Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS09355 and DZA65_RS09360 are separated by 81 nucleotides DZA65_RS09360 and DZA65_RS09365 are separated by 54 nucleotides DZA65_RS09365 and DZA65_RS09370 are separated by 27 nucleotides DZA65_RS09370 and DZA65_RS09375 are separated by 0 nucleotides DZA65_RS09375 and DZA65_RS09380 overlap by 11 nucleotides
DZA65_RS09355: DZA65_RS09355 - SDR family NAD(P)-dependent oxidoreductase, at 1,972,376 to 1,973,182
_RS09355
DZA65_RS09360: DZA65_RS09360 - hypothetical protein, at 1,973,264 to 1,973,716
_RS09360
DZA65_RS09365: DZA65_RS09365 - hypothetical protein, at 1,973,771 to 1,974,067
_RS09365
DZA65_RS09370: DZA65_RS09370 - short-chain dehydrogenase, at 1,974,095 to 1,974,274
_RS09370
DZA65_RS09375: DZA65_RS09375 - type II toxin-antitoxin system RelE/ParE family toxin, at 1,974,275 to 1,974,343
_RS09375
DZA65_RS09380: DZA65_RS09380 - hypothetical protein, at 1,974,333 to 1,974,578
_RS09380
Position (kb) 1973
1974 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1972.264 kb on - strand at 1972.278 kb on - strand at 1972.315 kb on - strand at 1972.332 kb on + strand at 1972.333 kb on - strand at 1972.333 kb on - strand at 1972.333 kb on - strand at 1972.333 kb on - strand at 1972.349 kb on + strand at 1972.362 kb on + strand at 1972.362 kb on + strand at 1972.468 kb on + strand, within DZA65_RS09355 at 1972.468 kb on + strand, within DZA65_RS09355 at 1972.490 kb on + strand, within DZA65_RS09355 at 1972.491 kb on - strand, within DZA65_RS09355 at 1972.491 kb on - strand, within DZA65_RS09355 at 1972.491 kb on - strand, within DZA65_RS09355 at 1972.504 kb on - strand, within DZA65_RS09355 at 1972.504 kb on - strand, within DZA65_RS09355 at 1972.519 kb on - strand, within DZA65_RS09355 at 1972.519 kb on - strand, within DZA65_RS09355 at 1972.529 kb on - strand, within DZA65_RS09355 at 1972.529 kb on - strand, within DZA65_RS09355 at 1972.616 kb on + strand, within DZA65_RS09355 at 1972.616 kb on + strand, within DZA65_RS09355 at 1972.616 kb on + strand, within DZA65_RS09355 at 1972.616 kb on + strand, within DZA65_RS09355 at 1972.616 kb on + strand, within DZA65_RS09355 at 1972.616 kb on + strand, within DZA65_RS09355 at 1972.617 kb on - strand, within DZA65_RS09355 at 1972.617 kb on - strand, within DZA65_RS09355 at 1972.617 kb on - strand, within DZA65_RS09355 at 1972.617 kb on - strand, within DZA65_RS09355 at 1972.617 kb on - strand, within DZA65_RS09355 at 1972.617 kb on - strand, within DZA65_RS09355 at 1972.617 kb on - strand, within DZA65_RS09355 at 1972.618 kb on + strand, within DZA65_RS09355 at 1972.618 kb on + strand, within DZA65_RS09355 at 1972.618 kb on + strand, within DZA65_RS09355 at 1972.618 kb on + strand, within DZA65_RS09355 at 1972.619 kb on - strand, within