Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS08285

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS08280 and DZA65_RS08285 are separated by 484 nucleotidesDZA65_RS08285 and DZA65_RS08290 are separated by 97 nucleotides DZA65_RS08280: DZA65_RS08280 - energy transducer TonB, at 1,742,213 to 1,743,052 _RS08280 DZA65_RS08285: DZA65_RS08285 - ABC transporter substrate-binding protein, at 1,743,537 to 1,744,544 _RS08285 DZA65_RS08290: DZA65_RS08290 - TonB-dependent receptor, at 1,744,642 to 1,746,963 _RS08290 Position (kb) 1743 1744 1745Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1742.542 kb on + strand, within DZA65_RS08280at 1742.542 kb on + strand, within DZA65_RS08280at 1742.542 kb on + strand, within DZA65_RS08280at 1742.542 kb on + strand, within DZA65_RS08280at 1742.542 kb on + strand, within DZA65_RS08280at 1742.542 kb on + strand, within DZA65_RS08280at 1742.542 kb on + strand, within DZA65_RS08280at 1742.542 kb on + strand, within DZA65_RS08280at 1742.542 kb on + strand, within DZA65_RS08280at 1742.543 kb on - strand, within DZA65_RS08280at 1742.543 kb on - strand, within DZA65_RS08280at 1742.543 kb on - strand, within DZA65_RS08280at 1742.543 kb on - strand, within DZA65_RS08280at 1742.543 kb on - strand, within DZA65_RS08280at 1742.543 kb on - strand, within DZA65_RS08280at 1742.545 kb on + strand, within DZA65_RS08280at 1742.545 kb on + strand, within DZA65_RS08280at 1742.545 kb on + strand, within DZA65_RS08280at 1742.545 kb on + strand, within DZA65_RS08280at 1742.545 kb on + strand, within DZA65_RS08280at 1742.545 kb on + strand, within DZA65_RS08280at 1742.545 kb on + strand, within DZA65_RS08280at 1742.545 kb on + strand, within DZA65_RS08280at 1742.545 kb on + strand, within DZA65_RS08280at 1742.546 kb on - strand, within DZA65_RS08280at 1742.546 kb on - strand, within DZA65_RS08280at 1742.546 kb on - strand, within DZA65_RS08280at 1742.546 kb on - strand, within DZA65_RS08280at 1742.606 kb on - strand, within DZA65_RS08280at 1742.743 kb on + strand, within DZA65_RS08280at 1742.745 kb on + strand, within DZA65_RS08280at 1742.746 kb on - strand, within DZA65_RS08280at 1742.751 kb on - strand, within DZA65_RS08280at 1742.751 kb on - strand, within DZA65_RS08280at 1743.036 kb on + strandat 1743.036 kb on + strandat 1743.036 kb on + strandat 1743.072 kb on - strandat 1743.112 kb on + strandat 1743.112 kb on + strandat 1743.113 kb on - strandat 1743.151 kb on + strandat 1743.151 kb on + strandat 1743.152 kb on - strandat 1743.152 kb on - strandat 1743.152 kb on - strandat 1743.152 kb on - strandat 1743.208 kb on - strandat 1743.208 kb on - strandat 1743.240 kb on + strandat 1743.364 kb on + strandat 1743.430 kb on - strandat 1743.477 kb on + strandat 1743.478 kb on - strandat 1743.480 