Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS07840

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS07835 and DZA65_RS07840 are separated by 4 nucleotidesDZA65_RS07840 and DZA65_RS07845 are separated by 9 nucleotides DZA65_RS07835: DZA65_RS07835 - hydrogenase 4 subunit F, at 1,633,300 to 1,634,949 _RS07835 DZA65_RS07840: DZA65_RS07840 - hydrogenase 4 membrane subunit, at 1,634,954 to 1,635,604 _RS07840 DZA65_RS07845: DZA65_RS07845 - hydrogenase 4 subunit D, at 1,635,614 to 1,637,053 _RS07845 Position (kb) 1634 1635 1636Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1634.003 kb on + strand, within DZA65_RS07835at 1634.136 kb on - strand, within DZA65_RS07835at 1634.163 kb on + strand, within DZA65_RS07835at 1634.163 kb on + strand, within DZA65_RS07835at 1634.164 kb on - strand, within DZA65_RS07835at 1634.164 kb on - strand, within DZA65_RS07835at 1634.164 kb on - strand, within DZA65_RS07835at 1634.164 kb on - strand, within DZA65_RS07835at 1634.164 kb on - strand, within DZA65_RS07835at 1634.164 kb on - strand, within DZA65_RS07835at 1634.278 kb on - strand, within DZA65_RS07835at 1634.278 kb on - strand, within DZA65_RS07835at 1634.278 kb on - strand, within DZA65_RS07835at 1634.408 kb on + strand, within DZA65_RS07835at 1634.447 kb on + strand, within DZA65_RS07835at 1634.447 kb on + strand, within DZA65_RS07835at 1634.447 kb on + strand, within DZA65_RS07835at 1634.447 kb on + strand, within DZA65_RS07835at 1634.447 kb on + strand, within DZA65_RS07835at 1634.447 kb on + strand, within DZA65_RS07835at 1634.447 kb on + strand, within DZA65_RS07835at 1634.447 kb on + strand, within DZA65_RS07835at 1634.447 kb on + strand, within DZA65_RS07835at 1634.447 kb on + strand, within DZA65_RS07835at 1634.447 kb on + strand, within DZA65_RS07835at 1634.447 kb on + strand, within DZA65_RS07835at 1634.448 kb on - strand, within DZA65_RS07835at 1634.448 kb on - strand, within DZA65_RS07835at 1634.448 kb on - strand, within DZA65_RS07835at 1634.448 kb on - strand, within DZA65_RS07835at 1634.448 kb on - strand, within DZA65_RS07835at 1634.448 kb on - strand, within DZA65_RS07835at 1634.448 kb on - strand, within DZA65_RS07835at 1634.448 kb on - strand, within DZA65_RS07835at 1634.448 kb on - strand, within DZA65_RS07835at 1634.448 kb on - strand, within DZA65_RS07835at 1634.448 kb on - strandat 1634.448 kb on - strand, within DZA65_RS07835at 1634.448 kb on - strand, within DZA65_RS07835at 1634.483 kb on + strand, within DZA65_RS07835at 1634.484 kb on - strand, within DZA65_RS07835at 1634.484 kb on - strand, within DZA65_RS07835at 1634.606 kb on + strand, within DZA65_RS07835at 1634.607 kb on - strand, within DZA65_RS07835at 1634.629 kb on + strand, within DZA65_RS07835at 1634.629 kb on + strand, within DZA65_RS07835at 1634.630 kb on - strand, within DZA65_RS07835at 1634.630 kb on - strand, within DZA65_RS07835at 1634.630 kb on - strand, within DZA65_RS07835at 1634.660 kb on + strand, within