DZA65_RS09355 at 1972.722 kb on - strand, within DZA65_RS09355 at 1972.799 kb on + strand, within DZA65_RS09355 at 1972.799 kb on + strand, within DZA65_RS09355 at 1972.800 kb on - strand, within DZA65_RS09355 at 1972.802 kb on + strand, within DZA65_RS09355 at 1972.802 kb on + strand, within DZA65_RS09355 at 1972.802 kb on + strand, within DZA65_RS09355 at 1972.803 kb on - strand, within DZA65_RS09355 at 1972.803 kb on - strand, within DZA65_RS09355 at 1972.832 kb on + strand, within DZA65_RS09355 at 1972.903 kb on + strand, within DZA65_RS09355 at 1972.904 kb on - strand, within DZA65_RS09355 at 1972.904 kb on - strand, within DZA65_RS09355 at 1972.921 kb on + strand, within DZA65_RS09355 at 1972.958 kb on + strand, within DZA65_RS09355 at 1973.034 kb on + strand, within DZA65_RS09355 at 1973.034 kb on + strand, within DZA65_RS09355 at 1973.034 kb on + strand, within DZA65_RS09355 at 1973.034 kb on + strand, within DZA65_RS09355 at 1973.034 kb on + strand, within DZA65_RS09355 at 1973.035 kb on - strand, within DZA65_RS09355 at 1973.035 kb on - strand, within DZA65_RS09355 at 1973.080 kb on + strand, within DZA65_RS09355 at 1973.126 kb on + strand at 1973.126 kb on + strand at 1973.127 kb on - strand at 1973.127 kb on - strand at 1973.127 kb on - strand at 1973.127 kb on - strand at 1973.181 kb on - strand at 1973.198 kb on + strand at 1973.201 kb on - strand at 1973.201 kb on - strand at 1973.201 kb on - strand at 1973.242 kb on + strand at 1973.287 kb on + strand at 1973.288 kb on - strand at 1973.338 kb on + strand, within DZA65_RS09360 at 1973.386 kb on + strand, within DZA65_RS09360 at 1973.439 kb on - strand, within DZA65_RS09360 at 1973.439 kb on - strand, within DZA65_RS09360 at 1973.439 kb on - strand, within DZA65_RS09360 at 1973.439 kb on - strand, within DZA65_RS09360 at 1973.488 kb on - strand, within DZA65_RS09360 at 1973.488 kb on - strand, within DZA65_RS09360 at 1973.500 kb on + strand, within DZA65_RS09360 at 1973.501 kb on - strand, within DZA65_RS09360 at 1973.501 kb on - strand, within DZA65_RS09360 at 1973.501 kb on - strand, within DZA65_RS09360 at 1973.504 kb on + strand, within DZA65_RS09360 at 1973.504 kb on + strand, within DZA65_RS09360 at 1973.534 kb on + strand, within DZA65_RS09360 at 1973.538 kb on + strand, within DZA65_RS09360 at 1973.538 kb on + strand, within DZA65_RS09360 at 1973.538 kb on + strand, within DZA65_RS09360 at 1973.538 kb on + strand, within DZA65_RS09360 at 1973.539 kb on - strand, within DZA65_RS09360 at 1973.573 kb on - strand, within DZA65_RS09360 at 1973.574 kb on + strand, within DZA65_RS09360 at 1973.714 kb on + strand at 1973.715 kb on - strand at 1973.715 kb on - strand at 1973.738 kb on - strand at 1973.756 kb on + strand at 1973.756 kb on + strand at 1973.758 