kb on + strandat 1743.536 kb on + strandat 1743.537 kb on - strandat 1743.583 kb on + strandat 1743.635 kb on + strandat 1743.762 kb on - strand, within DZA65_RS08285at 1743.762 kb on - strand, within DZA65_RS08285at 1743.785 kb on + strand, within DZA65_RS08285at 1743.811 kb on + strand, within DZA65_RS08285at 1743.811 kb on + strand, within DZA65_RS08285at 1743.811 kb on + strand, within DZA65_RS08285at 1743.811 kb on + strand, within DZA65_RS08285at 1743.812 kb on - strand, within DZA65_RS08285at 1743.812 kb on - strand, within DZA65_RS08285at 1743.812 kb on - strand, within DZA65_RS08285at 1743.812 kb on - strand, within DZA65_RS08285at 1743.812 kb on - strand, within DZA65_RS08285at 1743.822 kb on + strand, within DZA65_RS08285at 1743.822 kb on + strand, within DZA65_RS08285at 1743.822 kb on + strand, within DZA65_RS08285at 1743.822 kb on + strand, within DZA65_RS08285at 1743.822 kb on + strand, within DZA65_RS08285at 1743.822 kb on + strand, within DZA65_RS08285at 1743.823 kb on - strand, within DZA65_RS08285at 1743.843 kb on - strand, within DZA65_RS08285at 1743.909 kb on + strand, within DZA65_RS08285at 1743.909 kb on + strand, within DZA65_RS08285at 1743.955 kb on + strand, within DZA65_RS08285at 1743.955 kb on + strand, within DZA65_RS08285at 1743.956 kb on - strand, within DZA65_RS08285at 1743.956 kb on - strand, within DZA65_RS08285at 1743.956 kb on - strand, within DZA65_RS08285at 1743.956 kb on - strand, within DZA65_RS08285at 1744.266 kb on - strand, within DZA65_RS08285at 1744.268 kb on + strand, within DZA65_RS08285at 1744.269 kb on - strand, within DZA65_RS08285at 1744.269 kb on - strand, within DZA65_RS08285at 1744.269 kb on - strand, within DZA65_RS08285at 1744.276 kb on + strand, within DZA65_RS08285at 1744.326 kb on + strand, within DZA65_RS08285at 1744.326 kb on + strand, within DZA65_RS08285at 1744.326 kb on + strand, within DZA65_RS08285at 1744.326 kb on + strandat 1744.326 kb on + strand, within DZA65_RS08285at 1744.326 kb on + strand, within DZA65_RS08285at 1744.326 kb on + strand, within DZA65_RS08285at 1744.326 kb on + strand, within DZA65_RS08285at 1744.326 kb on + strand, within DZA65_RS08285at 1744.326 kb on + strand, within DZA65_RS08285at 1744.327 kb on - strand, within DZA65_RS08285at 1744.327 kb on - strand, within DZA65_RS08285at 1744.327 kb on - strand, within DZA65_RS08285at 1744.327 kb on - strand, within DZA65_RS08285at 1744.327 kb on - strand, within DZA65_RS08285at 1744.327 kb on - strand, within DZA65_RS08285at 1744.328 kb on + strand, within DZA65_RS08285at 1744.402 kb on + strand, within DZA65_RS08285at 1744.411 kb on + strand, within DZA65_RS08285at 1744.411 kb on + strand, within DZA65_RS08285at 1744.411 kb on + strand, within DZA65_RS08285at 1744.411 kb on + strand, within DZA65_RS08285at 1744.412 kb on - strand, within DZA65_RS08285at 1744.474 kb on - strandat 1744.620 kb on + strandat 1745.089 kb on + strand, within DZA65_RS08290at 1745.089 kb on + strand, within DZA65_RS08290at 1745.090 kb on - strand, within DZA65_RS08290at 1745.090 kb on - strand, within DZA65_RS08290at 1745.131 kb on - strand, within DZA65_RS08290at 1745.173 kb on + strand, within DZA65_RS08290at 1745.174 kb on - strand, within DZA65_RS08290at 1745.273 kb on - strand, within DZA65_RS08290at 1745.273 kb on - strand, within DZA65_RS08290at 1745.359 kb on + strand, within DZA65_RS08290at 1745.365 kb on + strand, within DZA65_RS08290at 1745.366 kb on - strand, within DZA65_RS08290at 1745.366 kb on - strand, within DZA65_RS08290at 1745.431 kb on + strand, within DZA65_RS08290at 1745.460 kb on + strand, within DZA65_RS08290at 1745.460 kb on + strand, within DZA65_RS08290at 1745.474 kb on - strand, within DZA65_RS08290at 1745.474 kb on - strand, within DZA65_RS08290at 1745.474 kb on - strand, within DZA65_RS08290

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,742,542 + DZA65_RS08280 0.39 -0.6
1,742,542 + DZA65_RS08280 0.39 +1.1
1,742,542 + DZA65_RS08280 0.39 +0.4
1,742,542 + DZA65_RS08280 0.39 +0.4
1,742,542 + DZA65_RS08280 0.39 -0.7
1,742,542 + DZA65_RS08280 0.39 -0.6
1,742,542 + DZA65_RS08280 0.39 -0.3
1,742,542 + DZA65_RS08280 0.39 -0.2
1,742,542 + DZA65_RS08280 0.39 -0.6
1,742,543 - DZA65_RS08280 0.39 +0.3
1,742,543 - DZA65_RS08280 0.39 +0.1
1,742,543 - DZA65_RS08280 0.39 +0.6
1,742,543 - DZA65_RS08280 0.39 -0.3
1,742,543 - DZA65_RS08280 0.39 +2.0
1,742,543 - DZA65_RS08280 0.39 -0.4
1,742,545 + DZA65_RS08280 0.40 -0.6
1,742,545 + DZA65_RS08280 0.40 +0.4
1,742,545 + DZA65_RS08280 0.40 +2.0
1,742,545 + DZA65_RS08280 0.40 -0.7
1,742,545 + DZA65_RS08280 0.40 +0.2
1,742,545 + DZA65_RS08280 0.40 -1.2
1,742,545 + DZA65_RS08280 0.40 -2.3
1,742,545 + DZA65_RS08280 0.40 +0.2
1,742,545 + DZA65_RS08280 0.40 -1.2
1,742,546 - DZA65_RS08280 0.40 -1.2
1,742,546 - DZA65_RS08280 0.40 +0.2
1,742,546 - DZA65_RS08280 0.40 -1.2
1,742,546 - DZA65_RS08280 0.40 -0.8
1,742,606 - DZA65_RS08280 0.47 -0.9
1,742,743 + DZA65_RS08280 0.63 -0.9
1,742,745 + DZA65_RS08280 0.63 -1.8
1,742,746 - DZA65_RS08280 0.63 -1.2
1,742,751 - DZA65_RS08280 0.64 -0.7
1,742,751 - DZA65_RS08280 0.64 +1.2
1,743,036 + -0.3
1,743,036 + -0.0
1,743,036 + -1.3
1,743,072 - -0.2
1,743,112 + -0.6
1,743,112 + +0.1
1,743,113 - -3.1
1,743,151 + +0.1
1,743,151 + -0.5
1,743,152 - -1.2
1,743,152 - -1.6
1,743,152 - -0.2
1,743,152 - -1.4
1,743,208 - -0.3
1,743,208 - -0.5
1,743,240 + +0.1
1,743,364 + -0.3
1,743,430 - -0.6
1,743,477 + -1.2
1,743,478 - +0.4
1,743,480 + -0.7
1,743,536 + -1.2
1,743,537 - +0.9
1,743,583 + +0.0
1,743,635 + +0.2
1,743,762 - DZA65_RS08285 0.22 +0.3