DZA65_RS07835at 1634.660 kb on + strand, within DZA65_RS07835at 1634.660 kb on + strand, within DZA65_RS07835at 1634.661 kb on - strand, within DZA65_RS07835at 1634.661 kb on - strand, within DZA65_RS07835at 1634.661 kb on - strand, within DZA65_RS07835at 1634.661 kb on - strand, within DZA65_RS07835at 1634.661 kb on - strand, within DZA65_RS07835at 1634.661 kb on - strand, within DZA65_RS07835at 1634.672 kb on + strand, within DZA65_RS07835at 1634.672 kb on + strand, within DZA65_RS07835at 1634.777 kb on + strand, within DZA65_RS07835at 1634.777 kb on + strand, within DZA65_RS07835at 1634.777 kb on + strand, within DZA65_RS07835at 1635.194 kb on + strand, within DZA65_RS07840at 1635.194 kb on + strand, within DZA65_RS07840at 1635.195 kb on - strand, within DZA65_RS07840at 1635.195 kb on - strand, within DZA65_RS07840at 1635.195 kb on - strand, within DZA65_RS07840at 1635.276 kb on + strand, within DZA65_RS07840at 1635.276 kb on + strand, within DZA65_RS07840at 1635.276 kb on + strand, within DZA65_RS07840at 1635.276 kb on + strand, within DZA65_RS07840at 1635.276 kb on + strand, within DZA65_RS07840at 1635.277 kb on - strand, within DZA65_RS07840at 1635.309 kb on - strand, within DZA65_RS07840at 1635.432 kb on + strand, within DZA65_RS07840at 1635.432 kb on + strand, within DZA65_RS07840at 1635.433 kb on - strand, within DZA65_RS07840at 1635.504 kb on + strand, within DZA65_RS07840at 1635.560 kb on + strandat 1635.560 kb on + strandat 1635.560 kb on + strandat 1635.561 kb on - strandat 1635.561 kb on - strandat 1635.561 kb on - strandat 1635.580 kb on + strandat 1635.580 kb on + strandat 1635.581 kb on - strandat 1635.581 kb on - strandat 1635.615 kb on + strandat 1635.615 kb on + strandat 1635.615 kb on + strandat 1635.615 kb on + strandat 1635.615 kb on + strandat 1635.616 kb on - strandat 1635.616 kb on - strandat 1635.616 kb on - strandat 1635.662 kb on + strandat 1635.662 kb on + strandat 1635.663 kb on - strandat 1635.760 kb on - strand, within DZA65_RS07845at 1635.999 kb on + strand, within DZA65_RS07845at 1635.999 kb on + strand, within DZA65_RS07845at 1635.999 kb on + strand, within DZA65_RS07845at 1635.999 kb on + strandat 1635.999 kb on + strand, within DZA65_RS07845at 1636.000 kb on - strand, within DZA65_RS07845at 1636.000 kb on - strand, within DZA65_RS07845at 1636.000 kb on - strand, within DZA65_RS07845at 1636.000 kb on - strand, within DZA65_RS07845at 1636.041 kb on + strand, within DZA65_RS07845at 1636.042 kb on - strand, within DZA65_RS07845at 1636.059 kb on + strand, within DZA65_RS07845at 1636.059 kb on + strand, within DZA65_RS07845at 1636.059 kb on + strand, within DZA65_RS07845at 1636.059 kb on + strand, within DZA65_RS07845at 1636.059 kb on + strand, within DZA65_RS07845at 1636.060 kb on - strand, within DZA65_RS07845at 1636.060 kb on - strand, within DZA65_RS07845at 1636.060 kb on - strand, within DZA65_RS07845at 1636.060 kb on - strand, within DZA65_RS07845at 