on - strand at 2098.241 kb on - strand at 2098.241 kb on - strand at 2098.241 kb on - strand at 2098.241 kb on - strand at 2098.391 kb on + strand, within DZA65_RS09930 at 2098.391 kb on + strand, within DZA65_RS09930 at 2098.392 kb on - strand, within DZA65_RS09930 at 2098.392 kb on - strand, within DZA65_RS09930 at 2098.515 kb on + strand, within DZA65_RS09930 at 2098.569 kb on + strand, within DZA65_RS09930 at 2098.569 kb on + strand, within DZA65_RS09930 at 2098.636 kb on + strand, within DZA65_RS09930 at 2098.637 kb on - strand, within DZA65_RS09930 at 2098.644 kb on + strand, within DZA65_RS09930 at 2098.698 kb on + strand, within DZA65_RS09930 at 2098.698 kb on + strand, within DZA65_RS09930 at 2098.877 kb on + strand, within DZA65_RS09930 at 2098.921 kb on + strand, within DZA65_RS09930 at 2098.924 kb on + strand, within DZA65_RS09930 at 2098.925 kb on - strand, within DZA65_RS09930 at 2098.947 kb on + strand, within DZA65_RS09930 at 2098.947 kb on + strand, within DZA65_RS09930 at 2098.947 kb on + strand, within DZA65_RS09930 at 2098.947 kb on + strand, within DZA65_RS09930 at 2098.947 kb on + strand, within DZA65_RS09930 at 2098.948 kb on - strand, within DZA65_RS09930 at 2098.948 kb on - strand, within DZA65_RS09930 at 2098.948 kb on - strand, within DZA65_RS09930 at 2098.984 kb on + strand, within DZA65_RS09930 at 2098.984 kb on + strand, within DZA65_RS09930 at 2098.984 kb on + strand, within DZA65_RS09930 at 2098.984 kb on + strand, within DZA65_RS09930 at 2098.985 kb on - strand, within DZA65_RS09930 at 2098.985 kb on - strand, within DZA65_RS09930 at 2098.985 kb on - strand, within DZA65_RS09930 at 2098.985 kb on - strand, within DZA65_RS09930 at 2098.990 kb on + strand, within DZA65_RS09930 at 2099.026 kb on + strand, within DZA65_RS09930 at 2099.026 kb on + strand, within DZA65_RS09930 at 2099.026 kb on + strand, within DZA65_RS09930 at 2099.026 kb on + strand, within DZA65_RS09930 at 2099.026 kb on + strand, within DZA65_RS09930 at 2099.026 kb on + strand, within DZA65_RS09930 at 2099.026 kb on + strand, within DZA65_RS09930 at 2099.026 kb on + strand, within DZA65_RS09930 at 2099.027 kb on - strand, within DZA65_RS09930 at 2099.027 kb on - strand, within DZA65_RS09930 at 2099.027 kb on - strand, within DZA65_RS09930 at 2099.027 kb on - strand, within DZA65_RS09930 at 2099.066 kb on + strand, within DZA65_RS09930 at 2099.066 kb on + strand, within DZA65_RS09930 at 2099.067 kb on - strand, within DZA65_RS09930 at 2099.067 kb on - strand, within DZA65_RS09930 at 2099.067 kb on - strand, within DZA65_RS09930 at 2099.067 kb on - strand, within DZA65_RS09930 at 2099.067 kb on - strand, within DZA65_RS09930 at 2099.067 kb on - strand, within DZA65_RS09930 at 2099.096 kb on + strand, within DZA65_RS09930 at 2099.096 kb on + strand, within DZA65_RS09930
