Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS08895

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS08885 and DZA65_RS08890 are separated by 94 nucleotidesDZA65_RS08890 and DZA65_RS08895 are separated by 418 nucleotidesDZA65_RS08895 and DZA65_RS08900 are separated by 93 nucleotides DZA65_RS08885: DZA65_RS08885 - DgsA anti-repressor MtfA, at 1,873,392 to 1,874,183 _RS08885 DZA65_RS08890: DZA65_RS08890 - tRNA-Ser, at 1,874,278 to 1,874,367 _RS08890 DZA65_RS08895: DZA65_RS08895 - DUF3168 domain-containing protein, at 1,874,786 to 1,875,133 _RS08895 DZA65_RS08900: DZA65_RS08900 - discoidin domain-containing protein, at 1,875,227 to 1,877,464 _RS08900 Position (kb) 1874 1875 1876Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1873.842 kb on + strand, within DZA65_RS08885at 1873.842 kb on + strand, within DZA65_RS08885at 1873.843 kb on - strand, within DZA65_RS08885at 1873.843 kb on - strand, within DZA65_RS08885at 1873.843 kb on - strand, within DZA65_RS08885at 1873.843 kb on - strand, within DZA65_RS08885at 1873.843 kb on - strand, within DZA65_RS08885at 1873.898 kb on + strand, within DZA65_RS08885at 1873.898 kb on + strandat 1873.920 kb on + strand, within DZA65_RS08885at 1873.920 kb on + strand, within DZA65_RS08885at 1873.921 kb on - strand, within DZA65_RS08885at 1873.981 kb on - strand, within DZA65_RS08885at 1874.001 kb on + strand, within DZA65_RS08885at 1874.001 kb on + strand, within DZA65_RS08885at 1874.002 kb on - strand, within DZA65_RS08885at 1874.075 kb on + strand, within DZA65_RS08885at 1874.197 kb on - strandat 1874.197 kb on - strandat 1874.237 kb on + strandat 1874.247 kb on + strandat 1874.248 kb on - strandat 1874.248 kb on - strandat 1874.248 kb on - strandat 1874.262 kb on + strandat 1874.262 kb on + strandat 1874.263 kb on - strandat 1874.263 kb on - strandat 1874.263 kb on - strandat 1874.263 kb on - strandat 1874.263 kb on - strandat 1874.391 kb on - strandat 1874.453 kb on - strandat 1874.463 kb on + strandat 1874.463 kb on + strandat 1874.464 kb on - strandat 1874.464 kb on - strandat 1874.464 kb on - strandat 1874.482 kb on + strandat 1874.482 kb on + strandat 1874.482 kb on + strandat 1874.482 kb on + strandat 1874.482 kb on + strandat 1874.483 kb on - strandat 1874.483 kb on - strandat 1874.483 kb on - strandat 1874.483 kb on - strandat 1874.505 kb on + strandat 1874.517 kb on - strandat 1874.517 kb on - strandat 1874.588 kb on - strandat 1874.847 kb on - strand, within DZA65_RS08895at 1874.873 kb on - strand, within DZA65_RS08895at 1874.873 kb on - strand, within DZA65_RS08895at 1874.885 kb on - strand, within DZA65_RS08895at 1874.963 kb on - strand, within DZA65_RS08895at 1874.981 kb on + strand, within DZA65_RS08895at 1874.981 kb on + strand, within DZA65_RS08895at 1874.981 kb on + strand, within DZA65_RS08895at 