Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS08340 and DZA65_RS08345 are separated by 3 nucleotides DZA65_RS08345 and DZA65_RS08350 overlap by 4 nucleotides
DZA65_RS08340: DZA65_RS08340 - thioredoxin, at 1,757,269 to 1,759,062
_RS08340
DZA65_RS08345: DZA65_RS08345 - ABC transporter ATP-binding protein, at 1,759,066 to 1,759,887
_RS08345
DZA65_RS08350: DZA65_RS08350 - ABC transporter permease subunit, at 1,759,884 to 1,761,488
_RS08350
Position (kb)
1759
1760 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1758.177 kb on + strand, within DZA65_RS08340 at 1758.178 kb on - strand, within DZA65_RS08340 at 1758.178 kb on - strand, within DZA65_RS08340 at 1758.266 kb on + strand, within DZA65_RS08340 at 1758.267 kb on - strand, within DZA65_RS08340 at 1758.267 kb on - strand, within DZA65_RS08340 at 1758.348 kb on + strand, within DZA65_RS08340 at 1758.348 kb on + strand, within DZA65_RS08340 at 1758.348 kb on + strand, within DZA65_RS08340 at 1758.348 kb on + strand, within DZA65_RS08340 at 1758.348 kb on + strand, within DZA65_RS08340 at 1758.348 kb on + strand, within DZA65_RS08340 at 1758.348 kb on + strand, within DZA65_RS08340 at 1758.348 kb on + strand, within DZA65_RS08340 at 1758.349 kb on - strand, within DZA65_RS08340 at 1758.463 kb on - strand, within DZA65_RS08340 at 1758.476 kb on + strand, within DZA65_RS08340 at 1758.476 kb on + strand, within DZA65_RS08340 at 1758.476 kb on + strand, within DZA65_RS08340 at 1758.476 kb on + strand, within DZA65_RS08340 at 1758.477 kb on - strand, within DZA65_RS08340 at 1758.477 kb on - strand, within DZA65_RS08340 at 1758.573 kb on + strand, within DZA65_RS08340 at 1758.573 kb on + strand, within DZA65_RS08340 at 1758.574 kb on - strand, within DZA65_RS08340 at 1758.619 kb on + strand, within DZA65_RS08340 at 1758.619 kb on + strand, within DZA65_RS08340 at 1758.619 kb on + strand, within DZA65_RS08340 at 1758.619 kb on + strand, within DZA65_RS08340 at 1758.619 kb on + strand, within DZA65_RS08340 at 1758.620 kb on - strand, within DZA65_RS08340 at 1758.620 kb on - strand, within DZA65_RS08340 at 1758.620 kb on - strand, within DZA65_RS08340 at 1758.620 kb on - strand, within DZA65_RS08340 at 1758.645 kb on + strand, within DZA65_RS08340 at 1758.646 kb on - strand, within DZA65_RS08340 at 1758.646 kb on - strand, within DZA65_RS08340 at 1758.646 kb on - strand, within DZA65_RS08340 at 1758.683 kb on + strand, within DZA65_RS08340 at 1758.684 kb on - strand, within DZA65_RS08340 at 1758.713 kb on + strand, within DZA65_RS08340 at 1758.714 kb on - strand, within DZA65_RS08340 at 1758.841 kb on - strand, within DZA65_RS08340 at 1758.846 kb on - strand, within DZA65_RS08340 at 1758.879 kb on + strand, within DZA65_RS08340 at 1758.879 kb on + strand, within DZA65_RS08340 at 1758.879 kb on + strand, within DZA65_RS08340 at 1758.880 kb on - strand, within