1636.060 kb on - strand, within DZA65_RS07845at 1636.060 kb on - strand, within DZA65_RS07845at 1636.060 kb on - strand, within DZA65_RS07845at 1636.060 kb on - strand, within DZA65_RS07845at 1636.060 kb on - strand, within DZA65_RS07845at 1636.060 kb on - strand, within DZA65_RS07845at 1636.060 kb on - strand, within DZA65_RS07845at 1636.125 kb on + strand, within DZA65_RS07845at 1636.125 kb on + strand, within DZA65_RS07845at 1636.125 kb on + strand, within DZA65_RS07845at 1636.125 kb on + strand, within DZA65_RS07845at 1636.125 kb on + strand, within DZA65_RS07845at 1636.125 kb on + strand, within DZA65_RS07845at 1636.125 kb on + strand, within DZA65_RS07845at 1636.125 kb on + strand, within DZA65_RS07845at 1636.125 kb on + strand, within DZA65_RS07845at 1636.126 kb on - strand, within DZA65_RS07845at 1636.126 kb on - strand, within DZA65_RS07845at 1636.126 kb on - strand, within DZA65_RS07845at 1636.126 kb on - strand, within DZA65_RS07845at 1636.126 kb on - strand, within DZA65_RS07845at 1636.126 kb on - strand, within DZA65_RS07845at 1636.126 kb on - strand, within DZA65_RS07845at 1636.126 kb on - strand, within DZA65_RS07845at 1636.126 kb on - strand, within DZA65_RS07845at 1636.126 kb on - strand, within DZA65_RS07845at 1636.149 kb on + strand, within DZA65_RS07845at 1636.149 kb on + strand, within DZA65_RS07845at 1636.150 kb on - strand, within DZA65_RS07845at 1636.150 kb on - strand, within DZA65_RS07845at 1636.168 kb on + strand, within DZA65_RS07845at 1636.168 kb on + strand, within DZA65_RS07845at 1636.168 kb on + strand, within DZA65_RS07845at 1636.169 kb on - strand, within DZA65_RS07845at 1636.185 kb on + strand, within DZA65_RS07845at 1636.186 kb on - strand, within DZA65_RS07845at 1636.186 kb on - strand, within DZA65_RS07845at 1636.186 kb on - strand, within DZA65_RS07845at 1636.186 kb on - strand, within DZA65_RS07845at 1636.186 kb on - strandat 1636.186 kb on - strand, within DZA65_RS07845at 1636.200 kb on + strand, within DZA65_RS07845at 1636.201 kb on - strand, within DZA65_RS07845at 1636.210 kb on + strand, within DZA65_RS07845at 1636.210 kb on + strand, within DZA65_RS07845at 1636.211 kb on - strand, within DZA65_RS07845at 1636.288 kb on + strand, within DZA65_RS07845at 1636.289 kb on - strand, within DZA65_RS07845at 1636.289 kb on - strand, within DZA65_RS07845at 1636.291 kb on - strand, within DZA65_RS07845at 1636.515 kb on + strand, within DZA65_RS07845at 1636.515 kb on + strand, within DZA65_RS07845at 1636.515 kb on + strand, within DZA65_RS07845at 1636.516 kb on - strand, within DZA65_RS07845at 1636.587 kb on + strand, within DZA65_RS07845at 1636.587 kb on + strand, within DZA65_RS07845at 1636.588 kb on - strand, within DZA65_RS07845at 1636.590 kb on + strand, within DZA65_RS07845

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,634,003 + DZA65_RS07835 0.43 +1.0
1,634,136 - DZA65_RS07835 0.51 -0.5
1,634,163 + DZA65_RS07835 0.52 -1.1
1,634,163 + DZA65_RS07835 0.52 -1.5
