Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS08610

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS08605 and DZA65_RS08610 are separated by 51 nucleotidesDZA65_RS08610 and DZA65_RS08615 are separated by 70 nucleotides DZA65_RS08605: DZA65_RS08605 - type VI secretion system membrane subunit TssM, at 1,818,152 to 1,821,646 _RS08605 DZA65_RS08610: DZA65_RS08610 - membrane protein, at 1,821,698 to 1,823,131 _RS08610 DZA65_RS08615: DZA65_RS08615 - SEL1-like repeat protein, at 1,823,202 to 1,824,569 _RS08615 Position (kb) 1821 1822 1823 1824Strain fitness (log2 ratio) -2 -1 0 1 2at 1820.759 kb on + strand, within DZA65_RS08605at 1820.760 kb on - strand, within DZA65_RS08605at 1820.765 kb on + strand, within DZA65_RS08605at 1820.765 kb on + strand, within DZA65_RS08605at 1820.766 kb on - strand, within DZA65_RS08605at 1820.766 kb on - strand, within DZA65_RS08605at 1820.873 kb on + strandat 1820.873 kb on + strand, within DZA65_RS08605at 1820.873 kb on + strand, within DZA65_RS08605at 1820.873 kb on + strand, within DZA65_RS08605at 1820.873 kb on + strand, within DZA65_RS08605at 1820.873 kb on + strand, within DZA65_RS08605at 1820.873 kb on + strand, within DZA65_RS08605at 1820.874 kb on - strand, within DZA65_RS08605at 1820.874 kb on - strand, within DZA65_RS08605at 1820.874 kb on - strand, within DZA65_RS08605at 1821.113 kb on + strand, within DZA65_RS08605at 1821.113 kb on + strand, within DZA65_RS08605at 1821.113 kb on + strand, within DZA65_RS08605at 1821.113 kb on + strand, within DZA65_RS08605at 1821.114 kb on - strand, within DZA65_RS08605at 1821.149 kb on - strand, within DZA65_RS08605at 1821.149 kb on - strand, within DZA65_RS08605at 1821.149 kb on - strand, within DZA65_RS08605at 1821.228 kb on + strand, within DZA65_RS08605at 1821.229 kb on - strand, within DZA65_RS08605at 1821.229 kb on - strand, within DZA65_RS08605at 1821.229 kb on - strand, within DZA65_RS08605at 1821.232 kb on + strand, within DZA65_RS08605at 1821.232 kb on + strand, within DZA65_RS08605at 1821.232 kb on + strand, within DZA65_RS08605at 1821.232 kb on + strand, within DZA65_RS08605at 1821.233 kb on - strand, within DZA65_RS08605at 1821.233 kb on - strand, within DZA65_RS08605at 1821.233 kb on - strand, within DZA65_RS08605at 1821.255 kb on + strand, within DZA65_RS08605at 1821.255 kb on + strand, within DZA65_RS08605at 1821.255 kb on + strand, within DZA65_RS08605at 1821.256 kb on - strand, within DZA65_RS08605at 1821.256 kb on - strand, within DZA65_RS08605at 1821.256 kb on - strand, within DZA65_RS08605at 1821.256 kb on - strand, within DZA65_RS08605at 1821.335 kb on + strandat 1821.336 kb on - strandat 1821.382 kb on + strandat 1821.383 kb