Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS07610

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS07600 and DZA65_RS07605 are separated by 57 nucleotidesDZA65_RS07605 and DZA65_RS07610 overlap by 1 nucleotidesDZA65_RS07610 and DZA65_RS07615 are separated by 220 nucleotides DZA65_RS07600: DZA65_RS07600 - P-type DNA transfer ATPase VirB11, at 1,583,785 to 1,584,788 _RS07600 DZA65_RS07605: DZA65_RS07605 - P-type conjugative transfer protein VirB9, at 1,584,846 to 1,585,739 _RS07605 DZA65_RS07610: DZA65_RS07610 - type IV secretion system protein, at 1,585,739 to 1,586,422 _RS07610 DZA65_RS07615: DZA65_RS07615 - type IV secretion system protein, at 1,586,643 to 1,587,671 _RS07615 Position (kb) 1585 1586 1587Strain fitness (log2 ratio) -2 -1 0 1 2at 1584.745 kb on - strandat 1585.117 kb on + strand, within DZA65_RS07605at 1585.166 kb on + strand, within DZA65_RS07605at 1585.166 kb on + strand, within DZA65_RS07605at 1585.166 kb on + strand, within DZA65_RS07605at 1585.167 kb on - strand, within DZA65_RS07605at 1585.167 kb on - strand, within DZA65_RS07605at 1585.167 kb on - strand, within DZA65_RS07605at 1585.167 kb on - strand, within DZA65_RS07605at 1585.167 kb on - strand, within DZA65_RS07605at 1585.167 kb on - strand, within DZA65_RS07605at 1585.168 kb on + strand, within DZA65_RS07605at 1585.168 kb on + strand, within DZA65_RS07605at 1585.168 kb on + strand, within DZA65_RS07605at 1585.168 kb on + strand, within DZA65_RS07605at 1585.168 kb on + strand, within DZA65_RS07605at 1585.168 kb on + strand, within DZA65_RS07605at 1585.168 kb on + strand, within DZA65_RS07605at 1585.168 kb on + strand, within DZA65_RS07605at 1585.169 kb on - strand, within DZA65_RS07605at 1585.169 kb on - strand, within DZA65_RS07605at 1585.169 kb on - strand, within DZA65_RS07605at 1585.169 kb on - strand, within DZA65_RS07605at 1585.349 kb on + strand, within DZA65_RS07605at 1585.363 kb on + strand, within DZA65_RS07605at 1585.363 kb on + strand, within DZA65_RS07605at 1585.364 kb on - strand, within DZA65_RS07605at 1585.630 kb on + strand, within DZA65_RS07605at 1585.630 kb on + strand, within DZA65_RS07605at 1585.630 kb on + strand, within DZA65_RS07605at 1585.630 kb on + strand, within DZA65_RS07605at 1585.631 kb on - strand, within DZA65_RS07605at 1585.631 kb on - strand, within DZA65_RS07605at 1585.631 kb on - strand, within DZA65_RS07605at 1585.631 kb on - strand, within DZA65_RS07605at 1585.644 kb on + strand, within DZA65_RS07605at 1585.645 kb on - strand, within DZA65_RS07605at 1585.674 kb on + strandat 1585.722 kb on + strandat 1585.722 kb on + strandat 1585.723 kb on - strandat 1585.723 kb on - strandat 1585.771 kb on - strandat 1585.839 kb on + strand, within DZA65_RS07610at 1585.845 kb on + strand, within DZA65_RS07610at 1585.845 kb on + strand, within DZA65_RS07610at 1585.846 kb on - strand, within DZA65_RS07610at 1585.846 kb on - strand, within