1874.982 kb on - strand, within DZA65_RS08895at 1875.103 kb on + strandat 1875.284 kb on - strandat 1875.311 kb on - strandat 1875.314 kb on - strandat 1875.317 kb on - strandat 1875.317 kb on - strandat 1875.317 kb on - strandat 1875.337 kb on - strandat 1875.361 kb on + strandat 1875.368 kb on + strandat 1875.419 kb on + strandat 1875.419 kb on + strandat 1875.419 kb on + strandat 1875.420 kb on - strandat 1875.420 kb on - strandat 1875.420 kb on - strandat 1875.420 kb on - strandat 1875.422 kb on - strandat 1875.450 kb on - strandat 1875.478 kb on + strand, within DZA65_RS08900at 1875.478 kb on + strand, within DZA65_RS08900at 1875.478 kb on + strand, within DZA65_RS08900at 1875.478 kb on + strand, within DZA65_RS08900at 1875.479 kb on - strand, within DZA65_RS08900at 1875.479 kb on - strand, within DZA65_RS08900at 1875.497 kb on + strand, within DZA65_RS08900at 1875.497 kb on + strand, within DZA65_RS08900at 1875.497 kb on + strand, within DZA65_RS08900at 1875.497 kb on + strand, within DZA65_RS08900at 1875.497 kb on + strand, within DZA65_RS08900at 1875.497 kb on + strand, within DZA65_RS08900at 1875.498 kb on - strand, within DZA65_RS08900at 1875.498 kb on - strand, within DZA65_RS08900at 1875.664 kb on + strand, within DZA65_RS08900at 1875.664 kb on + strand, within DZA65_RS08900at 1875.664 kb on + strand, within DZA65_RS08900at 1875.754 kb on + strand, within DZA65_RS08900at 1875.761 kb on - strand, within DZA65_RS08900at 1875.761 kb on - strand, within DZA65_RS08900at 1875.761 kb on - strand, within DZA65_RS08900at 1875.761 kb on - strand, within DZA65_RS08900at 1875.766 kb on + strand, within DZA65_RS08900at 1875.766 kb on + strand, within DZA65_RS08900at 1875.766 kb on + strand, within DZA65_RS08900at 1875.767 kb on - strand, within DZA65_RS08900at 1875.767 kb on - strand, within DZA65_RS08900at 1875.767 kb on - strand, within DZA65_RS08900at 1875.767 kb on - strand, within DZA65_RS08900at 1875.805 kb on + strand, within DZA65_RS08900at 1875.854 kb on + strand, within DZA65_RS08900at 1875.854 kb on + strand, within DZA65_RS08900at 1875.854 kb on + strand, within DZA65_RS08900at 1875.854 kb on + strand, within DZA65_RS08900at 1875.854 kb on + strand, within DZA65_RS08900at 1875.855 kb on - strand, within DZA65_RS08900at 1875.859 kb on + strand, within DZA65_RS08900at 1875.860 kb on - strand, within DZA65_RS08900at 1875.883 kb on + strand, within DZA65_RS08900at 1875.916 kb on + strand, within DZA65_RS08900at 1875.932 kb on + strand, within DZA65_RS08900at 1875.932 kb on + strand, within DZA65_RS08900at 1875.933 kb on - strand, within DZA65_RS08900at 1875.934 kb on + strand, within DZA65_RS08900at 1875.935 kb on - strand, within DZA65_RS08900at 1875.935 kb on - strand, within DZA65_RS08900at 1875.950 kb on - strand, within DZA65_RS08900at 