Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS09030

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS09025 and DZA65_RS09030 are separated by 34 nucleotidesDZA65_RS09030 and DZA65_RS09035 overlap by 4 nucleotides DZA65_RS09025: DZA65_RS09025 - iron ABC transporter substrate-binding protein, at 1,899,787 to 1,900,803 _RS09025 DZA65_RS09030: DZA65_RS09030 - iron ABC transporter permease, at 1,900,838 to 1,902,430 _RS09030 DZA65_RS09035: DZA65_RS09035 - ABC transporter ATP-binding protein, at 1,902,427 to 1,903,485 _RS09035 Position (kb) 1900 1901 1902 1903Strain fitness (log2 ratio) -2 -1 0 1 2at 1899.882 kb on + strandat 1899.882 kb on + strandat 1899.882 kb on + strandat 1899.882 kb on + strandat 1899.882 kb on + strandat 1899.883 kb on - strandat 1899.892 kb on + strand, within DZA65_RS09025at 1899.892 kb on + strand, within DZA65_RS09025at 1899.893 kb on - strand, within DZA65_RS09025at 1899.939 kb on + strand, within DZA65_RS09025at 1900.135 kb on + strandat 1900.305 kb on + strand, within DZA65_RS09025at 1900.305 kb on + strand, within DZA65_RS09025at 1900.305 kb on + strand, within DZA65_RS09025at 1900.305 kb on + strand, within DZA65_RS09025at 1900.306 kb on - strand, within DZA65_RS09025at 1900.306 kb on - strand, within DZA65_RS09025at 1900.306 kb on - strand, within DZA65_RS09025at 1900.306 kb on - strand, within DZA65_RS09025at 1900.387 kb on + strand, within DZA65_RS09025at 1900.387 kb on + strand, within DZA65_RS09025at 1900.387 kb on + strand, within DZA65_RS09025at 1900.388 kb on - strand, within DZA65_RS09025at 1900.388 kb on - strand, within DZA65_RS09025at 1900.389 kb on + strand, within DZA65_RS09025at 1900.390 kb on - strand, within DZA65_RS09025at 1900.390 kb on - strand, within DZA65_RS09025at 1900.450 kb on + strand, within DZA65_RS09025at 1900.450 kb on + strand, within DZA65_RS09025at 1900.451 kb on - strand, within DZA65_RS09025at 1900.451 kb on - strand, within DZA65_RS09025at 1900.451 kb on - strand, within DZA65_RS09025at 1900.456 kb on + strand, within DZA65_RS09025at 1900.456 kb on + strand, within DZA65_RS09025at 1900.456 kb on + strand, within DZA65_RS09025at 1900.457 kb on - strand, within DZA65_RS09025at 1900.457 kb on - strand, within DZA65_RS09025at 1900.457 kb on - strand, within DZA65_RS09025at 1900.457 kb on - strand, within DZA65_RS09025at 1900.457 kb on - strand, within DZA65_RS09025at 1900.457 kb on - strand, within DZA65_RS09025at 1900.457 kb on - strand, within DZA65_RS09025at 1900.459 kb on + strand, within DZA65_RS09025at 1900.460 kb on - strand, within DZA65_RS09025at 1900.460 kb on - strand, within DZA65_RS09025at 1900.504 kb on - strand, within DZA65_RS09025at 1900.513 kb on + strand, within DZA65_RS09025at 1900.513 kb on + strand, within DZA65_RS09025at 1900.513 kb on + strand, within DZA65_RS09025at 1900.513 kb on + strand, within DZA65_RS09025at 1900.513 kb on + strand, within DZA65_RS09025at 1900.514 kb on - strand, within DZA65_RS09025at 1900.514 kb on - strand, within DZA65_RS09025at 1900.514 