on - strandat 1821.520 kb on + strandat 1821.520 kb on + strandat 1821.520 kb on + strandat 1821.521 kb on - strandat 1821.521 kb on - strandat 1821.521 kb on - strandat 1821.521 kb on - strandat 1821.573 kb on - strandat 1821.573 kb on - strandat 1821.641 kb on + strandat 1821.641 kb on + strandat 1821.641 kb on + strandat 1821.641 kb on + strandat 1821.642 kb on - strandat 1821.642 kb on - strandat 1821.645 kb on - strandat 1821.697 kb on + strandat 1821.697 kb on + strandat 1821.697 kb on + strandat 1821.698 kb on - strandat 1821.755 kb on + strandat 1821.755 kb on + strandat 1821.766 kb on - strandat 1821.766 kb on - strandat 1821.884 kb on + strand, within DZA65_RS08610at 1821.884 kb on + strand, within DZA65_RS08610at 1821.884 kb on + strand, within DZA65_RS08610at 1821.884 kb on + strand, within DZA65_RS08610at 1821.884 kb on + strandat 1821.884 kb on + strand, within DZA65_RS08610at 1821.885 kb on - strand, within DZA65_RS08610at 1821.885 kb on - strand, within DZA65_RS08610at 1821.885 kb on - strand, within DZA65_RS08610at 1821.885 kb on - strand, within DZA65_RS08610at 1822.064 kb on + strand, within DZA65_RS08610at 1822.065 kb on - strand, within DZA65_RS08610at 1822.065 kb on - strand, within DZA65_RS08610at 1822.065 kb on - strand, within DZA65_RS08610at 1822.098 kb on - strand, within DZA65_RS08610at 1822.098 kb on - strand, within DZA65_RS08610at 1822.199 kb on + strand, within DZA65_RS08610at 1822.199 kb on + strand, within DZA65_RS08610at 1822.271 kb on - strand, within DZA65_RS08610at 1822.271 kb on - strand, within DZA65_RS08610at 1822.411 kb on - strand, within DZA65_RS08610at 1822.515 kb on - strand, within DZA65_RS08610at 1822.565 kb on + strand, within DZA65_RS08610at 1822.566 kb on - strand, within DZA65_RS08610at 1822.567 kb on + strandat 1822.567 kb on + strand, within DZA65_RS08610at 1822.567 kb on + strand, within DZA65_RS08610at 1822.668 kb on - strand, within DZA65_RS08610at 1822.709 kb on + strand, within DZA65_RS08610at 1822.709 kb on + strand, within DZA65_RS08610at 1822.709 kb on + strand, within DZA65_RS08610at 1822.709 kb on + strand, within DZA65_RS08610at 1822.710 kb on - strand, within DZA65_RS08610at 1822.710 kb on - strand, within DZA65_RS08610at 1822.710 kb on - strand, within DZA65_RS08610at 1822.710 kb on - strand, within DZA65_RS08610at 1822.710 kb on - strand, within DZA65_RS08610at 1822.710 kb on - strand, within DZA65_RS08610at 1822.715 kb on + strand, within DZA65_RS08610at 1822.715 kb on + strand, within DZA65_RS08610at 1822.715 kb on + strand, within DZA65_RS08610at 1822.715 kb on + strand, within DZA65_RS08610at 1822.721 kb on + strand, within DZA65_RS08610at 1822.735 kb on - strand, within