Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS07335

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,528,000	+		DZA65_RS07330	0.83	-1.6
1,528,001	-		DZA65_RS07330	0.84	-0.5
1,528,017	+		DZA65_RS07330	0.84	-0.5
1,528,017	+		DZA65_RS07330	0.84	-0.4
1,528,023	+		DZA65_RS07330	0.84	-0.5
1,528,024	-		DZA65_RS07330	0.84	-0.8
1,528,056	-		DZA65_RS07330	0.85	-0.8
1,528,056	-		DZA65_RS07330	0.85	-0.5
1,528,060	+		DZA65_RS07330	0.85	+0.9
1,528,060	+		DZA65_RS07330	0.85	+0.1
1,528,060	+		DZA65_RS07330	0.85	-1.0
1,528,061	-		DZA65_RS07330	0.85	-0.5
1,528,061	-		DZA65_RS07330	0.85	-2.3
1,528,061	-		DZA65_RS07330	0.85	+0.5
1,528,061	-		DZA65_RS07330	0.85	-0.3
1,528,061	-		DZA65_RS07330	0.85	-0.7
1,528,061	-		DZA65_RS07330	0.85	+0.2
1,528,062	+		DZA65_RS07330	0.85	+0.4
1,528,062	+		DZA65_RS07330	0.85	-0.7
1,528,062	+		DZA65_RS07330	0.85	+0.2
1,528,062	+		DZA65_RS07330	0.85	-0.3
1,528,062	+		DZA65_RS07330	0.85	-0.8
1,528,062	+		DZA65_RS07330	0.85	+0.5
1,528,062	+		DZA65_RS07330	0.85	-0.0
1,528,063	-		DZA65_RS07330	0.85	+0.2
1,528,063	-		DZA65_RS07330	0.85	+0.1
1,528,063	-		DZA65_RS07330	0.85	+0.1
1,528,063	-		DZA65_RS07330	0.85	+0.7
1,528,066	+		DZA65_RS07330	0.85	+0.8
1,528,066	+		DZA65_RS07330	0.85	-1.5
1,528,066	+		DZA65_RS07330	0.85	-0.1
1,528,066	+		DZA65_RS07330	0.85	-1.0
1,528,066	+		DZA65_RS07330	0.85	-1.1
1,528,067	-		DZA65_RS07330	0.85	-0.8
1,528,067	-		DZA65_RS07330	0.85	+0.7
1,528,067	-		DZA65_RS07330	0.85	+0.5
1,528,067	-		DZA65_RS07330	0.85	-0.6
1,528,081	+		DZA65_RS07330	0.85	+0.8
1,528,081	+		DZA65_RS07330	0.85	-0.1
1,528,081	+		DZA65_RS07330	0.85	+0.3
1,528,081	+		DZA65_RS07330	0.85	+0.8
1,528,088	+		DZA65_RS07330	0.85	-0.3
1,528,088	+		DZA65_RS07330	0.85	-2.2
1,528,088	+		DZA65_RS07330	0.85	-0.6
1,528,089	-		DZA65_RS07330	0.85	+0.2
1,528,089	-		DZA65_RS07330	0.85	-0.5
1,528,089	-		DZA65_RS07330	0.85	-0.8
1,528,125	+				+1.5
1,528,125	+		DZA65_RS07330	0.86	-0.5
1,528,125	+		DZA65_RS07330	0.86	-0.2
1,528,126	-				+0.9
1,528,126	-		DZA65_RS07330	0.86	+0.8
1,528,177	+		DZA65_RS07330	0.87	-1.1
1,528,177	+		DZA65_RS07330	0.87	-0.8
1,528,228	+		DZA65_RS07330	0.88	-0.6
1,528,228	+		DZA65_RS07330	0.88	-1.0
1,528,228	+		DZA65_RS07330	0.88	-0.1
1,528,228	+		DZA65_RS07330	0.88	+0.0