1,743,762 - DZA65_RS08285 0.22 -0.4
1,743,785 + DZA65_RS08285 0.25 -0.4
1,743,811 + DZA65_RS08285 0.27 -1.6
1,743,811 + DZA65_RS08285 0.27 -0.9
1,743,811 + DZA65_RS08285 0.27 +0.6
1,743,811 + DZA65_RS08285 0.27 +0.2
1,743,812 - DZA65_RS08285 0.27 -0.6
1,743,812 - DZA65_RS08285 0.27 +1.0
1,743,812 - DZA65_RS08285 0.27 -0.9
1,743,812 - DZA65_RS08285 0.27 -0.4
1,743,812 - DZA65_RS08285 0.27 +0.6
1,743,822 + DZA65_RS08285 0.28 -0.2
1,743,822 + DZA65_RS08285 0.28 +0.0
1,743,822 + DZA65_RS08285 0.28 -0.4
1,743,822 + DZA65_RS08285 0.28 +0.1
1,743,822 + DZA65_RS08285 0.28 +0.9
1,743,822 + DZA65_RS08285 0.28 -1.6
1,743,823 - DZA65_RS08285 0.28 +1.1
1,743,843 - DZA65_RS08285 0.30 -0.9
1,743,909 + DZA65_RS08285 0.37 +0.4
1,743,909 + DZA65_RS08285 0.37 -1.2
1,743,955 + DZA65_RS08285 0.41 +0.3
1,743,955 + DZA65_RS08285 0.41 +1.4
1,743,956 - DZA65_RS08285 0.42 -0.7
1,743,956 - DZA65_RS08285 0.42 +1.4
1,743,956 - DZA65_RS08285 0.42 -0.6
1,743,956 - DZA65_RS08285 0.42 +0.8
1,744,266 - DZA65_RS08285 0.72 -0.7
1,744,268 + DZA65_RS08285 0.73 -1.4
1,744,269 - DZA65_RS08285 0.73 +0.1
1,744,269 - DZA65_RS08285 0.73 -1.6
1,744,269 - DZA65_RS08285 0.73 +1.1
1,744,276 + DZA65_RS08285 0.73 +0.2
1,744,326 + DZA65_RS08285 0.78 -1.9
1,744,326 + DZA65_RS08285 0.78 -1.2
1,744,326 + DZA65_RS08285 0.78 -0.2
1,744,326 + +0.4
1,744,326 + DZA65_RS08285 0.78 -0.2
1,744,326 + DZA65_RS08285 0.78 +0.8
1,744,326 + DZA65_RS08285 0.78 -0.6
1,744,326 + DZA65_RS08285 0.78 -0.5
1,744,326 + DZA65_RS08285 0.78 +0.8
1,744,326 + DZA65_RS08285 0.78 -1.4
1,744,327 - DZA65_RS08285 0.78 -0.6
1,744,327 - DZA65_RS08285 0.78 +0.8
1,744,327 - DZA65_RS08285 0.78 +0.7
1,744,327 - DZA65_RS08285 0.78 +0.6
1,744,327 - DZA65_RS08285 0.78 +1.0
1,744,327 - DZA65_RS08285 0.78 -2.4
1,744,328 + DZA65_RS08285 0.78 +0.1
1,744,402 + DZA65_RS08285 0.86 +0.4
1,744,411 + DZA65_RS08285 0.87 +1.4
1,744,411 + DZA65_RS08285 0.87 -0.3
1,744,411 + DZA65_RS08285 0.87 +1.8
1,744,411 + DZA65_RS08285 0.87 -1.6
1,744,412 - DZA65_RS08285 0.87 -0.4
1,744,474 - +0.1
1,744,620 + -0.4
1,745,089 + DZA65_RS08290 0.19 -0.4
1,745,089 + DZA65_RS08290 0.19 -1.0
1,745,090 - DZA65_RS08290 0.19 -0.6
1,745,090 - DZA65_RS08290 0.19 +0.1
1,745,131 - DZA65_RS08290 0.21 +0.6
1,745,173 + DZA65_RS08290 0.23 -1.4
1,745,174 - DZA65_RS08290 0.23 -0.2
1,745,273 - DZA65_RS08290 0.27 -1.0
1,745,273 - DZA65_RS08290 0.27 -0.3
1,745,359 + DZA65_RS08290 0.31 -1.0
1,745,365 + DZA65_RS08290 0.31 +0.4
1,745,366 - DZA65_RS08290 0.31 +0.6
1,745,366 - DZA65_RS08290 0.31 -0.6
1,745,431 + DZA65_RS08290 0.34 -0.4
1,745,460 + DZA65_RS08290 0.35 -0.1
1,745,460 + DZA65_RS08290 0.35 -0.6
1,745,474 - DZA65_RS08290 0.36 -1.4
1,745,474 - DZA65_RS08290 0.36 -2.0
1,745,474 - DZA65_RS08290 0.36 -1.3

Or see this region's nucleotide sequence