kb on + strand at 1973.758 kb on + strand at 1973.758 kb on + strand at 1973.759 kb on - strand at 1973.759 kb on - strand at 1973.759 kb on - strand at 1973.759 kb on - strand at 1973.759 kb on - strand at 1973.759 kb on - strand at 1973.759 kb on - strand at 1973.781 kb on - strand at 1973.784 kb on + strand at 1973.784 kb on + strand at 1973.875 kb on + strand, within DZA65_RS09365 at 1973.875 kb on + strand, within DZA65_RS09365 at 1973.952 kb on - strand, within DZA65_RS09365 at 1973.975 kb on - strand, within DZA65_RS09365 at 1973.975 kb on - strand, within DZA65_RS09365 at 1973.977 kb on + strand, within DZA65_RS09365 at 1973.978 kb on - strand, within DZA65_RS09365 at 1974.001 kb on + strand, within DZA65_RS09365 at 1974.001 kb on + strand, within DZA65_RS09365 at 1974.007 kb on - strand, within DZA65_RS09365 at 1974.026 kb on + strand, within DZA65_RS09365 at 1974.027 kb on - strand, within DZA65_RS09365 at 1974.027 kb on - strand, within DZA65_RS09365 at 1974.035 kb on + strand, within DZA65_RS09365 at 1974.035 kb on + strand, within DZA65_RS09365 at 1974.036 kb on - strand, within DZA65_RS09365 at 1974.036 kb on - strand, within DZA65_RS09365 at 1974.036 kb on - strand, within DZA65_RS09365 at 1974.041 kb on - strand at 1974.079 kb on + strand at 1974.104 kb on - strand at 1974.137 kb on - strand, within DZA65_RS09370 at 1974.168 kb on + strand, within DZA65_RS09370 at 1974.194 kb on + strand, within DZA65_RS09370 at 1974.194 kb on + strand, within DZA65_RS09370 at 1974.194 kb on + strand, within DZA65_RS09370 at 1974.194 kb on + strand, within DZA65_RS09370 at 1974.194 kb on + strand, within DZA65_RS09370 at 1974.195 kb on - strand, within DZA65_RS09370 at 1974.195 kb on - strand, within DZA65_RS09370 at 1974.195 kb on - strand, within DZA65_RS09370 at 1974.288 kb on + strand, within DZA65_RS09375 at 1974.289 kb on - strand, within DZA65_RS09375 at 1974.289 kb on - strand, within DZA65_RS09375 at 1974.335 kb on - strand at 1974.335 kb on - strand at 1974.466 kb on + strand, within DZA65_RS09380 at 1974.466 kb on + strand, within DZA65_RS09380 at 1974.467 kb on - strand, within DZA65_RS09380 at 1974.467 kb on - strand, within DZA65_RS09380 at 1974.531 kb on + strand, within DZA65_RS09380 at 1974.532 kb on - strand, within DZA65_RS09380 at 1974.532 kb on - strand, within DZA65_RS09380 at 1974.532 kb on - strand, within DZA65_RS09380 at 1974.532 kb on - strand, within DZA65_RS09380 at 1974.532 kb on - strand, within DZA65_RS09380 at 1974.569 kb on + strand at 1974.570 kb on - strand at 1974.570 kb on - strand at 1974.583 kb on + strand at 1974.583 kb on + strand at 1974.584 kb on - strand at 1974.645 kb on + strand at 1974.646 kb on - strand at 1974.646 kb on - strand at 1974.646 kb on - strand at 1974.646 kb on - strand at 1974.666 kb on + strand at 1974.666 kb on + strand at 1974.666 kb on + strand at 1974.666 kb on + strand at 1974.667 kb on - strand at 1974.667 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,972,264 - +0.2 1,972,278 - +1.4 1,972,315 - +0.7 1,972,332 + +0.4 1,972,333 - +0.8 1,972,333 - +0.1 1,972,333 - +0.8 1,972,333 - +1.1 1,972,349 + +0.4 1,972,362 + +0.0 1,972,362 + -0.7 1,972,468 + DZA65_RS09355 0.11 +0.8 1,972,468 + DZA65_RS09355 0.11 +0.6 1,972,490 + DZA65_RS09355 0.14 -0.8 1,972,491 - DZA65_RS09355 0.14 -0.2 1,972,491 - DZA65_RS09355 0.14 -1.8 1,972,491 - DZA65_RS09355 0.14 -0.3 1,972,504 - DZA65_RS09355 0.16 +1.4 1,972,504 - DZA65_RS09355 0.16 +1.4 1,972,519 - DZA65_RS09355 0.18 +0.2 1,972,519 - DZA65_RS09355 0.18 +0.4 1,972,529 - DZA65_RS09355 0.19 -1.0 1,972,529 - DZA65_RS09355 0.19 -1.9 1,972,616 + DZA65_RS09355 0.30 -0.2 1,972,616 + DZA65_RS09355 0.30 +0.9 1,972,616 + DZA65_RS09355 0.30 -0.7 1,972,616 + DZA65_RS09355 0.30 -1.2 1,972,616 + DZA65_RS09355 0.30 +1.0 1,972,616 + DZA65_RS09355 0.30 -0.3 1,972,617 - DZA65_RS09355 0.30 -1.2 1,972,617 - DZA65_RS09355 0.30 -1.5 1,972,617 - DZA65_RS09355 0.30 +1.0 1,972,617 - DZA65_RS09355 0.30 +0.6 1,972,617 - DZA65_RS09355 0.30 -1.6 1,972,617 - DZA65_RS09355 0.30 -0.4 1,972,617 - DZA65_RS09355 0.30 +0.8 1,972,618 + DZA65_RS09355 0.30 +1.1 1,972,618 + DZA65_RS09355 0.30 -0.4 1,972,618 + DZA65_RS09355 0.30 -1.2 1,972,618 + DZA65_RS09355 0.30 -1.2 1,972,619 - DZA65_RS09355 0.30 +0.2 1,972,722 - DZA65_RS09355 0.43 -0.9 1,972,799 + DZA65_RS09355 0.52 +0.2 1,972,799 + DZA65_RS09355 0.52 +0.7 1,972,800 - DZA65_RS09355 0.53 +0.3 1,972,802 + DZA65_RS09355 0.53 -0.7 1,972,802 + DZA65_RS09355 0.53 -0.6 1,972,802 + DZA65_RS09355 0.53 -1.3 1,972,803 - DZA65_RS09355 0.53 -1.2 1,972,803 - DZA65_RS09355 0.53 -1.6 1,972,832 + DZA65_RS09355 0.57 -0.9 1,972,903 + DZA65_RS09355 0.65 -0.6 1,972,904 - DZA65_RS09355 0.65 +0.4 1,972,904 - DZA65_RS09355 0.65 +1.0 1,972,921 + DZA65_RS09355 0.68 -1.1 1,972,958 + DZA65_RS09355 0.72 +0.1 1,973,034 + DZA65_RS09355 0.82 -0.5 1,973,034 + DZA65_RS09355 0.82 -2.3 1,973,034 + DZA65_RS09355 0.82 +0.4 1,973,034 + DZA65_RS09355 0.82 -1.6 1,973,034 + DZA65_RS09355 0.82 -0.2 1,973,035 - DZA65_RS09355 0.82 +0.8 1,973,035 - DZA65_RS09355 0.82 -0.1 1,973,080 + DZA65_RS09355 0.87 -1.4 1,973,126 + -1.2 1,973,126 + +0.7 1,973,127 - -1.1 1,973,127 - +0.0 1,973,127 - -0.6 1,973,127 - +0.1 1,973,181 - +1.4 1,973,198 + -0.2 1,973,201 - +0.3 1,973,201 - +0.4 1,973,201 - +1.0 1,973,242 + -0.2 1,973,287 + +2.4 1,973,288 - +0.1 1,973,338 + DZA65_RS09360 0.16 +0.5 1,973,386 + DZA65_RS09360 0.27 -1.3 1,973,439 - DZA65_RS09360 0.39 -0.8 1,973,439 - DZA65_RS09360 0.39 +0.1 1,973,439 - DZA65_RS09360 0.39 +0.2 1,973,439 - DZA65_RS09360 0.39 -0.6 1,973,488 - DZA65_RS09360 0.49 +0.4 1,973,488 - DZA65_RS09360 0.49 +1.4 1,973,500 + DZA65_RS09360 0.52 -0.4 1,973,501 - DZA65_RS09360 0.52 -1.3 1,973,501 - DZA65_RS09360 0.52 -0.3 1,973,501 - DZA65_RS09360 0.52 +0.1 1,973,504 + DZA65_RS09360 0.53 +0.7 1,973,504 + DZA65_RS09360 0.53 -1.4 1,973,534 + DZA65_RS09360 0.60 -1.2 1,973,538 + DZA65_RS09360 0.60 +0.2 1,973,538 + DZA65_RS09360 0.60 +0.3 1,973,538 + DZA65_RS09360 0.60 +0.2 1,973,538 + DZA65_RS09360 0.60 +0.6 1,973,539 - DZA65_RS09360 0.61 -0.1 1,973,573 - DZA65_RS09360 0.68 +0.0 1,973,574 + DZA65_RS09360 0.68 -0.0 1,973,714 + +0.8 1,973,715 - +0.1 1,973,715 - -0.8 1,973,738 - -1.4 1,973,756 + +0.1 1,973,756 + -0.7 1,973,758 + +2.0 1,973,758 + -1.1 1,973,758 + -0.2 1,973,759 - -2.9 1,973,759 - -0.5 1,973,759 - -2.3 1,973,759 - -0.3 1,973,759 - -0.1 1,973,759 - -1.2 1,973,759 - -1.2 1,973,781 - -1.7 1,973,784 + +0.1 1,973,784 + -1.7 1,973,875 + DZA65_RS09365 0.35 -0.9 1,973,875 + DZA65_RS09365 0.35 +0.4 1,973,952 - DZA65_RS09365 0.61 -0.0 1,973,975 - DZA65_RS09365 0.69 -1.2 1,973,975 - DZA65_RS09365 0.69 -1.1 1,973,977 + DZA65_RS09365 0.69 -0.6 1,973,978 - DZA65_RS09365 0.70 +0.8 1,974,001 + DZA65_RS09365 0.77 -0.5 1,974,001 + DZA65_RS09365 0.77 -0.2 1,974,007 - DZA65_RS09365 0.79 -1.4 1,974,026 + DZA65_RS09365 0.86 +0.7 1,974,027 - DZA65_RS09365 0.86 -0.3 1,974,027 - DZA65_RS09365 0.86 -2.4 1,974,035 + DZA65_RS09365 0.89 +0.8 1,974,035 + DZA65_RS09365 0.89 +1.2 1,974,036 - DZA65_RS09365 0.89 +0.7 1,974,036 - DZA65_RS09365 0.89 -0.6 1,974,036 - DZA65_RS09365 0.89 -1.2 1,974,041 - -0.9 1,974,079 + +0.7 1,974,104 - +0.1 1,974,137 - DZA65_RS09370 0.23 +0.0 1,974,168 + DZA65_RS09370 0.41 -0.8 1,974,194 + DZA65_RS09370 0.55 +0.3 1,974,194 + DZA65_RS09370 0.55 -2.4 1,974,194 + DZA65_RS09370 0.55 -0.4 1,974,194 + DZA65_RS09370 0.55 +0.1 1,974,194 + DZA65_RS09370 0.55 -0.8 1,974,195 - DZA65_RS09370 0.56 +1.0 1,974,195 - DZA65_RS09370 0.56 +0.4 1,974,195 - DZA65_RS09370 0.56 +1.0 1,974,288 + DZA65_RS09375 0.19 -1.5 1,974,289 - DZA65_RS09375 0.20 +0.7 1,974,289 - DZA65_RS09375 0.20 -1.8 1,974,335 - +0.7 1,974,335 - -0.8 1,974,466 + DZA65_RS09380 0.54 -0.9 1,974,466 + DZA65_RS09380 0.54 -0.3 1,974,467 - DZA65_RS09380 0.54 +0.1 1,974,467 - DZA65_RS09380 0.54 +1.2 1,974,531 + DZA65_RS09380 0.80 +0.2 1,974,532 - DZA65_RS09380 0.81 -1.9 1,974,532 - DZA65_RS09380 0.81 -1.5 1,974,532 - DZA65_RS09380 0.81 +0.2 1,974,532 - DZA65_RS09380 0.81 -0.2 1,974,532 - DZA65_RS09380 0.81 -0.1 1,974,569 + +1.1 1,974,570 - -0.9 1,974,570 - -1.1 1,974,583 + +0.6 1,974,583 + -1.6 1,974,584 - -1.9 1,974,645 + -0.1 1,974,646 - +0.1 1,974,646 - +1.0 1,974,646 - -0.4 1,974,646 - -2.1 1,974,666 + -0.8 1,974,666 + -0.6 1,974,666 + -1.7 1,974,666 + -1.6 1,974,667 - -0.9 1,974,667 - -1.2
Or see this region's nucleotide sequence