kb on - strand, within DZA65_RS09025at 1900.514 kb on - strand, within DZA65_RS09025at 1900.514 kb on - strand, within DZA65_RS09025at 1900.516 kb on + strand, within DZA65_RS09025at 1900.516 kb on + strand, within DZA65_RS09025at 1900.587 kb on + strand, within DZA65_RS09025at 1900.587 kb on + strand, within DZA65_RS09025at 1900.587 kb on + strand, within DZA65_RS09025at 1900.587 kb on + strandat 1900.587 kb on + strand, within DZA65_RS09025at 1900.587 kb on + strand, within DZA65_RS09025at 1900.588 kb on - strand, within DZA65_RS09025at 1900.588 kb on - strand, within DZA65_RS09025at 1900.588 kb on - strand, within DZA65_RS09025at 1900.670 kb on - strand, within DZA65_RS09025at 1900.801 kb on + strandat 1900.802 kb on - strandat 1900.802 kb on - strandat 1900.802 kb on - strandat 1900.830 kb on + strandat 1900.830 kb on + strandat 1900.830 kb on + strandat 1900.831 kb on - strandat 1900.837 kb on + strandat 1900.837 kb on + strandat 1900.837 kb on + strandat 1900.837 kb on + strandat 1900.838 kb on - strandat 1900.838 kb on - strandat 1900.838 kb on - strandat 1900.838 kb on - strandat 1900.838 kb on - strandat 1901.020 kb on - strand, within DZA65_RS09030at 1901.062 kb on + strand, within DZA65_RS09030at 1901.062 kb on + strand, within DZA65_RS09030at 1901.062 kb on + strand, within DZA65_RS09030at 1901.063 kb on - strand, within DZA65_RS09030at 1901.063 kb on - strandat 1901.063 kb on - strand, within DZA65_RS09030at 1901.063 kb on - strand, within DZA65_RS09030at 1901.065 kb on + strand, within DZA65_RS09030at 1901.066 kb on - strand, within DZA65_RS09030at 1901.070 kb on + strandat 1901.071 kb on - strand, within DZA65_RS09030at 1901.216 kb on + strand, within DZA65_RS09030at 1901.296 kb on + strand, within DZA65_RS09030at 1901.297 kb on - strand, within DZA65_RS09030at 1901.297 kb on - strand, within DZA65_RS09030at 1901.300 kb on + strand, within DZA65_RS09030at 1901.301 kb on - strand, within DZA65_RS09030at 1901.301 kb on - strand, within DZA65_RS09030at 1901.301 kb on - strand, within DZA65_RS09030at 1901.468 kb on + strand, within DZA65_RS09030at 1901.468 kb on + strand, within DZA65_RS09030at 1901.468 kb on + strand, within DZA65_RS09030at 1901.478 kb on - strand, within DZA65_RS09030at 1901.533 kb on + strand, within DZA65_RS09030at 1901.534 kb on - strand, within DZA65_RS09030at 1901.534 kb on - strand, within DZA65_RS09030at 1901.534 kb on - strand, within DZA65_RS09030at 1901.534 kb on - strand, within DZA65_RS09030at 1901.571 kb on + strand, within DZA65_RS09030at 1901.796 kb on + strand, within DZA65_RS09030at 1901.796 kb on + strand, within DZA65_RS09030at 1901.796 kb on + strand, within DZA65_RS09030at 1901.796 kb on + strand, within DZA65_RS09030at 1901.796 kb on + strand, within DZA65_RS09030at 1901.796 kb on + strand, within DZA65_RS09030at 1901.797 kb on - strand, within DZA65_RS09030at 1901.924 kb on + strand, within DZA65_RS09030at 1901.948 kb on + strand, within DZA65_RS09030at 1901.948 kb on + strand, within DZA65_RS09030at 1901.948 