1,634,164 - DZA65_RS07835 0.52 -1.1
1,634,164 - DZA65_RS07835 0.52 -1.2
1,634,164 - DZA65_RS07835 0.52 +0.0
1,634,164 - DZA65_RS07835 0.52 -1.2
1,634,164 - DZA65_RS07835 0.52 -0.0
1,634,164 - DZA65_RS07835 0.52 -0.4
1,634,278 - DZA65_RS07835 0.59 -0.4
1,634,278 - DZA65_RS07835 0.59 -0.9
1,634,278 - DZA65_RS07835 0.59 -0.5
1,634,408 + DZA65_RS07835 0.67 -0.3
1,634,447 + DZA65_RS07835 0.70 -0.6
1,634,447 + DZA65_RS07835 0.70 +0.9
1,634,447 + DZA65_RS07835 0.70 +0.1
1,634,447 + DZA65_RS07835 0.70 -0.1
1,634,447 + DZA65_RS07835 0.70 -0.7
1,634,447 + DZA65_RS07835 0.70 -0.3
1,634,447 + DZA65_RS07835 0.70 -1.1
1,634,447 + DZA65_RS07835 0.70 -1.7
1,634,447 + DZA65_RS07835 0.70 -0.9
1,634,447 + DZA65_RS07835 0.70 +0.4
1,634,447 + DZA65_RS07835 0.70 +0.9
1,634,447 + DZA65_RS07835 0.70 +0.0
1,634,448 - DZA65_RS07835 0.70 +1.5
1,634,448 - DZA65_RS07835 0.70 -0.5
1,634,448 - DZA65_RS07835 0.70 +0.2
1,634,448 - DZA65_RS07835 0.70 +0.1
1,634,448 - DZA65_RS07835 0.70 -0.1
1,634,448 - DZA65_RS07835 0.70 -0.1
1,634,448 - DZA65_RS07835 0.70 -0.5
1,634,448 - DZA65_RS07835 0.70 +0.9
1,634,448 - DZA65_RS07835 0.70 +1.9
1,634,448 - DZA65_RS07835 0.70 -1.4
1,634,448 - +0.7
1,634,448 - DZA65_RS07835 0.70 -1.3
1,634,448 - DZA65_RS07835 0.70 +0.2
1,634,483 + DZA65_RS07835 0.72 -0.7
1,634,484 - DZA65_RS07835 0.72 -1.1
1,634,484 - DZA65_RS07835 0.72 +0.5
1,634,606 + DZA65_RS07835 0.79 -2.0
1,634,607 - DZA65_RS07835 0.79 -0.1
1,634,629 + DZA65_RS07835 0.81 +0.8
1,634,629 + DZA65_RS07835 0.81 -0.9
1,634,630 - DZA65_RS07835 0.81 -0.9
1,634,630 - DZA65_RS07835 0.81 -0.4
1,634,630 - DZA65_RS07835 0.81 -0.5
1,634,660 + DZA65_RS07835 0.82 +0.2
1,634,660 + DZA65_RS07835 0.82 +0.2
1,634,660 + DZA65_RS07835 0.82 +0.5
1,634,661 - DZA65_RS07835 0.82 -2.8
1,634,661 - DZA65_RS07835 0.82 -0.9
1,634,661 - DZA65_RS07835 0.82 -0.5
1,634,661 - DZA65_RS07835 0.82 -0.4
1,634,661 - DZA65_RS07835 0.82 +0.0
1,634,661 - DZA65_RS07835 0.82 -0.4
1,634,672 + DZA65_RS07835 0.83 +0.1
1,634,672 + DZA65_RS07835 0.83 +0.1
1,634,777 + DZA65_RS07835 0.90 -2.2
1,634,777 + DZA65_RS07835 0.90 -0.1
1,634,777 + DZA65_RS07835 0.90 -0.1
1,635,194 + DZA65_RS07840 0.37 -0.9
1,635,194 + DZA65_RS07840 0.37 -1.6
1,635,195 - DZA65_RS07840 0.37 -1.1
1,635,195 - DZA65_RS07840 0.37 -1.5
1,635,195 - DZA65_RS07840 0.37 -0.4
1,635,276 + DZA65_RS07840 0.49 -1.5
1,635,276 + DZA65_RS07840 0.49 +0.7
1,635,276 + DZA65_RS07840 0.49 +0.0
1,635,276 + DZA65_RS07840 0.49 +0.6
1,635,276 + DZA65_RS07840 0.49 -2.2
1,635,277 - DZA65_RS07840 0.50 -1.3
1,635,309 - DZA65_RS07840 0.55 -1.3
1,635,432 + DZA65_RS07840 0.73 -0.3
1,635,432 + DZA65_RS07840 0.73 -0.5
1,635,433 - DZA65_RS07840 0.74 -0.3
1,635,504 + DZA65_RS07840 0.84 +0.9
1,635,560 + +0.1
1,635,560 + -0.8
1,635,560 + -0.1
1,635,561 - +0.6
1,635,561 - +0.5
1,635,561 - +0.6
1,635,580 + -0.1
1,635,580 + -1.8
1,635,581 - -0.2
1,635,581 - -0.5
1,635,615 + -2.2
1,635,615 + -0.4
1,635,615 + -0.6
1,635,615 + +0.5
1,635,615 + +0.1