DZA65_RS08610at 1822.789 kb on + strand, within DZA65_RS08610at 1822.789 kb on + strand, within DZA65_RS08610at 1822.790 kb on - strand, within DZA65_RS08610at 1822.804 kb on - strand, within DZA65_RS08610at 1822.804 kb on - strand, within DZA65_RS08610at 1822.952 kb on + strand, within DZA65_RS08610at 1822.958 kb on - strand, within DZA65_RS08610at 1823.129 kb on + strandat 1823.198 kb on + strandat 1823.221 kb on + strandat 1823.297 kb on + strandat 1823.297 kb on + strandat 1823.297 kb on + strandat 1823.297 kb on + strandat 1823.298 kb on - strandat 1823.298 kb on - strandat 1823.452 kb on + strand, within DZA65_RS08615at 1823.452 kb on + strand, within DZA65_RS08615at 1823.453 kb on - strand, within DZA65_RS08615at 1823.650 kb on - strand, within DZA65_RS08615at 1823.682 kb on + strand, within DZA65_RS08615at 1823.682 kb on + strand, within DZA65_RS08615at 1823.682 kb on + strand, within DZA65_RS08615at 1823.682 kb on + strand, within DZA65_RS08615at 1823.682 kb on + strand, within DZA65_RS08615at 1823.683 kb on - strand, within DZA65_RS08615at 1823.683 kb on - strand, within DZA65_RS08615at 1823.683 kb on - strand, within DZA65_RS08615at 1823.764 kb on - strand, within DZA65_RS08615at 1823.781 kb on + strand, within DZA65_RS08615at 1823.782 kb on - strand, within DZA65_RS08615at 1823.782 kb on - strand, within DZA65_RS08615at 1823.782 kb on - strand, within DZA65_RS08615at 1823.832 kb on + strand, within DZA65_RS08615at 1823.872 kb on + strand, within DZA65_RS08615at 1823.872 kb on + strand, within DZA65_RS08615at 1823.873 kb on - strand, within DZA65_RS08615at 1823.873 kb on - strand, within DZA65_RS08615at 1823.873 kb on - strand, within DZA65_RS08615at 1823.917 kb on - strand, within DZA65_RS08615at 1824.022 kb on - strand, within DZA65_RS08615at 1824.066 kb on + strand, within DZA65_RS08615at 1824.111 kb on + strand, within DZA65_RS08615at 1824.111 kb on + strand, within DZA65_RS08615at 1824.111 kb on + strand, within DZA65_RS08615at 1824.111 kb on + strand, within DZA65_RS08615at 1824.111 kb on + strand, within DZA65_RS08615at 1824.111 kb on + strand, within DZA65_RS08615at 1824.112 kb on - strand, within DZA65_RS08615at 1824.112 kb on - strand, within DZA65_RS08615at 1824.112 kb on - strand, within DZA65_RS08615at 1824.112 kb on - strand, within DZA65_RS08615at 1824.112 kb on - strand, within DZA65_RS08615at 1824.112 kb on - strand, within DZA65_RS08615at 1824.112 kb on - strand, within DZA65_RS08615at 1824.112 kb on - strand, within DZA65_RS08615at 1824.112 kb on - strand, within DZA65_RS08615

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,820,759 + DZA65_RS08605 0.75 -2.0
1,820,760 - DZA65_RS08605 0.75 +0.4
