Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS07915

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS07910 and DZA65_RS07915 overlap by 1 nucleotidesDZA65_RS07915 and DZA65_RS07920 are separated by 87 nucleotides DZA65_RS07910: DZA65_RS07910 - D-cysteine desulfhydrase, at 1,651,059 to 1,652,072 _RS07910 DZA65_RS07915: DZA65_RS07915 - aspartate/glutamate racemase family protein, at 1,652,072 to 1,652,800 _RS07915 DZA65_RS07920: DZA65_RS07920 - anaerobic C4-dicarboxylate transporter, at 1,652,888 to 1,654,228 _RS07920 Position (kb) 1652 1653Strain fitness (log2 ratio) -2 -1 0 1 2at 1651.138 kb on - strandat 1651.138 kb on - strandat 1651.158 kb on + strandat 1651.158 kb on + strandat 1651.159 kb on - strandat 1651.159 kb on - strandat 1651.160 kb on + strandat 1651.161 kb on - strand, within DZA65_RS07910at 1651.161 kb on - strand, within DZA65_RS07910at 1651.262 kb on + strand, within DZA65_RS07910at 1651.263 kb on - strand, within DZA65_RS07910at 1651.263 kb on - strand, within DZA65_RS07910at 1651.263 kb on - strand, within DZA65_RS07910at 1651.265 kb on + strand, within DZA65_RS07910at 1651.266 kb on - strand, within DZA65_RS07910at 1651.266 kb on - strand, within DZA65_RS07910at 1651.266 kb on - strand, within DZA65_RS07910at 1651.266 kb on - strand, within DZA65_RS07910at 1651.342 kb on + strand, within DZA65_RS07910at 1651.342 kb on + strand, within DZA65_RS07910at 1651.342 kb on + strand, within DZA65_RS07910at 1651.343 kb on - strand, within DZA65_RS07910at 1651.343 kb on - strand, within DZA65_RS07910at 1651.369 kb on - strand, within DZA65_RS07910at 1651.380 kb on + strand, within DZA65_RS07910at 1651.515 kb on + strand, within DZA65_RS07910at 1651.515 kb on + strand, within DZA65_RS07910at 1651.515 kb on + strand, within DZA65_RS07910at 1651.515 kb on + strand, within DZA65_RS07910at 1651.515 kb on + strand, within DZA65_RS07910at 1651.515 kb on + strand, within DZA65_RS07910at 1651.515 kb on + strand, within DZA65_RS07910at 1651.516 kb on - strand, within DZA65_RS07910at 1651.516 kb on - strand, within DZA65_RS07910at 1651.516 kb on - strand, within DZA65_RS07910at 1651.516 kb on - strand, within DZA65_RS07910at 1651.516 kb on - strand, within DZA65_RS07910at 1651.516 kb on - strand, within DZA65_RS07910at 1651.587 kb on + strand, within DZA65_RS07910at 1651.588 kb on + strand, within DZA65_RS07910at 1651.588 kb on - strand, within DZA65_RS07910at 1651.588 kb on - strand, within DZA65_RS07910at 1651.588 kb on - strand, within DZA65_RS07910at 1651.588 kb on - strand, within DZA65_RS07910at 1651.622 kb on + strand, within DZA65_RS07910at 1651.627 kb on + strand, within DZA65_RS07910at 1651.628 kb on - strand, within DZA65_RS07910at 1651.628 kb on - strand, within DZA65_RS07910at 1651.718 kb on - strand, within DZA65_RS07910at 1651.834 kb on - strand, within DZA65_RS07910at 1651.834 kb on - strand, within DZA65_RS07910at 1651.834 kb on - strand, within DZA65_RS07910at 1651.834 kb on - strand, within DZA65_RS07910at 1651.834 kb on - strand, within DZA65_RS07910at 1651.848 kb on + strand, within DZA65_RS07910at 1651.926 kb on + strand, within DZA65_RS07910at 1651.927 kb on - strand, within DZA65_RS07910at 1651.927 kb on - strand, within DZA65_RS07910at 1651.963 kb on + strand, within DZA65_RS07910at 1652.070 kb on + strandat 1652.071 kb on - strandat 1652.071 kb on - strandat 1652.190 kb on + strand, within DZA65_RS07915at 1652.191 kb on - strand, within DZA65_RS07915at 1652.323 kb on + strand, within DZA65_RS07915at 1652.324 kb on - strand, within DZA65_RS07915at 1652.405 kb on - strand, within DZA65_RS07915at 1652.422 kb on + strand, within DZA65_RS07915at 1652.423 kb on - strand, within DZA65_RS07915at 1652.423 kb on - strand, within DZA65_RS07915at 1652.743 kb on + strandat 1652.846 kb on + strandat 1652.847 kb on - strandat 1652.884 kb on + strandat 1652.892 kb on + strandat 1652.893 kb on - strandat 1652.893 kb on - strandat 1652.895 kb on + strandat 1652.896 kb on - strandat 1652.896 kb on - strandat 1652.901 kb on + strandat 1652.901 kb on + strandat 1652.902 kb on - strandat 1652.902 kb on - strandat 1652.902 kb on - strandat 1652.902 kb on - strandat 1652.902 kb on - strandat 1652.902 kb on - strandat 1652.927 kb on + strandat 1652.928 kb on - strandat 1653.058 kb on + strand, within DZA65_RS07920at 1653.058 kb on + strand, within DZA65_RS07920at 1653.058 kb on + strand, within DZA65_RS07920at 1653.059 kb on - strand, within DZA65_RS07920at 1653.059 kb on - strand, within DZA65_RS07920at 1653.059 kb on - strand, within DZA65_RS07920at 1653.059 kb on - strand, within DZA65_RS07920at 1653.060 kb on + strand, within DZA65_RS07920at 1653.060 kb on + strand, within DZA65_RS07920at 1653.060 kb on + strand, within DZA65_RS07920at 1653.060 kb on + strand, within DZA65_RS07920at 1653.060 kb on + strand, within DZA65_RS07920at 1653.060 kb on + strand, within DZA65_RS07920at 1653.060 kb on + strand, within DZA65_RS07920at 1653.060 kb on + strand, within DZA65_RS07920at 1653.060 kb on + strand, within DZA65_RS07920at 1653.060 kb on + strand, within DZA65_RS07920at 1653.060 kb on + strand, within DZA65_RS07920at 1653.061 kb on - strand, within DZA65_RS07920at 1653.061 kb on - strand, within DZA65_RS07920at 1653.061 kb on - strand, within DZA65_RS07920at 1653.061 kb on - strand, within DZA65_RS07920at 1653.061 kb on - strand, within DZA65_RS07920at 1653.063 kb on + strand, within DZA65_RS07920at 1653.063 kb on + strand, within DZA65_RS07920at 1653.069 kb on + strand, within DZA65_RS07920at 1653.069 kb on + strand, within DZA65_RS07920at 1653.070 kb on - strand, within DZA65_RS07920at 1653.070 kb on - strand, within DZA65_RS07920at 1653.070 kb on - strand, within DZA65_RS07920at 1653.096 kb on + strand, within DZA65_RS07920at 1653.113 kb on + strand, within DZA65_RS07920at 1653.294 kb on + strand, within DZA65_RS07920at 1653.295 kb on - strand, within DZA65_RS07920at 1653.576 kb on + strand, within DZA65_RS07920at 1653.576 kb on + strand, within DZA65_RS07920at 1653.577 kb on - strand, within DZA65_RS07920at 1653.577 kb on - strandat 1653.577 kb on - strand, within DZA65_RS07920at 1653.638 kb on - strand, within DZA65_RS07920at 1653.707 kb on + strand, within DZA65_RS07920

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,651,138 - -0.9
1,651,138 - -1.1
1,651,158 + +0.2
1,651,158 + +0.8
1,651,159 - -2.1
1,651,159 - -0.5
1,651,160 + +0.3
1,651,161 - DZA65_RS07910 0.10 -0.9
1,651,161 - DZA65_RS07910 0.10 -0.7
1,651,262 + DZA65_RS07910 0.20 -1.7
1,651,263 - DZA65_RS07910 0.20 -0.1
1,651,263 - DZA65_RS07910 0.20 -1.5
1,651,263 - DZA65_RS07910 0.20 -0.1
1,651,265 + DZA65_RS07910 0.20 +1.9
1,651,266 - DZA65_RS07910 0.20 -0.5
1,651,266 - DZA65_RS07910 0.20 +0.3
1,651,266 - DZA65_RS07910 0.20 -1.2
1,651,266 - DZA65_RS07910 0.20 +0.6
1,651,342 + DZA65_RS07910 0.28 +0.5
1,651,342 + DZA65_RS07910 0.28 -0.1
1,651,342 + DZA65_RS07910 0.28 -1.7
1,651,343 - DZA65_RS07910 0.28 +0.3
1,651,343 - DZA65_RS07910 0.28 -0.3