1,635,616 - -0.7
1,635,616 - +1.2
1,635,616 - -0.5
1,635,662 + +0.7
1,635,662 + +1.0
1,635,663 - -0.3
1,635,760 - DZA65_RS07845 0.10 -0.3
1,635,999 + DZA65_RS07845 0.27 +0.1
1,635,999 + DZA65_RS07845 0.27 +0.5
1,635,999 + DZA65_RS07845 0.27 -1.0
1,635,999 + -0.1
1,635,999 + DZA65_RS07845 0.27 -0.1
1,636,000 - DZA65_RS07845 0.27 +0.5
1,636,000 - DZA65_RS07845 0.27 -0.9
1,636,000 - DZA65_RS07845 0.27 -0.1
1,636,000 - DZA65_RS07845 0.27 -0.1
1,636,041 + DZA65_RS07845 0.30 -0.3
1,636,042 - DZA65_RS07845 0.30 +0.2
1,636,059 + DZA65_RS07845 0.31 -1.0
1,636,059 + DZA65_RS07845 0.31 +0.3
1,636,059 + DZA65_RS07845 0.31 +0.1
1,636,059 + DZA65_RS07845 0.31 +0.5
1,636,059 + DZA65_RS07845 0.31 +0.5
1,636,060 - DZA65_RS07845 0.31 +0.9
1,636,060 - DZA65_RS07845 0.31 -0.2
1,636,060 - DZA65_RS07845 0.31 -2.2
1,636,060 - DZA65_RS07845 0.31 +1.2
1,636,060 - DZA65_RS07845 0.31 -1.3
1,636,060 - DZA65_RS07845 0.31 -0.9
1,636,060 - DZA65_RS07845 0.31 +1.0
1,636,060 - DZA65_RS07845 0.31 -1.3
1,636,060 - DZA65_RS07845 0.31 -0.0
1,636,060 - DZA65_RS07845 0.31 -0.4
1,636,060 - DZA65_RS07845 0.31 -0.9
1,636,125 + DZA65_RS07845 0.35 -0.1
1,636,125 + DZA65_RS07845 0.35 -1.5
1,636,125 + DZA65_RS07845 0.35 +0.2
1,636,125 + DZA65_RS07845 0.35 -0.4
1,636,125 + DZA65_RS07845 0.35 +0.5
1,636,125 + DZA65_RS07845 0.35 -0.5
1,636,125 + DZA65_RS07845 0.35 -0.9
1,636,125 + DZA65_RS07845 0.35 +1.5
1,636,125 + DZA65_RS07845 0.35 +1.5
1,636,126 - DZA65_RS07845 0.36 -0.1
1,636,126 - DZA65_RS07845 0.36 -0.9
1,636,126 - DZA65_RS07845 0.36 -1.9
1,636,126 - DZA65_RS07845 0.36 -0.5
1,636,126 - DZA65_RS07845 0.36 +0.1
1,636,126 - DZA65_RS07845 0.36 -1.0
1,636,126 - DZA65_RS07845 0.36 -0.3
1,636,126 - DZA65_RS07845 0.36 -1.2
1,636,126 - DZA65_RS07845 0.36 -0.7
1,636,126 - DZA65_RS07845 0.36 -0.9
1,636,149 + DZA65_RS07845 0.37 +0.5
1,636,149 + DZA65_RS07845 0.37 -0.9
1,636,150 - DZA65_RS07845 0.37 +0.0
1,636,150 - DZA65_RS07845 0.37 +0.3
1,636,168 + DZA65_RS07845 0.38 +0.8
1,636,168 + DZA65_RS07845 0.38 +0.5
1,636,168 + DZA65_RS07845 0.38 -0.9
1,636,169 - DZA65_RS07845 0.39 -0.7
1,636,185 + DZA65_RS07845 0.40 +0.5
1,636,186 - DZA65_RS07845 0.40 -0.1
1,636,186 - DZA65_RS07845 0.40 +0.4
1,636,186 - DZA65_RS07845 0.40 +0.1
1,636,186 - DZA65_RS07845 0.40 +0.9
1,636,186 - +2.5
1,636,186 - DZA65_RS07845 0.40 -0.5
1,636,200 + DZA65_RS07845 0.41 -1.1
1,636,201 - DZA65_RS07845 0.41 +0.2
1,636,210 + DZA65_RS07845 0.41 +2.2
1,636,210 + DZA65_RS07845 0.41 +0.7
1,636,211 - DZA65_RS07845 0.41 -1.2
1,636,288 + DZA65_RS07845 0.47 -0.9
1,636,289 - DZA65_RS07845 0.47 +0.5
1,636,289 - DZA65_RS07845 0.47 +1.2
1,636,291 - DZA65_RS07845 0.47 +0.7
1,636,515 + DZA65_RS07845 0.63 +0.7
1,636,515 + DZA65_RS07845 0.63 +0.3
1,636,515 + DZA65_RS07845 0.63 -0.2
1,636,516 - DZA65_RS07845 0.63 -0.9
1,636,587 + DZA65_RS07845 0.68 +0.1
1,636,587 + DZA65_RS07845 0.68 +0.7
1,636,588 - DZA65_RS07845 0.68 -0.3
1,636,590 + DZA65_RS07845 0.68 -0.5

Or see this region's nucleotide sequence