1875.972 kb on + strand, within DZA65_RS08900at 1875.972 kb on + strand, within DZA65_RS08900at 1875.973 kb on - strand, within DZA65_RS08900at 1875.973 kb on - strand, within DZA65_RS08900at 1876.046 kb on + strand, within DZA65_RS08900at 1876.046 kb on + strand, within DZA65_RS08900at 1876.046 kb on + strand, within DZA65_RS08900at 1876.047 kb on - strand, within DZA65_RS08900at 1876.048 kb on + strand, within DZA65_RS08900at 1876.048 kb on + strand, within DZA65_RS08900at 1876.048 kb on + strand, within DZA65_RS08900at 1876.049 kb on - strand, within DZA65_RS08900at 1876.049 kb on - strand, within DZA65_RS08900at 1876.061 kb on + strand, within DZA65_RS08900at 1876.061 kb on + strand, within DZA65_RS08900at 1876.061 kb on + strand, within DZA65_RS08900at 1876.061 kb on + strand, within DZA65_RS08900at 1876.061 kb on + strand, within DZA65_RS08900at 1876.062 kb on - strand, within DZA65_RS08900at 1876.062 kb on - strand, within DZA65_RS08900at 1876.062 kb on - strand, within DZA65_RS08900at 1876.070 kb on - strand, within DZA65_RS08900at 1876.111 kb on + strand, within DZA65_RS08900at 1876.112 kb on - strand, within DZA65_RS08900

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,873,842 + DZA65_RS08885 0.57 -0.2
1,873,842 + DZA65_RS08885 0.57 -0.9
1,873,843 - DZA65_RS08885 0.57 +0.7
1,873,843 - DZA65_RS08885 0.57 -2.1
1,873,843 - DZA65_RS08885 0.57 -1.8
1,873,843 - DZA65_RS08885 0.57 +0.7
1,873,843 - DZA65_RS08885 0.57 -0.7
1,873,898 + DZA65_RS08885 0.64 -1.2
1,873,898 + +0.4
1,873,920 + DZA65_RS08885 0.67 +0.9
1,873,920 + DZA65_RS08885 0.67 -0.5
1,873,921 - DZA65_RS08885 0.67 -1.2
1,873,981 - DZA65_RS08885 0.74 +1.1
1,874,001 + DZA65_RS08885 0.77 -0.0
1,874,001 + DZA65_RS08885 0.77 -1.2
1,874,002 - DZA65_RS08885 0.77 +0.7
1,874,075 + DZA65_RS08885 0.86 -1.0
1,874,197 - +0.1
1,874,197 - -2.5
1,874,237 + -1.4
1,874,247 + +0.2
1,874,248 - -1.0
1,874,248 - +0.9
1,874,248 - +0.7
1,874,262 + -0.4
1,874,262 + -0.5
1,874,263 - -2.1
1,874,263 - -3.0
1,874,263 - -1.0
1,874,263 - -1.6
1,874,263 - +0.5
1,874,391 - +0.7
1,874,453 - -0.4
1,874,463 + +0.0
1,874,463 + -1.2
1,874,464 - -0.2
1,874,464 - +0.4
1,874,464 - -0.5
1,874,482 + -1.2
1,874,482 + -0.6
1,874,482 + +0.2
1,874,482 + -1.2
1,874,482 + -0.2
1,874,483 - -1.0
1,874,483 - +1.4
1,874,483 - +1.0
1,874,483 - -2.2
1,874,505 + +0.4
1,874,517 - -2.2
1,874,517 - -1.1
1,874,588 - -1.8
1,874,847 - DZA65_RS08895 0.18 -0.3
1,874,873 - DZA65_RS08895 0.25 -0.9
1,874,873 - DZA65_RS08895 0.25 -0.5
1,874,885 - DZA65_RS08895 0.28 -0.9
1,874,963 - DZA65_RS08895 0.51 -1.6
1,874,981 + DZA65_RS08895 0.56 -1.6
1,874,981 + DZA65_RS08895 0.56 -1.2
1,874,981 + DZA65_RS08895 0.56 -0.6
1,874,982 - DZA65_RS08895 0.56 +0.1
1,875,103 + -0.8
1,875,284 - +0.2
1,875,311 - -0.9
1,875,314 - +0.1
1,875,317 - +0.2
1,875,317 - +1.1
1,875,317 - +1.2