1,651,369 - DZA65_RS07910 0.31 -1.9
1,651,380 + DZA65_RS07910 0.32 +0.2
1,651,515 + DZA65_RS07910 0.45 +0.9
1,651,515 + DZA65_RS07910 0.45 -1.1
1,651,515 + DZA65_RS07910 0.45 -1.0
1,651,515 + DZA65_RS07910 0.45 -1.0
1,651,515 + DZA65_RS07910 0.45 +0.1
1,651,515 + DZA65_RS07910 0.45 -0.9
1,651,515 + DZA65_RS07910 0.45 -0.7
1,651,516 - DZA65_RS07910 0.45 -0.1
1,651,516 - DZA65_RS07910 0.45 -1.5
1,651,516 - DZA65_RS07910 0.45 +1.5
1,651,516 - DZA65_RS07910 0.45 -0.1
1,651,516 - DZA65_RS07910 0.45 -1.6
1,651,516 - DZA65_RS07910 0.45 -0.9
1,651,587 + DZA65_RS07910 0.52 +0.5
1,651,588 + DZA65_RS07910 0.52 -2.4
1,651,588 - DZA65_RS07910 0.52 -0.3
1,651,588 - DZA65_RS07910 0.52 -0.7
1,651,588 - DZA65_RS07910 0.52 -1.0
1,651,588 - DZA65_RS07910 0.52 -0.1
1,651,622 + DZA65_RS07910 0.56 +0.0
1,651,627 + DZA65_RS07910 0.56 -1.5
1,651,628 - DZA65_RS07910 0.56 +0.2
1,651,628 - DZA65_RS07910 0.56 -0.3
1,651,718 - DZA65_RS07910 0.65 -2.1
1,651,834 - DZA65_RS07910 0.76 -1.9
1,651,834 - DZA65_RS07910 0.76 -1.3
1,651,834 - DZA65_RS07910 0.76 +0.5
1,651,834 - DZA65_RS07910 0.76 +0.8
1,651,834 - DZA65_RS07910 0.76 +0.7
1,651,848 + DZA65_RS07910 0.78 -0.0
1,651,926 + DZA65_RS07910 0.86 +1.3
1,651,927 - DZA65_RS07910 0.86 -0.1
1,651,927 - DZA65_RS07910 0.86 -1.0
1,651,963 + DZA65_RS07910 0.89 +0.8
1,652,070 + +0.1
1,652,071 - +0.9
1,652,071 - +0.3
1,652,190 + DZA65_RS07915 0.16 -1.0
1,652,191 - DZA65_RS07915 0.16 +1.0
1,652,323 + DZA65_RS07915 0.34 -0.7
1,652,324 - DZA65_RS07915 0.35 -0.3
1,652,405 - DZA65_RS07915 0.46 +0.7
1,652,422 + DZA65_RS07915 0.48 -1.1
1,652,423 - DZA65_RS07915 0.48 -0.3
1,652,423 - DZA65_RS07915 0.48 -0.0
1,652,743 + -0.6
1,652,846 + -0.9
1,652,847 - -0.1
1,652,884 + -0.4
1,652,892 + -0.5
1,652,893 - -0.1
1,652,893 - -0.4
1,652,895 + -0.0
1,652,896 - -0.5
1,652,896 - -0.9
1,652,901 + -0.5
1,652,901 + -0.9
1,652,902 - +0.2
1,652,902 - +0.9
1,652,902 - -0.5
1,652,902 - +0.5
1,652,902 - -1.8
1,652,902 - -0.5
1,652,927 + -0.9
1,652,928 - -1.9
1,653,058 + DZA65_RS07920 0.13 -0.5
1,653,058 + DZA65_RS07920 0.13 +1.0
1,653,058 + DZA65_RS07920 0.13 -0.9
1,653,059 - DZA65_RS07920 0.13 +0.6
1,653,059 - DZA65_RS07920 0.13 -1.3
1,653,059 - DZA65_RS07920 0.13 -1.4
1,653,059 - DZA65_RS07920 0.13 +1.0
1,653,060 + DZA65_RS07920 0.13 -0.4
1,653,060 + DZA65_RS07920 0.13 -0.1
1,653,060 + DZA65_RS07920 0.13 -0.2
1,653,060 + DZA65_RS07920 0.13 -0.1
1,653,060 + DZA65_RS07920 0.13 +1.5
1,653,060 + DZA65_RS07920 0.13 +0.5
1,653,060 + DZA65_RS07920 0.13 -1.5
1,653,060 + DZA65_RS07920 0.13 +0.5
1,653,060 + DZA65_RS07920 0.13 -0.3
1,653,060 + DZA65_RS07920 0.13 -0.2
1,653,060 + DZA65_RS07920 0.13 -0.2
1,653,061 - DZA65_RS07920 0.13 -2.1
1,653,061 - DZA65_RS07920 0.13 -1.7
1,653,061 - DZA65_RS07920 0.13 -1.1
1,653,061 - DZA65_RS07920 0.13 +1.2
1,653,061 - DZA65_RS07920 0.13 +0.3
1,653,063 + DZA65_RS07920 0.13 +0.0
1,653,063 + DZA65_RS07920 0.13 +0.5
1,653,069 + DZA65_RS07920 0.13 -1.5
1,653,069 + DZA65_RS07920 0.13 -0.6
1,653,070 - DZA65_RS07920 0.14 +0.2
1,653,070 - DZA65_RS07920 0.14 +2.0
1,653,070 - DZA65_RS07920 0.14 +0.7
1,653,096 + DZA65_RS07920 0.16 -0.5
1,653,113 + DZA65_RS07920 0.17 -0.5
1,653,294 + DZA65_RS07920 0.30 -0.9
1,653,295 - DZA65_RS07920 0.30 +0.0
1,653,576 + DZA65_RS07920 0.51 -0.3
1,653,576 + DZA65_RS07920 0.51 -0.9
1,653,577 - DZA65_RS07920 0.51 -0.5
1,653,577 - -1.1
1,653,577 - DZA65_RS07920 0.51 -1.2
1,653,638 - DZA65_RS07920 0.56 -1.2
1,653,707 + DZA65_RS07920 0.61 -0.3

Or see this region's nucleotide sequence