kb on + strand, within DZA65_RS09030at 1901.948 kb on + strand, within DZA65_RS09030at 1901.948 kb on + strand, within DZA65_RS09030at 1901.948 kb on + strand, within DZA65_RS09030at 1901.948 kb on + strand, within DZA65_RS09030at 1901.948 kb on + strand, within DZA65_RS09030at 1901.949 kb on - strand, within DZA65_RS09030at 1901.949 kb on - strand, within DZA65_RS09030at 1901.949 kb on - strand, within DZA65_RS09030at 1901.949 kb on - strand, within DZA65_RS09030at 1901.949 kb on - strand, within DZA65_RS09030at 1901.949 kb on - strand, within DZA65_RS09030at 1901.949 kb on - strand, within DZA65_RS09030at 1901.949 kb on - strand, within DZA65_RS09030at 1902.010 kb on + strand, within DZA65_RS09030at 1902.011 kb on - strand, within DZA65_RS09030at 1902.026 kb on + strand, within DZA65_RS09030at 1902.027 kb on - strand, within DZA65_RS09030at 1902.027 kb on - strand, within DZA65_RS09030at 1902.027 kb on - strand, within DZA65_RS09030at 1902.027 kb on - strand, within DZA65_RS09030at 1902.041 kb on - strand, within DZA65_RS09030at 1902.056 kb on + strand, within DZA65_RS09030at 1902.056 kb on + strand, within DZA65_RS09030at 1902.056 kb on + strand, within DZA65_RS09030at 1902.057 kb on - strand, within DZA65_RS09030at 1902.057 kb on - strand, within DZA65_RS09030at 1902.057 kb on - strand, within DZA65_RS09030at 1902.057 kb on - strand, within DZA65_RS09030at 1902.070 kb on + strand, within DZA65_RS09030at 1902.070 kb on + strand, within DZA65_RS09030at 1902.071 kb on - strand, within DZA65_RS09030at 1902.071 kb on - strand, within DZA65_RS09030at 1902.071 kb on - strand, within DZA65_RS09030at 1902.252 kb on + strand, within DZA65_RS09030at 1902.252 kb on + strand, within DZA65_RS09030at 1902.253 kb on - strand, within DZA65_RS09030at 1902.332 kb on + strandat 1902.332 kb on + strandat 1902.332 kb on + strandat 1902.332 kb on + strandat 1902.333 kb on - strandat 1902.333 kb on - strandat 1902.333 kb on - strandat 1902.333 kb on - strandat 1902.333 kb on - strandat 1902.333 kb on - strandat 1902.333 kb on - strandat 1902.333 kb on - strandat 1902.333 kb on - strandat 1902.361 kb on + strandat 1902.398 kb on + strandat 1902.398 kb on + strandat 1902.416 kb on - strandat 1902.426 kb on + strandat 1902.426 kb on + strandat 1902.427 kb on - strandat 1902.427 kb on - strandat 1902.432 kb on + strandat 1902.432 kb on + strandat 1902.433 kb on - strandat 1902.433 kb on - strandat 1902.433 kb on - strandat 1902.445 kb on + strandat 1902.708 kb on + strand, within DZA65_RS09035at 1903.096 kb on + strand, within DZA65_RS09035at 1903.097 kb on - strand, within DZA65_RS09035at 1903.097 kb on - strand, within DZA65_RS09035at 1903.360 kb on - strand, within DZA65_RS09035at 1903.379 kb on + strand, within DZA65_RS09035at 1903.379 kb on + strand, within DZA65_RS09035at 1903.380 kb on - strandat 1903.380 kb on - strandat 1903.380 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,899,882 + -2.1
1,899,882 + -1.8
1,899,882 + -0.9
1,899,882 + -1.6
1,899,882 + +0.1
1,899,883 - +0.2