1,875,337 - -0.1
1,875,361 + -0.9
1,875,368 + -0.6
1,875,419 + +0.4
1,875,419 + +0.6
1,875,419 + -1.0
1,875,420 - +1.0
1,875,420 - +1.4
1,875,420 - -0.2
1,875,420 - -0.8
1,875,422 - -0.0
1,875,450 - +0.1
1,875,478 + DZA65_RS08900 0.11 -0.9
1,875,478 + DZA65_RS08900 0.11 -0.8
1,875,478 + DZA65_RS08900 0.11 +1.8
1,875,478 + DZA65_RS08900 0.11 -0.9
1,875,479 - DZA65_RS08900 0.11 -2.5
1,875,479 - DZA65_RS08900 0.11 -1.6
1,875,497 + DZA65_RS08900 0.12 +1.1
1,875,497 + DZA65_RS08900 0.12 +2.4
1,875,497 + DZA65_RS08900 0.12 -1.2
1,875,497 + DZA65_RS08900 0.12 -1.4
1,875,497 + DZA65_RS08900 0.12 -0.8
1,875,497 + DZA65_RS08900 0.12 -0.1
1,875,498 - DZA65_RS08900 0.12 -0.4
1,875,498 - DZA65_RS08900 0.12 -0.4
1,875,664 + DZA65_RS08900 0.20 -0.9
1,875,664 + DZA65_RS08900 0.20 +0.4
1,875,664 + DZA65_RS08900 0.20 -0.2
1,875,754 + DZA65_RS08900 0.24 -0.6
1,875,761 - DZA65_RS08900 0.24 +1.1
1,875,761 - DZA65_RS08900 0.24 -0.6
1,875,761 - DZA65_RS08900 0.24 -1.2
1,875,761 - DZA65_RS08900 0.24 -0.3
1,875,766 + DZA65_RS08900 0.24 -0.2
1,875,766 + DZA65_RS08900 0.24 -1.8
1,875,766 + DZA65_RS08900 0.24 +0.7
1,875,767 - DZA65_RS08900 0.24 +1.8
1,875,767 - DZA65_RS08900 0.24 +0.1
1,875,767 - DZA65_RS08900 0.24 -1.2
1,875,767 - DZA65_RS08900 0.24 -0.6
1,875,805 + DZA65_RS08900 0.26 -0.9
1,875,854 + DZA65_RS08900 0.28 -1.4
1,875,854 + DZA65_RS08900 0.28 -3.1
1,875,854 + DZA65_RS08900 0.28 -0.5
1,875,854 + DZA65_RS08900 0.28 -1.6
1,875,854 + DZA65_RS08900 0.28 +0.0
1,875,855 - DZA65_RS08900 0.28 -0.9
1,875,859 + DZA65_RS08900 0.28 -0.6
1,875,860 - DZA65_RS08900 0.28 -1.3
1,875,883 + DZA65_RS08900 0.29 -1.4
1,875,916 + DZA65_RS08900 0.31 -0.9
1,875,932 + DZA65_RS08900 0.32 +0.2
1,875,932 + DZA65_RS08900 0.32 -0.2
1,875,933 - DZA65_RS08900 0.32 -0.9
1,875,934 + DZA65_RS08900 0.32 -1.3
1,875,935 - DZA65_RS08900 0.32 +0.8
1,875,935 - DZA65_RS08900 0.32 +2.0
1,875,950 - DZA65_RS08900 0.32 -0.1
1,875,972 + DZA65_RS08900 0.33 -1.6
1,875,972 + DZA65_RS08900 0.33 +1.4
1,875,973 - DZA65_RS08900 0.33 -0.2
1,875,973 - DZA65_RS08900 0.33 -2.1
1,876,046 + DZA65_RS08900 0.37 +1.8
1,876,046 + DZA65_RS08900 0.37 -0.4
1,876,046 + DZA65_RS08900 0.37 +0.5
1,876,047 - DZA65_RS08900 0.37 +0.4
1,876,048 + DZA65_RS08900 0.37 +0.4
1,876,048 + DZA65_RS08900 0.37 -0.8
1,876,048 + DZA65_RS08900 0.37 -0.2
1,876,049 - DZA65_RS08900 0.37 -0.4
1,876,049 - DZA65_RS08900 0.37 -0.4
1,876,061 + DZA65_RS08900 0.37 -2.2
1,876,061 + DZA65_RS08900 0.37 -0.1
1,876,061 + DZA65_RS08900 0.37 +0.2
1,876,061 + DZA65_RS08900 0.37 +0.1
1,876,061 + DZA65_RS08900 0.37 +0.9
1,876,062 - DZA65_RS08900 0.37 -1.3
1,876,062 - DZA65_RS08900 0.37 -1.5
1,876,062 - DZA65_RS08900 0.37 +0.1
1,876,070 - DZA65_RS08900 0.38 -0.9
1,876,111 + DZA65_RS08900 0.39 +0.8
1,876,112 - DZA65_RS08900 0.40 -1.6

Or see this region's nucleotide sequence