DZA65_RS08340 at 1758.880 kb on - strand, within DZA65_RS08340 at 1758.880 kb on - strand, within DZA65_RS08340 at 1758.880 kb on - strand, within DZA65_RS08340 at 1758.880 kb on - strand, within DZA65_RS08340 at 1758.880 kb on - strand, within DZA65_RS08340 at 1758.880 kb on - strand, within DZA65_RS08340 at 1758.880 kb on - strand, within DZA65_RS08340 at 1758.880 kb on - strand, within DZA65_RS08340 at 1758.880 kb on - strand, within DZA65_RS08340 at 1758.881 kb on + strand, within DZA65_RS08340 at 1758.881 kb on + strand, within DZA65_RS08340 at 1758.881 kb on + strand, within DZA65_RS08340 at 1758.882 kb on - strand, within DZA65_RS08340 at 1758.882 kb on - strand, within DZA65_RS08340 at 1758.882 kb on - strand, within DZA65_RS08340 at 1758.882 kb on - strand, within DZA65_RS08340 at 1758.951 kb on + strand at 1758.952 kb on - strand at 1759.022 kb on + strand at 1759.022 kb on + strand at 1759.023 kb on - strand at 1759.044 kb on - strand at 1759.067 kb on + strand at 1759.067 kb on + strand at 1759.076 kb on + strand at 1759.077 kb on - strand at 1759.077 kb on - strand at 1759.077 kb on - strand at 1759.077 kb on - strand at 1759.086 kb on + strand at 1759.087 kb on - strand at 1759.087 kb on - strand at 1759.095 kb on + strand at 1759.095 kb on + strand at 1759.095 kb on + strand at 1759.095 kb on + strand at 1759.095 kb on + strand at 1759.095 kb on + strand at 1759.095 kb on + strand at 1759.096 kb on - strand at 1759.096 kb on - strand at 1759.096 kb on - strand at 1759.096 kb on - strand at 1759.249 kb on + strand, within DZA65_RS08345 at 1759.250 kb on - strand, within DZA65_RS08345 at 1759.271 kb on + strand, within DZA65_RS08345 at 1759.271 kb on + strand, within DZA65_RS08345 at 1759.272 kb on - strand, within DZA65_RS08345 at 1759.779 kb on - strand, within DZA65_RS08345 at 1759.888 kb on - strand at 1759.888 kb on - strand at 1760.004 kb on - strand at 1760.065 kb on + strand, within DZA65_RS08350 at 1760.065 kb on + strand, within DZA65_RS08350 at 1760.065 kb on + strand, within DZA65_RS08350 at 1760.066 kb on - strand, within DZA65_RS08350 at 1760.095 kb on + strand, within DZA65_RS08350 at 1760.095 kb on + strand, within DZA65_RS08350 at 1760.095 kb on + strand, within DZA65_RS08350 at 1760.095 kb on + strand, within DZA65_RS08350 at 1760.095 kb on + strand, within DZA65_RS08350 at 1760.095 kb on + strand, within DZA65_RS08350 at 1760.095 kb on + strand, within DZA65_RS08350 at 1760.096 kb on - strand, within DZA65_RS08350 at 1760.096 kb on - strand, within DZA65_RS08350 at 1760.096 kb on - strand, within DZA65_RS08350 at 1760.096 kb on - strand, within DZA65_RS08350 at 1760.096 kb on - strand, within DZA65_RS08350 at 1760.154 kb on + strand, within DZA65_RS08350 at 1760.155 kb on - strand, within DZA65_RS08350 at 1760.318 kb on + strand, within DZA65_RS08350 at 1760.318 