1,528,228	+		DZA65_RS07330	0.88	-0.4
1,528,228	+		DZA65_RS07330	0.88	-2.6
1,528,229	-		DZA65_RS07330	0.88	+0.5
1,528,229	-		DZA65_RS07330	0.88	+0.3
1,528,305	+		DZA65_RS07330	0.89	+0.5
1,528,305	+		DZA65_RS07330	0.89	-1.7
1,528,305	+		DZA65_RS07330	0.89	-0.5
1,528,306	-		DZA65_RS07330	0.89	+0.5
1,528,306	-		DZA65_RS07330	0.89	-0.8
1,528,306	-		DZA65_RS07330	0.89	-0.0
1,528,309	+		DZA65_RS07330	0.89	+0.9
1,528,309	+		DZA65_RS07330	0.89	+1.8
1,528,309	+		DZA65_RS07330	0.89	+1.1
1,528,310	-		DZA65_RS07330	0.89	-2.2
1,528,310	-		DZA65_RS07330	0.89	-0.4
1,528,310	-		DZA65_RS07330	0.89	-1.7
1,528,310	-		DZA65_RS07330	0.89	-1.7
1,528,310	-		DZA65_RS07330	0.89	-1.1
1,528,310	-		DZA65_RS07330	0.89	-0.2
1,528,310	-		DZA65_RS07330	0.89	-0.8
1,528,310	-		DZA65_RS07330	0.89	-1.7
1,528,330	-		DZA65_RS07330	0.89	-0.7
1,528,382	+				+0.9
1,528,382	+				-1.8
1,528,383	-				-1.1
1,528,383	-				-0.2
1,528,383	-				-0.5
1,528,383	-				-0.7
1,528,386	+				-1.5
1,528,386	+				+0.2
1,528,386	+				-1.0
1,528,386	+				+1.5
1,528,386	+				-0.8
1,528,387	-				-0.1
1,528,387	-				-0.6
1,528,404	+				-1.3
1,528,404	+				-1.9
1,528,405	-				-0.1
1,528,405	-				-1.5
1,528,443	+				-1.0
1,528,456	-				+0.3
1,528,474	+				+0.5
1,528,475	-				-0.5
1,528,475	-				+1.5
1,528,496	-				+0.8
1,528,516	+				-1.5
1,528,517	-				+0.3
1,528,534	-				-0.5
1,528,568	-				-0.8
1,528,612	-				-1.1
1,528,612	-				+0.5
1,528,634	-				-1.6
1,528,634	-				-0.4
1,528,645	+				-0.8
1,528,686	+				+0.6
1,528,686	+				+0.2
1,528,687	-				-1.4
1,528,702	+				-2.0
1,528,729	+				+1.5
1,528,734	+				+1.8
1,528,734	+				+0.8
1,528,734	+				-1.1
1,528,777	+				-0.9
1,528,777	+				-0.8
1,528,778	-				+0.1
1,528,814	-				+0.2
1,528,839	+				-0.8
1,528,840	-				-2.5
1,528,853	-				-0.4
1,528,878	+				-0.5
1,528,907	+				+0.9
1,528,908	-				-0.8
1,528,918	-				-0.5
1,528,918	-				-0.0
1,529,032	-				-0.8
1,529,047	+				+0.4
1,529,059	+		DZA65_RS07335	0.10	-1.3
1,529,084	+		DZA65_RS07335	0.13	-0.1
1,529,084	+		DZA65_RS07335	0.13	-0.4
1,529,119	+		DZA65_RS07335	0.16	-0.9
1,529,119	+		DZA65_RS07335	0.16	-0.6
1,529,275	+		DZA65_RS07335	0.32	-0.1
1,529,275	+		DZA65_RS07335	0.32	-2.7
1,529,275	+		DZA65_RS07335	0.32	+0.1
1,529,275	+		DZA65_RS07335	0.32	-1.5