1,899,892 + DZA65_RS09025 0.10 -1.1
1,899,892 + DZA65_RS09025 0.10 -0.3
1,899,893 - DZA65_RS09025 0.10 +0.1
1,899,939 + DZA65_RS09025 0.15 -0.2
1,900,135 + -0.2
1,900,305 + DZA65_RS09025 0.51 -0.4
1,900,305 + DZA65_RS09025 0.51 -0.9
1,900,305 + DZA65_RS09025 0.51 -0.2
1,900,305 + DZA65_RS09025 0.51 +1.4
1,900,306 - DZA65_RS09025 0.51 -1.4
1,900,306 - DZA65_RS09025 0.51 +1.1
1,900,306 - DZA65_RS09025 0.51 -0.5
1,900,306 - DZA65_RS09025 0.51 -0.7
1,900,387 + DZA65_RS09025 0.59 -1.1
1,900,387 + DZA65_RS09025 0.59 +0.7
1,900,387 + DZA65_RS09025 0.59 -2.1
1,900,388 - DZA65_RS09025 0.59 +1.0
1,900,388 - DZA65_RS09025 0.59 +0.9
1,900,389 + DZA65_RS09025 0.59 +0.4
1,900,390 - DZA65_RS09025 0.59 +0.6
1,900,390 - DZA65_RS09025 0.59 -1.2
1,900,450 + DZA65_RS09025 0.65 -0.8
1,900,450 + DZA65_RS09025 0.65 +0.8
1,900,451 - DZA65_RS09025 0.65 -0.5
1,900,451 - DZA65_RS09025 0.65 +1.1
1,900,451 - DZA65_RS09025 0.65 -1.8
1,900,456 + DZA65_RS09025 0.66 -0.2
1,900,456 + DZA65_RS09025 0.66 -1.1
1,900,456 + DZA65_RS09025 0.66 -1.2
1,900,457 - DZA65_RS09025 0.66 -1.6
1,900,457 - DZA65_RS09025 0.66 -0.3
1,900,457 - DZA65_RS09025 0.66 +1.8
1,900,457 - DZA65_RS09025 0.66 -0.2
1,900,457 - DZA65_RS09025 0.66 -0.3
1,900,457 - DZA65_RS09025 0.66 +1.1
1,900,457 - DZA65_RS09025 0.66 +0.8
1,900,459 + DZA65_RS09025 0.66 +0.4
1,900,460 - DZA65_RS09025 0.66 -0.3
1,900,460 - DZA65_RS09025 0.66 +0.1
1,900,504 - DZA65_RS09025 0.71 -0.4
1,900,513 + DZA65_RS09025 0.71 +1.1
1,900,513 + DZA65_RS09025 0.71 +0.7
1,900,513 + DZA65_RS09025 0.71 +0.2
1,900,513 + DZA65_RS09025 0.71 -0.0
1,900,513 + DZA65_RS09025 0.71 -0.2
1,900,514 - DZA65_RS09025 0.71 +0.7
1,900,514 - DZA65_RS09025 0.71 -0.4
1,900,514 - DZA65_RS09025 0.71 -0.0
1,900,514 - DZA65_RS09025 0.71 -0.8
1,900,514 - DZA65_RS09025 0.71 -0.3
1,900,516 + DZA65_RS09025 0.72 -0.2
1,900,516 + DZA65_RS09025 0.72 -0.2
1,900,587 + DZA65_RS09025 0.79 -0.9
1,900,587 + DZA65_RS09025 0.79 -0.3
1,900,587 + DZA65_RS09025 0.79 +0.8
1,900,587 + +1.4
1,900,587 + DZA65_RS09025 0.79 -0.9
1,900,587 + DZA65_RS09025 0.79 +0.1
1,900,588 - DZA65_RS09025 0.79 -0.6
1,900,588 - DZA65_RS09025 0.79 -1.2
1,900,588 - DZA65_RS09025 0.79 +1.4
1,900,670 - DZA65_RS09025 0.87 -0.4
1,900,801 + -1.2
1,900,802 - -0.4
1,900,802 - +0.2
1,900,802 - -0.6
1,900,830 + -1.0
1,900,830 + -2.7
1,900,830 + -0.4
1,900,831 - -1.8
1,900,837 + +0.2
1,900,837 + -0.4
1,900,837 + +0.6
1,900,837 + -0.6
1,900,838 - +0.3
1,900,838 - +0.6
1,900,838 - -0.9
1,900,838 - -0.2
1,900,838 - -0.0
1,901,020 - DZA65_RS09030 0.11 +0.3
1,901,062 + DZA65_RS09030 0.14 +1.8
1,901,062 + DZA65_RS09030 0.14 -1.3
1,901,062 + DZA65_RS09030 0.14 -0.3
1,901,063 - DZA65_RS09030 0.14 -1.9
1,901,063 - +0.8
1,901,063 - DZA65_RS09030 0.14 -0.1
1,901,063 - DZA65_RS09030 0.14 -0.2
1,901,065 + DZA65_RS09030 0.14 -1.9
1,901,066 - DZA65_RS09030 0.14 -0.2
1,901,070 + +2.0
1,901,071 - DZA65_RS09030 0.15 -2.4
1,901,216 + DZA65_RS09030 0.24 -0.5
1,901,296 + DZA65_RS09030 0.29 -1.3
1,901,297 - DZA65_RS09030 0.29 +0.4
1,901,297 - DZA65_RS09030 0.29 -0.6