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,097,341 + +1.4 2,097,342 - -1.6 2,097,342 - -0.6 2,097,345 - +0.8 2,097,378 + -0.7 2,097,379 - +0.7 2,097,379 - -1.8 2,097,384 + -0.8 2,097,435 + -0.2 2,097,467 + -0.3 2,097,478 + -0.1 2,097,478 + +1.4 2,098,189 - -0.2 2,098,240 + -0.4 2,098,240 + -1.1 2,098,240 + +0.7 2,098,240 + -0.6 2,098,240 + -0.4 2,098,240 + -0.6 2,098,241 - -0.1 2,098,241 - -0.4 2,098,241 - -0.2 2,098,241 - -0.2 2,098,241 - -1.3 2,098,241 - +0.4 2,098,241 - -0.2 2,098,241 - -0.6 2,098,241 - -1.2 2,098,391 + DZA65_RS09930 0.17 -0.5 2,098,391 + DZA65_RS09930 0.17 -0.7 2,098,392 - DZA65_RS09930 0.17 -1.1 2,098,392 - DZA65_RS09930 0.17 -1.2 2,098,515 + DZA65_RS09930 0.26 -1.5 2,098,569 + DZA65_RS09930 0.31 -1.8 2,098,569 + DZA65_RS09930 0.31 -0.9 2,098,636 + DZA65_RS09930 0.35 -1.0 2,098,637 - DZA65_RS09930 0.36 -0.6 2,098,644 + DZA65_RS09930 0.36 -2.1 2,098,698 + DZA65_RS09930 0.40 +1.4 2,098,698 + DZA65_RS09930 0.40 -1.9 2,098,877 + DZA65_RS09930 0.53 -0.9 2,098,921 + DZA65_RS09930 0.57 +1.1 2,098,924 + DZA65_RS09930 0.57 -0.2 2,098,925 - DZA65_RS09930 0.57 -0.8 2,098,947 + DZA65_RS09930 0.59 +1.4 2,098,947 + DZA65_RS09930 0.59 -1.6 2,098,947 + DZA65_RS09930 0.59 -1.2 2,098,947 + DZA65_RS09930 0.59 +0.8 2,098,947 + DZA65_RS09930 0.59 -0.8 2,098,948 - DZA65_RS09930 0.59 -0.7 2,098,948 - DZA65_RS09930 0.59 -1.4 2,098,948 - DZA65_RS09930 0.59 -1.6 2,098,984 + DZA65_RS09930 0.61 +0.7 2,098,984 + DZA65_RS09930 0.61 +1.1 2,098,984 + DZA65_RS09930 0.61 -1.9 2,098,984 + DZA65_RS09930 0.61 -0.4 2,098,985 - DZA65_RS09930 0.61 +0.7 2,098,985 - DZA65_RS09930 0.61 +0.8 2,098,985 - DZA65_RS09930 0.61 -1.2 2,098,985 - DZA65_RS09930 0.61 +0.4 2,098,990 + DZA65_RS09930 0.62 -0.8 2,099,026 + DZA65_RS09930 0.65 +0.1 2,099,026 + DZA65_RS09930 0.65 -3.0 2,099,026 + DZA65_RS09930 0.65 -0.9 2,099,026 + DZA65_RS09930 0.65 +0.2 2,099,026 + DZA65_RS09930 0.65 +0.1 2,099,026 + DZA65_RS09930 0.65 -0.6 2,099,026 + DZA65_RS09930 0.65 -1.4 2,099,026 + DZA65_RS09930 0.65 +0.8 2,099,027 - DZA65_RS09930 0.65 -0.4 2,099,027 - DZA65_RS09930 0.65 -3.2 2,099,027 - DZA65_RS09930 0.65 -0.2 2,099,027 - DZA65_RS09930 0.65 -0.2 2,099,066 + DZA65_RS09930 0.67 +1.4 2,099,066 + DZA65_RS09930 0.67 +0.4 2,099,067 - DZA65_RS09930 0.68 -0.6 2,099,067 - DZA65_RS09930 0.68 -1.7 2,099,067 - DZA65_RS09930 0.68 +0.5 2,099,067 - DZA65_RS09930 0.68 -1.3 2,099,067 - DZA65_RS09930 0.68 -2.3 2,099,067 - DZA65_RS09930 0.68 -0.6 2,099,096 + DZA65_RS09930 0.70 -0.9 2,099,096 + DZA65_RS09930 0.70 -0.2
Or see this region's nucleotide sequence