DZA65_RS07610at 1585.846 kb on - strand, within DZA65_RS07610at 1585.867 kb on + strand, within DZA65_RS07610at 1585.904 kb on + strand, within DZA65_RS07610at 1585.905 kb on - strand, within DZA65_RS07610at 1585.912 kb on + strand, within DZA65_RS07610at 1585.912 kb on + strand, within DZA65_RS07610at 1585.913 kb on - strand, within DZA65_RS07610at 1585.913 kb on - strand, within DZA65_RS07610at 1585.919 kb on + strand, within DZA65_RS07610at 1585.919 kb on + strand, within DZA65_RS07610at 1585.932 kb on + strand, within DZA65_RS07610at 1585.932 kb on + strand, within DZA65_RS07610at 1585.933 kb on - strand, within DZA65_RS07610at 1585.989 kb on + strand, within DZA65_RS07610at 1585.990 kb on - strand, within DZA65_RS07610at 1585.990 kb on - strand, within DZA65_RS07610at 1585.999 kb on + strand, within DZA65_RS07610at 1586.046 kb on + strand, within DZA65_RS07610at 1586.046 kb on + strand, within DZA65_RS07610at 1586.047 kb on - strand, within DZA65_RS07610at 1586.091 kb on + strand, within DZA65_RS07610at 1586.112 kb on + strand, within DZA65_RS07610at 1586.112 kb on + strand, within DZA65_RS07610at 1586.112 kb on + strand, within DZA65_RS07610at 1586.112 kb on + strand, within DZA65_RS07610at 1586.112 kb on + strand, within DZA65_RS07610at 1586.113 kb on - strand, within DZA65_RS07610at 1586.113 kb on - strand, within DZA65_RS07610at 1586.113 kb on - strand, within DZA65_RS07610at 1586.113 kb on - strand, within DZA65_RS07610at 1586.113 kb on - strandat 1586.116 kb on + strand, within DZA65_RS07610at 1586.116 kb on + strand, within DZA65_RS07610at 1586.117 kb on - strand, within DZA65_RS07610at 1586.117 kb on - strand, within DZA65_RS07610at 1586.117 kb on - strand, within DZA65_RS07610at 1586.118 kb on + strand, within DZA65_RS07610at 1586.119 kb on - strand, within DZA65_RS07610at 1586.119 kb on - strand, within DZA65_RS07610at 1586.139 kb on + strand, within DZA65_RS07610at 1586.139 kb on + strand, within DZA65_RS07610at 1586.140 kb on - strand, within DZA65_RS07610at 1586.207 kb on - strand, within DZA65_RS07610at 1586.207 kb on - strand, within DZA65_RS07610at 1586.207 kb on - strand, within DZA65_RS07610at 1586.207 kb on - strand, within DZA65_RS07610at 1586.207 kb on - strand, within DZA65_RS07610at 1586.207 kb on - strand, within DZA65_RS07610at 1586.207 kb on - strand, within DZA65_RS07610at 1586.207 kb on - strand, within DZA65_RS07610at 1586.207 kb on - strand, within DZA65_RS07610at 1586.207 kb on - strand, within DZA65_RS07610at 1586.209 kb on - strand, within DZA65_RS07610at 1586.209 kb on - strand, within DZA65_RS07610at 1586.209 kb on - strand, within DZA65_RS07610at 1586.209 kb on - strand, within DZA65_RS07610at 1586.209 kb on - strand, within DZA65_RS07610at 1586.209 kb on - strand, within DZA65_RS07610at 1586.209 kb on - strand, within DZA65_RS07610at 1586.209 kb on - strand, within DZA65_RS07610at 1586.209 kb on - strand, within DZA65_RS07610at 1586.209 kb on - strand, within DZA65_RS07610at 1586.209 kb on - strand, within DZA65_RS07610at 1586.209 kb on - strand, within DZA65_RS07610at 1586.209 kb on - strand, within DZA65_RS07610at 1586.209 kb on - strand, within DZA65_RS07610at 1586.209 kb on - strand, within DZA65_RS07610at 1586.209 kb on - strand, within DZA65_RS07610at 1586.209 kb on - strand, within DZA65_RS07610at 1586.243 kb on + strand, within DZA65_RS07610at 1586.243 kb on + strand, within DZA65_RS07610at 1586.244 kb on - strand, within DZA65_RS07610at 1586.244 kb on - strand, within DZA65_RS07610at 1586.278 kb on + strand, within DZA65_RS07610at 1586.279 kb on - strand, within DZA65_RS07610at 1586.442 kb on - strandat 1586.577 kb on - strandat 1586.645 kb on - strandat 1586.675 kb on + strandat 1586.675 kb on + strandat 1586.676 kb on - strandat 1586.844 kb on + strand, within DZA65_RS07615at 1586.895 kb on + strand, within DZA65_RS07615at 1586.895 kb on + strand, within DZA65_RS07615at 1586.895 kb on + strand, within DZA65_RS07615at 1586.896 kb on - strand, within DZA65_RS07615at 1586.896 kb on - strand, within DZA65_RS07615at 1586.928 kb on - strandat 1586.975 kb on + strand, within DZA65_RS07615at 1586.976 kb on - strand, within DZA65_RS07615at 1586.982 kb on - strand, within DZA65_RS07615at 1587.002 kb on + strand, within DZA65_RS07615at 1587.011 kb on + strand, within DZA65_RS07615at 1587.020 kb on + strand, within DZA65_RS07615at 1587.020 kb on + strand, within DZA65_RS07615at 1587.021 kb on - strand, within DZA65_RS07615at 1587.032 kb on - strand, within DZA65_RS07615at 1587.032 kb on - strand, within DZA65_RS07615at 1587.035 kb on + strand, within DZA65_RS07615at 1587.036 kb on - strand, within DZA65_RS07615at 1587.036 kb on - strand, within DZA65_RS07615at 1587.036 kb on - strand, within DZA65_RS07615at 1587.054 kb on + strand, within DZA65_RS07615at 1587.074 kb on + strand, within DZA65_RS07615at 1587.075 kb on - strand, within DZA65_RS07615at 1587.133 kb on + strand, within DZA65_RS07615at 1587.134 kb on - strand, within DZA65_RS07615at 1587.177 kb on + strand, within DZA65_RS07615at 1587.177 kb on + strand, within DZA65_RS07615at 1587.177 kb on + strand, within DZA65_RS07615at 1587.178 kb on - strand, within DZA65_RS07615at 1587.178 kb on - strand, within DZA65_RS07615at 1587.178 kb on - strand, within DZA65_RS07615at 1587.233 kb on + strand, within DZA65_RS07615at 1587.234 kb on - strand, within DZA65_RS07615at 1587.279 kb on + strand, within DZA65_RS07615at 1587.279 kb on + strand, within DZA65_RS07615at 1587.279 kb on + strandat 1587.280 kb on - strand, within DZA65_RS07615at 1587.280 kb on - strand, within DZA65_RS07615at 1587.280 kb on - strand, within DZA65_RS07615at 1587.365 kb on + strand, within DZA65_RS07615

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,584,745 - -0.8
1,585,117 + DZA65_RS07605 0.30 -0.5