1,820,765 + DZA65_RS08605 0.75 -0.7
1,820,765 + DZA65_RS08605 0.75 -0.8
1,820,766 - DZA65_RS08605 0.75 +1.0
1,820,766 - DZA65_RS08605 0.75 -2.0
1,820,873 + +0.4
1,820,873 + DZA65_RS08605 0.78 +0.6
1,820,873 + DZA65_RS08605 0.78 -1.8
1,820,873 + DZA65_RS08605 0.78 +0.1
1,820,873 + DZA65_RS08605 0.78 -1.8
1,820,873 + DZA65_RS08605 0.78 +0.4
1,820,873 + DZA65_RS08605 0.78 -1.6
1,820,874 - DZA65_RS08605 0.78 -0.8
1,820,874 - DZA65_RS08605 0.78 -0.2
1,820,874 - DZA65_RS08605 0.78 +0.1
1,821,113 + DZA65_RS08605 0.85 +0.4
1,821,113 + DZA65_RS08605 0.85 +0.2
1,821,113 + DZA65_RS08605 0.85 -0.9
1,821,113 + DZA65_RS08605 0.85 -1.0
1,821,114 - DZA65_RS08605 0.85 -0.9
1,821,149 - DZA65_RS08605 0.86 -1.6
1,821,149 - DZA65_RS08605 0.86 -0.9
1,821,149 - DZA65_RS08605 0.86 +0.1
1,821,228 + DZA65_RS08605 0.88 -0.9
1,821,229 - DZA65_RS08605 0.88 -0.8
1,821,229 - DZA65_RS08605 0.88 -1.2
1,821,229 - DZA65_RS08605 0.88 +0.8
1,821,232 + DZA65_RS08605 0.88 +0.1
1,821,232 + DZA65_RS08605 0.88 -2.0
1,821,232 + DZA65_RS08605 0.88 -0.9
1,821,232 + DZA65_RS08605 0.88 -1.6
1,821,233 - DZA65_RS08605 0.88 -0.6
1,821,233 - DZA65_RS08605 0.88 -0.8
1,821,233 - DZA65_RS08605 0.88 +0.4
1,821,255 + DZA65_RS08605 0.89 +0.5
1,821,255 + DZA65_RS08605 0.89 -2.0
1,821,255 + DZA65_RS08605 0.89 -0.2
1,821,256 - DZA65_RS08605 0.89 +2.1
1,821,256 - DZA65_RS08605 0.89 +0.5
1,821,256 - DZA65_RS08605 0.89 -1.6
1,821,256 - DZA65_RS08605 0.89 -0.6
1,821,335 + -0.6
1,821,336 - -0.6
1,821,382 + -0.4
1,821,383 - +0.6
1,821,520 + +0.2
1,821,520 + -1.4
1,821,520 + +0.2
1,821,521 - +0.6
1,821,521 - -0.7
1,821,521 - -1.2
1,821,521 - -0.5
1,821,573 - -1.6
1,821,573 - +0.8
1,821,641 + +0.4
1,821,641 + -0.7
1,821,641 + +1.0
1,821,641 + +0.8
1,821,642 - -1.6
1,821,642 - -1.3
1,821,645 - -0.4
1,821,697 + -0.1
1,821,697 + +0.4
1,821,697 + +0.1
1,821,698 - -0.9
1,821,755 + -0.3
1,821,755 + -0.5
1,821,766 - +0.9
1,821,766 - -1.4
1,821,884 + DZA65_RS08610 0.13 -1.2
1,821,884 + DZA65_RS08610 0.13 +0.4
1,821,884 + DZA65_RS08610 0.13 +0.4
1,821,884 + DZA65_RS08610 0.13 +0.1
1,821,884 + +0.4
1,821,884 + DZA65_RS08610 0.13 -1.6
1,821,885 - DZA65_RS08610 0.13 +1.1
1,821,885 - DZA65_RS08610 0.13 -0.6
1,821,885 - DZA65_RS08610 0.13 +0.1
1,821,885 - DZA65_RS08610 0.13 +0.7
1,822,064 + DZA65_RS08610 0.26 +0.4
1,822,065 - DZA65_RS08610 0.26 -0.0
1,822,065 - DZA65_RS08610 0.26 +0.3
1,822,065 - DZA65_RS08610 0.26 -0.6
1,822,098 - DZA65_RS08610 0.28 -0.2
1,822,098 - DZA65_RS08610 0.28 +0.8
1,822,199 + DZA65_RS08610 0.35 +2.4
1,822,199 + DZA65_RS08610 0.35 -0.7
1,822,271 - DZA65_RS08610 0.40 -0.7
1,822,271 - DZA65_RS08610 0.40 -0.8
1,822,411 - DZA65_RS08610 0.50 +0.4
1,822,515 - DZA65_RS08610 0.57 -0.6