kb on + strand, within DZA65_RS08350 at 1760.375 kb on + strand, within DZA65_RS08350 at 1760.375 kb on + strand, within DZA65_RS08350 at 1760.375 kb on + strand at 1760.376 kb on - strand, within DZA65_RS08350 at 1760.376 kb on - strand, within DZA65_RS08350 at 1760.376 kb on - strand, within DZA65_RS08350 at 1760.376 kb on - strand, within DZA65_RS08350 at 1760.522 kb on + strand, within DZA65_RS08350 at 1760.607 kb on + strand, within DZA65_RS08350 at 1760.607 kb on + strand, within DZA65_RS08350 at 1760.607 kb on + strand, within DZA65_RS08350 at 1760.607 kb on + strand, within DZA65_RS08350 at 1760.608 kb on - strand, within DZA65_RS08350 at 1760.608 kb on - strand, within DZA65_RS08350 at 1760.608 kb on - strand, within DZA65_RS08350 at 1760.781 kb on + strand, within DZA65_RS08350 at 1760.781 kb on + strand, within DZA65_RS08350 at 1760.781 kb on + strand, within DZA65_RS08350 at 1760.782 kb on - strand, within DZA65_RS08350 at 1760.782 kb on - strand, within DZA65_RS08350 at 1760.782 kb on - strand, within DZA65_RS08350 at 1760.796 kb on + strand, within DZA65_RS08350
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,758,177 + DZA65_RS08340 0.51 -1.2 1,758,178 - DZA65_RS08340 0.51 -0.6 1,758,178 - DZA65_RS08340 0.51 -0.9 1,758,266 + DZA65_RS08340 0.56 -1.2 1,758,267 - DZA65_RS08340 0.56 -1.2 1,758,267 - DZA65_RS08340 0.56 +0.0 1,758,348 + DZA65_RS08340 0.60 -1.7 1,758,348 + DZA65_RS08340 0.60 +0.1 1,758,348 + DZA65_RS08340 0.60 -0.8 1,758,348 + DZA65_RS08340 0.60 -1.7 1,758,348 + DZA65_RS08340 0.60 +0.1 1,758,348 + DZA65_RS08340 0.60 +2.2 1,758,348 + DZA65_RS08340 0.60 -0.9 1,758,348 + DZA65_RS08340 0.60 +0.8 1,758,349 - DZA65_RS08340 0.60 -2.2 1,758,463 - DZA65_RS08340 0.67 -1.8 1,758,476 + DZA65_RS08340 0.67 -0.2 1,758,476 + DZA65_RS08340 0.67 -2.2 1,758,476 + DZA65_RS08340 0.67 -1.0 1,758,476 + DZA65_RS08340 0.67 -0.6 1,758,477 - DZA65_RS08340 0.67 -0.0 1,758,477 - DZA65_RS08340 0.67 -2.4 1,758,573 + DZA65_RS08340 0.73 -0.8 1,758,573 + DZA65_RS08340 0.73 -1.5 1,758,574 - DZA65_RS08340 0.73 -0.2 1,758,619 + DZA65_RS08340 0.75 +0.4 1,758,619 + DZA65_RS08340 0.75 -0.4 1,758,619 + DZA65_RS08340 0.75 +1.8 1,758,619 + DZA65_RS08340 0.75 +1.0 1,758,619 + DZA65_RS08340 0.75 +0.4 1,758,620 - DZA65_RS08340 0.75 +0.8 1,758,620 - DZA65_RS08340 0.75 +2.0 1,758,620 - DZA65_RS08340 0.75 -0.2 1,758,620 - DZA65_RS08340 0.75 +1.4 1,758,645 + DZA65_RS08340 0.77 -2.3 1,758,646 - DZA65_RS08340 0.77 -0.2 1,758,646 - DZA65_RS08340 0.77 +0.4 1,758,646 - DZA65_RS08340 0.77 -2.0 1,758,683 + DZA65_RS08340 0.79 -0.9 1,758,684 - DZA65_RS08340 0.79 -1.4 1,758,713 + DZA65_RS08340 0.80 +0.1 1,758,714 - DZA65_RS08340 0.81 -1.6 1,758,841 - DZA65_RS08340 0.88 -1.4 1,758,846 - DZA65_RS08340 0.88 +2.0 1,758,879 + DZA65_RS08340 0.90 -0.6 1,758,879 + DZA65_RS08340 0.90 -1.2 1,758,879 + DZA65_RS08340 0.90 -0.9 1,758,880 - DZA65_RS08340 0.90 +0.4 1,758,880 - DZA65_RS08340 0.90 -0.4 1,758,880 - DZA65_RS08340 0.90 -1.9 1,758,880 - DZA65_RS08340 0.90 +0.4 1,758,880 - DZA65_RS08340 0.90 -1.7 1,758,880 - DZA65_RS08340 0.90 -1.4 1,758,880 - DZA65_RS08340 0.90 -0.3 1,758,880 - DZA65_RS08340 0.90 -1.4 1,758,880 - DZA65_RS08340 0.90 +0.1 1,758,880 - DZA65_RS08340 0.90 -1.1 1,758,881 + DZA65_RS08340 0.90 +0.7 1,758,881 + DZA65_RS08340 0.90 -1.0 1,758,881 + DZA65_RS08340 0.90 -1.7 1,758,882 - DZA65_RS08340 0.90 -0.6 1,758,882 - DZA65_RS08340 0.90 -0.6 1,758,882 - DZA65_RS08340 0.90 -0.9 1,758,882 - DZA65_RS08340 0.90 -0.7 1,758,951 + -0.8 1,758,952 - +0.1 1,759,022 + +0.4 1,759,022 + +0.6 1,759,023 - +0.1 1,759,044 - -0.6 1,759,067 + +0.7 1,759,067 + -2.6 1,759,076 + -2.0 1,759,077 - +1.0 1,759,077 - +0.1 1,759,077 - +1.4 1,759,077 - +0.2 1,759,086 + -1.6 1,759,087 - +1.3 1,759,087 - +0.6 1,759,095 + -1.3 1,759,095 + +0.1 1,759,095 + -1.6 1,759,095 + -0.7 1,759,095 + -0.4 1,759,095 + +1.4 1,759,095 + -1.4 1,759,096 - +0.6 1,759,096 - -0.6 1,759,096 - -0.6 1,759,096 - -0.2 1,759,249 + DZA65_RS08345 0.22 -1.3 1,759,250 - DZA65_RS08345 0.22 +0.1 1,759,271 + DZA65_RS08345 0.25 -1.0 1,759,271 + DZA65_RS08345 0.25 -1.0 1,759,272 - DZA65_RS08345 0.25 -0.9 1,759,779 - DZA65_RS08345 0.87 -2.5 1,759,888 - -0.7 1,759,888 - -0.6 1,760,004 - -0.3 1,760,065 + DZA65_RS08350 0.11 +0.4 1,760,065 + DZA65_RS08350 0.11 +0.1 1,760,065 + DZA65_RS08350 0.11 -0.7 1,760,066 - DZA65_RS08350 0.11 +0.4 1,760,095 + DZA65_RS08350 0.13 -1.4 1,760,095 + DZA65_RS08350 0.13 -0.2 1,760,095 + DZA65_RS08350 0.13 -1.1 1,760,095 + DZA65_RS08350 0.13 +0.8 1,760,095 + DZA65_RS08350 0.13 +0.1 1,760,095 + DZA65_RS08350 0.13 -1.6 1,760,095 + DZA65_RS08350 0.13 -0.4 1,760,096 - DZA65_RS08350 0.13 -0.4 1,760,096 - DZA65_RS08350 0.13 +0.1 1,760,096 - DZA65_RS08350 0.13 -0.2 1,760,096 - DZA65_RS08350 0.13 -1.2 1,760,096 - DZA65_RS08350 0.13 +0.0 1,760,154 + DZA65_RS08350 0.17 -1.9 1,760,155 - DZA65_RS08350 0.17 -1.0 1,760,318 + DZA65_RS08350 0.27 +0.4 1,760,318 + DZA65_RS08350 0.27 -0.6 1,760,375 + DZA65_RS08350 0.31 -1.7 1,760,375 + DZA65_RS08350 0.31 -0.4 1,760,375 + +1.0 1,760,376 - DZA65_RS08350 0.31 -0.0 1,760,376 - DZA65_RS08350 0.31 -1.4 1,760,376 - DZA65_RS08350 0.31 +0.1 1,760,376 - DZA65_RS08350 0.31 +1.0 1,760,522 + DZA65_RS08350 0.40 +0.3 1,760,607 + DZA65_RS08350 0.45 -0.2 1,760,607 + DZA65_RS08350 0.45 -1.6 1,760,607 + DZA65_RS08350 0.45 +0.1 1,760,607 + DZA65_RS08350 0.45 -1.1 1,760,608 - DZA65_RS08350 0.45 +0.6 1,760,608 - DZA65_RS08350 0.45 +0.5 1,760,608 - DZA65_RS08350 0.45 +0.4 1,760,781 + DZA65_RS08350 0.56 -1.4 1,760,781 + DZA65_RS08350 0.56 +0.7 1,760,781 + DZA65_RS08350 0.56 +0.5 1,760,782 - DZA65_RS08350 0.56 +0.0 1,760,782 - DZA65_RS08350 0.56 +0.4 1,760,782 - DZA65_RS08350 0.56 -0.6 1,760,796 + DZA65_RS08350 0.57 -0.2
Or see this region's nucleotide sequence