1,585,166 + DZA65_RS07605 0.36 +0.7
1,585,166 + DZA65_RS07605 0.36 -2.1
1,585,166 + DZA65_RS07605 0.36 +0.8
1,585,167 - DZA65_RS07605 0.36 -0.7
1,585,167 - DZA65_RS07605 0.36 +0.2
1,585,167 - DZA65_RS07605 0.36 -0.5
1,585,167 - DZA65_RS07605 0.36 +1.5
1,585,167 - DZA65_RS07605 0.36 -0.4
1,585,167 - DZA65_RS07605 0.36 -0.7
1,585,168 + DZA65_RS07605 0.36 +1.1
1,585,168 + DZA65_RS07605 0.36 +0.9
1,585,168 + DZA65_RS07605 0.36 -1.2
1,585,168 + DZA65_RS07605 0.36 +1.1
1,585,168 + DZA65_RS07605 0.36 -1.1
1,585,168 + DZA65_RS07605 0.36 -0.7
1,585,168 + DZA65_RS07605 0.36 +0.7
1,585,168 + DZA65_RS07605 0.36 -1.1
1,585,169 - DZA65_RS07605 0.36 -1.1
1,585,169 - DZA65_RS07605 0.36 +0.8
1,585,169 - DZA65_RS07605 0.36 -0.3
1,585,169 - DZA65_RS07605 0.36 -0.8
1,585,349 + DZA65_RS07605 0.56 +0.8
1,585,363 + DZA65_RS07605 0.58 +0.3
1,585,363 + DZA65_RS07605 0.58 -1.5
1,585,364 - DZA65_RS07605 0.58 +0.3
1,585,630 + DZA65_RS07605 0.88 -0.1
1,585,630 + DZA65_RS07605 0.88 +0.3
1,585,630 + DZA65_RS07605 0.88 -0.3
1,585,630 + DZA65_RS07605 0.88 -0.5
1,585,631 - DZA65_RS07605 0.88 -2.1
1,585,631 - DZA65_RS07605 0.88 -1.7
1,585,631 - DZA65_RS07605 0.88 -1.3
1,585,631 - DZA65_RS07605 0.88 -2.1
1,585,644 + DZA65_RS07605 0.89 -0.8
1,585,645 - DZA65_RS07605 0.89 +0.7
1,585,674 + -1.5
1,585,722 + -0.1
1,585,722 + -1.5
1,585,723 - +0.5
1,585,723 - +0.7
1,585,771 - -0.4
1,585,839 + DZA65_RS07610 0.15 -1.6
1,585,845 + DZA65_RS07610 0.15 -1.3
1,585,845 + DZA65_RS07610 0.15 +0.5
1,585,846 - DZA65_RS07610 0.16 -1.7
1,585,846 - DZA65_RS07610 0.16 -0.5
1,585,846 - DZA65_RS07610 0.16 +0.3
1,585,867 + DZA65_RS07610 0.19 -1.0
1,585,904 + DZA65_RS07610 0.24 +0.2
1,585,905 - DZA65_RS07610 0.24 -1.2
1,585,912 + DZA65_RS07610 0.25 +0.5
1,585,912 + DZA65_RS07610 0.25 -0.1
1,585,913 - DZA65_RS07610 0.25 -0.8
1,585,913 - DZA65_RS07610 0.25 -0.6
1,585,919 + DZA65_RS07610 0.26 -1.8
1,585,919 + DZA65_RS07610 0.26 -0.5
1,585,932 + DZA65_RS07610 0.28 -0.1
1,585,932 + DZA65_RS07610 0.28 -0.5
1,585,933 - DZA65_RS07610 0.28 -0.8
1,585,989 + DZA65_RS07610 0.37 -0.7
1,585,990 - DZA65_RS07610 0.37 -0.4
1,585,990 - DZA65_RS07610 0.37 -0.5
1,585,999 + DZA65_RS07610 0.38 -0.6
1,586,046 + DZA65_RS07610 0.45 +0.7
1,586,046 + DZA65_RS07610 0.45 -1.8
1,586,047 - DZA65_RS07610 0.45 -0.2
1,586,091 + DZA65_RS07610 0.51 -0.2
1,586,112 + DZA65_RS07610 0.55 -0.5
1,586,112 + DZA65_RS07610 0.55 -1.2
1,586,112 + DZA65_RS07610 0.55 -0.1
1,586,112 + DZA65_RS07610 0.55 -0.1
1,586,112 + DZA65_RS07610 0.55 +0.2
1,586,113 - DZA65_RS07610 0.55 -2.0
1,586,113 - DZA65_RS07610 0.55 -1.0
1,586,113 - DZA65_RS07610 0.55 -0.4
1,586,113 - DZA65_RS07610 0.55 -0.8
1,586,113 - +1.5
1,586,116 + DZA65_RS07610 0.55 -0.9
1,586,116 + DZA65_RS07610 0.55 -1.2
1,586,117 - DZA65_RS07610 0.55 -0.6
1,586,117 - DZA65_RS07610 0.55 -0.4
1,586,117 - DZA65_RS07610 0.55 -0.9
1,586,118 + DZA65_RS07610 0.55 -1.1
1,586,119 - DZA65_RS07610 0.56 -0.1