1,901,300 + DZA65_RS09030 0.29 -0.1
1,901,301 - DZA65_RS09030 0.29 -1.2
1,901,301 - DZA65_RS09030 0.29 -0.7
1,901,301 - DZA65_RS09030 0.29 -1.9
1,901,468 + DZA65_RS09030 0.40 -1.6
1,901,468 + DZA65_RS09030 0.40 -1.2
1,901,468 + DZA65_RS09030 0.40 -1.9
1,901,478 - DZA65_RS09030 0.40 +0.1
1,901,533 + DZA65_RS09030 0.44 -1.2
1,901,534 - DZA65_RS09030 0.44 +1.8
1,901,534 - DZA65_RS09030 0.44 -1.7
1,901,534 - DZA65_RS09030 0.44 -0.4
1,901,534 - DZA65_RS09030 0.44 -0.3
1,901,571 + DZA65_RS09030 0.46 +0.7
1,901,796 + DZA65_RS09030 0.60 +0.6
1,901,796 + DZA65_RS09030 0.60 -1.2
1,901,796 + DZA65_RS09030 0.60 -0.2
1,901,796 + DZA65_RS09030 0.60 +0.1
1,901,796 + DZA65_RS09030 0.60 -1.1
1,901,796 + DZA65_RS09030 0.60 -1.9
1,901,797 - DZA65_RS09030 0.60 -0.9
1,901,924 + DZA65_RS09030 0.68 -1.1
1,901,948 + DZA65_RS09030 0.70 +0.7
1,901,948 + DZA65_RS09030 0.70 +0.8
1,901,948 + DZA65_RS09030 0.70 -0.3
1,901,948 + DZA65_RS09030 0.70 -0.3
1,901,948 + DZA65_RS09030 0.70 -0.8
1,901,948 + DZA65_RS09030 0.70 +0.1
1,901,948 + DZA65_RS09030 0.70 +1.2
1,901,948 + DZA65_RS09030 0.70 -0.2
1,901,949 - DZA65_RS09030 0.70 -0.7
1,901,949 - DZA65_RS09030 0.70 -0.4
1,901,949 - DZA65_RS09030 0.70 +1.7
1,901,949 - DZA65_RS09030 0.70 -1.4
1,901,949 - DZA65_RS09030 0.70 -0.8
1,901,949 - DZA65_RS09030 0.70 -0.1
1,901,949 - DZA65_RS09030 0.70 +0.2
1,901,949 - DZA65_RS09030 0.70 -0.8
1,902,010 + DZA65_RS09030 0.74 -1.1
1,902,011 - DZA65_RS09030 0.74 -0.4
1,902,026 + DZA65_RS09030 0.75 -0.2
1,902,027 - DZA65_RS09030 0.75 -1.2
1,902,027 - DZA65_RS09030 0.75 +0.1
1,902,027 - DZA65_RS09030 0.75 +0.4
1,902,027 - DZA65_RS09030 0.75 -1.2
1,902,041 - DZA65_RS09030 0.76 -0.9
1,902,056 + DZA65_RS09030 0.76 +0.4
1,902,056 + DZA65_RS09030 0.76 +0.2
1,902,056 + DZA65_RS09030 0.76 -0.9
1,902,057 - DZA65_RS09030 0.77 -1.4
1,902,057 - DZA65_RS09030 0.77 -1.8
1,902,057 - DZA65_RS09030 0.77 -1.4
1,902,057 - DZA65_RS09030 0.77 -0.6
1,902,070 + DZA65_RS09030 0.77 -1.5
1,902,070 + DZA65_RS09030 0.77 -1.4
1,902,071 - DZA65_RS09030 0.77 -1.9
1,902,071 - DZA65_RS09030 0.77 +1.0
1,902,071 - DZA65_RS09030 0.77 -1.2
1,902,252 + DZA65_RS09030 0.89 -0.3
1,902,252 + DZA65_RS09030 0.89 -1.1
1,902,253 - DZA65_RS09030 0.89 +1.2
1,902,332 + +0.4
1,902,332 + +1.4
1,902,332 + +0.4
1,902,332 + -0.9
1,902,333 - -0.9
1,902,333 - -1.5
1,902,333 - -1.6
1,902,333 - -0.1
1,902,333 - -0.8
1,902,333 - +1.4
1,902,333 - +0.3
1,902,333 - +0.6
1,902,333 - +0.4
1,902,361 + +0.4
1,902,398 + -0.2
1,902,398 + -1.9
1,902,416 - -1.2
1,902,426 + -0.2
1,902,426 + -1.2
1,902,427 - -0.4
1,902,427 - -0.2
1,902,432 + -1.7
1,902,432 + -1.3
1,902,433 - -1.0
1,902,433 - -1.1
1,902,433 - +2.0
1,902,445 + -1.3
1,902,708 + DZA65_RS09035 0.27 -0.4
1,903,096 + DZA65_RS09035 0.63 -0.2
1,903,097 - DZA65_RS09035 0.63 -0.8
1,903,097 - DZA65_RS09035 0.63 -2.1
1,903,360 - DZA65_RS09035 0.88 -1.5
1,903,379 + DZA65_RS09035 0.90 -0.4
1,903,379 + DZA65_RS09035 0.90 +0.4
1,903,380 - -0.3
1,903,380 - -0.9
1,903,380 - +0.1

Or see this region's nucleotide sequence