1,822,565 + DZA65_RS08610 0.60 -1.9
1,822,566 - DZA65_RS08610 0.61 -0.8
1,822,567 + +1.4
1,822,567 + DZA65_RS08610 0.61 +0.4
1,822,567 + DZA65_RS08610 0.61 +0.1
1,822,668 - DZA65_RS08610 0.68 +0.1
1,822,709 + DZA65_RS08610 0.71 +1.0
1,822,709 + DZA65_RS08610 0.71 -0.5
1,822,709 + DZA65_RS08610 0.71 -0.6
1,822,709 + DZA65_RS08610 0.71 +1.4
1,822,710 - DZA65_RS08610 0.71 -1.9
1,822,710 - DZA65_RS08610 0.71 +0.8
1,822,710 - DZA65_RS08610 0.71 +0.9
1,822,710 - DZA65_RS08610 0.71 -0.5
1,822,710 - DZA65_RS08610 0.71 -0.3
1,822,710 - DZA65_RS08610 0.71 -0.4
1,822,715 + DZA65_RS08610 0.71 +0.8
1,822,715 + DZA65_RS08610 0.71 +0.2
1,822,715 + DZA65_RS08610 0.71 +1.0
1,822,715 + DZA65_RS08610 0.71 -1.9
1,822,721 + DZA65_RS08610 0.71 -0.3
1,822,735 - DZA65_RS08610 0.72 +1.1
1,822,789 + DZA65_RS08610 0.76 -1.0
1,822,789 + DZA65_RS08610 0.76 -0.5
1,822,790 - DZA65_RS08610 0.76 -0.9
1,822,804 - DZA65_RS08610 0.77 -0.2
1,822,804 - DZA65_RS08610 0.77 -0.4
1,822,952 + DZA65_RS08610 0.87 -0.2
1,822,958 - DZA65_RS08610 0.88 -2.2
1,823,129 + +1.2
1,823,198 + +0.8
1,823,221 + +0.4
1,823,297 + -1.0
1,823,297 + -0.3
1,823,297 + -2.0
1,823,297 + -0.3
1,823,298 - +0.7
1,823,298 - -0.0
1,823,452 + DZA65_RS08615 0.18 -0.2
1,823,452 + DZA65_RS08615 0.18 +0.1
1,823,453 - DZA65_RS08615 0.18 -1.0
1,823,650 - DZA65_RS08615 0.33 +0.3
1,823,682 + DZA65_RS08615 0.35 +0.9
1,823,682 + DZA65_RS08615 0.35 -0.9
1,823,682 + DZA65_RS08615 0.35 -0.2
1,823,682 + DZA65_RS08615 0.35 -0.5
1,823,682 + DZA65_RS08615 0.35 -0.3
1,823,683 - DZA65_RS08615 0.35 -0.0
1,823,683 - DZA65_RS08615 0.35 -1.5
1,823,683 - DZA65_RS08615 0.35 +0.4
1,823,764 - DZA65_RS08615 0.41 -0.2
1,823,781 + DZA65_RS08615 0.42 -1.4
1,823,782 - DZA65_RS08615 0.42 -2.0
1,823,782 - DZA65_RS08615 0.42 -0.3
1,823,782 - DZA65_RS08615 0.42 -0.6
1,823,832 + DZA65_RS08615 0.46 +0.4
1,823,872 + DZA65_RS08615 0.49 +1.0
1,823,872 + DZA65_RS08615 0.49 -0.6
1,823,873 - DZA65_RS08615 0.49 +0.4
1,823,873 - DZA65_RS08615 0.49 -1.7
1,823,873 - DZA65_RS08615 0.49 +0.1
1,823,917 - DZA65_RS08615 0.52 +0.4
1,824,022 - DZA65_RS08615 0.60 -0.2
1,824,066 + DZA65_RS08615 0.63 -0.6
1,824,111 + DZA65_RS08615 0.66 -2.6
1,824,111 + DZA65_RS08615 0.66 -1.6
1,824,111 + DZA65_RS08615 0.66 +0.4
1,824,111 + DZA65_RS08615 0.66 +1.0
1,824,111 + DZA65_RS08615 0.66 -1.2
1,824,111 + DZA65_RS08615 0.66 +0.8
1,824,112 - DZA65_RS08615 0.67 -0.2
1,824,112 - DZA65_RS08615 0.67 -0.9
1,824,112 - DZA65_RS08615 0.67 -0.6
1,824,112 - DZA65_RS08615 0.67 -0.9
1,824,112 - DZA65_RS08615 0.67 +0.4
1,824,112 - DZA65_RS08615 0.67 -0.9
1,824,112 - DZA65_RS08615 0.67 +0.7
1,824,112 - DZA65_RS08615 0.67 +0.3
1,824,112 - DZA65_RS08615 0.67 -1.0

Or see this region's nucleotide sequence