1,586,119 - DZA65_RS07610 0.56 -1.1
1,586,139 + DZA65_RS07610 0.58 -1.1
1,586,139 + DZA65_RS07610 0.58 +0.5
1,586,140 - DZA65_RS07610 0.59 -0.7
1,586,207 - DZA65_RS07610 0.68 -0.6
1,586,207 - DZA65_RS07610 0.68 +0.5
1,586,207 - DZA65_RS07610 0.68 +1.3
1,586,207 - DZA65_RS07610 0.68 -0.8
1,586,207 - DZA65_RS07610 0.68 +0.1
1,586,207 - DZA65_RS07610 0.68 -0.1
1,586,207 - DZA65_RS07610 0.68 -0.5
1,586,207 - DZA65_RS07610 0.68 -0.1
1,586,207 - DZA65_RS07610 0.68 -1.3
1,586,207 - DZA65_RS07610 0.68 +0.4
1,586,209 - DZA65_RS07610 0.69 -0.1
1,586,209 - DZA65_RS07610 0.69 -0.7
1,586,209 - DZA65_RS07610 0.69 +0.6
1,586,209 - DZA65_RS07610 0.69 -1.8
1,586,209 - DZA65_RS07610 0.69 -0.5
1,586,209 - DZA65_RS07610 0.69 -0.7
1,586,209 - DZA65_RS07610 0.69 +1.0
1,586,209 - DZA65_RS07610 0.69 -0.2
1,586,209 - DZA65_RS07610 0.69 -1.0
1,586,209 - DZA65_RS07610 0.69 +0.0
1,586,209 - DZA65_RS07610 0.69 -0.3
1,586,209 - DZA65_RS07610 0.69 +0.8
1,586,209 - DZA65_RS07610 0.69 -0.3
1,586,209 - DZA65_RS07610 0.69 -1.5
1,586,209 - DZA65_RS07610 0.69 -1.5
1,586,209 - DZA65_RS07610 0.69 -0.1
1,586,209 - DZA65_RS07610 0.69 -0.4
1,586,243 + DZA65_RS07610 0.74 +0.1
1,586,243 + DZA65_RS07610 0.74 -0.7
1,586,244 - DZA65_RS07610 0.74 -0.3
1,586,244 - DZA65_RS07610 0.74 -1.8
1,586,278 + DZA65_RS07610 0.79 -0.3
1,586,279 - DZA65_RS07610 0.79 -0.5
1,586,442 - -0.3
1,586,577 - -1.7
1,586,645 - +0.9
1,586,675 + -0.5
1,586,675 + -0.5
1,586,676 - -1.0
1,586,844 + DZA65_RS07615 0.20 -0.3
1,586,895 + DZA65_RS07615 0.24 -0.4
1,586,895 + DZA65_RS07615 0.24 -1.1
1,586,895 + DZA65_RS07615 0.24 +0.0
1,586,896 - DZA65_RS07615 0.25 -1.1
1,586,896 - DZA65_RS07615 0.25 -0.7
1,586,928 - -0.5
1,586,975 + DZA65_RS07615 0.32 -1.0
1,586,976 - DZA65_RS07615 0.32 -0.8
1,586,982 - DZA65_RS07615 0.33 -0.8
1,587,002 + DZA65_RS07615 0.35 -2.7
1,587,011 + DZA65_RS07615 0.36 -0.4
1,587,020 + DZA65_RS07615 0.37 -0.7
1,587,020 + DZA65_RS07615 0.37 +0.9
1,587,021 - DZA65_RS07615 0.37 -0.3
1,587,032 - DZA65_RS07615 0.38 -1.1
1,587,032 - DZA65_RS07615 0.38 +0.2
1,587,035 + DZA65_RS07615 0.38 -0.1
1,587,036 - DZA65_RS07615 0.38 -2.0
1,587,036 - DZA65_RS07615 0.38 -0.1
1,587,036 - DZA65_RS07615 0.38 -2.0
1,587,054 + DZA65_RS07615 0.40 -0.7
1,587,074 + DZA65_RS07615 0.42 +2.7
1,587,075 - DZA65_RS07615 0.42 -0.7
1,587,133 + DZA65_RS07615 0.48 -0.7
1,587,134 - DZA65_RS07615 0.48 +0.7
1,587,177 + DZA65_RS07615 0.52 -1.7
1,587,177 + DZA65_RS07615 0.52 -0.8
1,587,177 + DZA65_RS07615 0.52 -0.1
1,587,178 - DZA65_RS07615 0.52 -1.0
1,587,178 - DZA65_RS07615 0.52 -0.7
1,587,178 - DZA65_RS07615 0.52 -1.1
1,587,233 + DZA65_RS07615 0.57 -0.1
1,587,234 - DZA65_RS07615 0.57 +0.8
1,587,279 + DZA65_RS07615 0.62 -2.2
1,587,279 + DZA65_RS07615 0.62 -1.5
1,587,279 + +0.5
1,587,280 - DZA65_RS07615 0.62 -0.1
1,587,280 - DZA65_RS07615 0.62 -0.8
1,587,280 - DZA65_RS07615 0.62 +0.3
1,587,365 + DZA65_RS07615 0.70 +0.7

Or see this region's nucleotide sequence