1,529,276	-		DZA65_RS07335	0.32	-0.2
1,529,276	-		DZA65_RS07335	0.32	+0.9
1,529,317	+		DZA65_RS07335	0.36	-1.3
1,529,417	+		DZA65_RS07335	0.47	-0.5
1,529,454	+		DZA65_RS07335	0.50	+0.4
1,529,575	+		DZA65_RS07335	0.63	+1.1
1,529,576	-		DZA65_RS07335	0.63	-1.1
1,529,600	+		DZA65_RS07335	0.65	-0.6
1,529,644	+		DZA65_RS07335	0.70	+0.1
1,529,644	+		DZA65_RS07335	0.70	+0.7
1,529,644	+		DZA65_RS07335	0.70	-0.4
1,529,645	-		DZA65_RS07335	0.70	-0.2
1,529,645	-		DZA65_RS07335	0.70	-0.7
1,529,690	+		DZA65_RS07335	0.75	-0.3
1,529,691	-		DZA65_RS07335	0.75	+0.8
1,529,753	+		DZA65_RS07335	0.81	-1.1
1,529,753	+		DZA65_RS07335	0.81	+0.5
1,529,754	-		DZA65_RS07335	0.81	-0.8
1,529,754	-		DZA65_RS07335	0.81	-1.5
1,529,756	-		DZA65_RS07335	0.81	+1.1
1,529,756	-		DZA65_RS07335	0.81	-0.8
1,529,756	-		DZA65_RS07335	0.81	+0.2
1,529,756	-		DZA65_RS07335	0.81	-1.6
1,529,773	+		DZA65_RS07335	0.83	+1.2
1,529,773	+		DZA65_RS07335	0.83	+2.1
1,529,807	+		DZA65_RS07335	0.87	+0.9
1,529,858	+				+0.2
1,529,858	+				+0.8
1,529,858	+				+0.3
1,529,858	+				+0.2
1,529,858	+				+0.2
1,529,859	-				-1.3
1,529,859	-				-0.3
1,529,859	-				-1.3
1,529,859	-				-1.2
1,529,859	-				-1.1
1,529,859	-				-1.0
1,529,859	-				-0.8
1,529,879	-				+1.5
1,529,879	-				-0.5
1,529,879	-				+0.0
1,529,879	-				-1.7
1,529,880	+				-0.3
1,529,894	+				+0.3
1,529,894	+				+0.3
1,529,934	+				-1.2
1,529,934	+				-0.5
1,529,949	+				+0.5
1,529,949	+				-0.7
1,529,950	-				-0.7
1,529,956	+				-0.4
1,529,956	+				-0.6
1,529,957	-				-0.4
1,529,964	+				+0.9
1,529,964	+				-0.3
1,529,964	+				-0.1
1,530,044	+		DZA65_RS07340	0.20	-1.3
1,530,045	-		DZA65_RS07340	0.21	-1.5
1,530,264	+		DZA65_RS07340	0.86	+1.8
1,530,264	+		DZA65_RS07340	0.86	+0.9
1,530,289	+				+1.1
1,530,290	-				-0.8
1,530,321	+				+0.4
1,530,321	+				-0.9
1,530,321	+				+0.1
1,530,322	-				-1.1
1,530,322	-				-0.8
1,530,341	+				-0.8
1,530,364	+				-0.4
1,530,364	+				-0.9
1,530,364	+				+1.6
1,530,364	+				-1.3
1,530,364	+				-0.8
1,530,364	+				-0.6
1,530,364	+				-1.7
1,530,364	+				-0.3
1,530,365	-				-0.8
1,530,365	-				-0.8
1,530,365	-				-0.5
1,530,365	-				-0.7
1,530,365	-				-0.3
1,530,365	-				-0.8
1,530,434	-		DZA65_RS07345	0.14	+1.5
1,530,434	-		DZA65_RS07345	0.14	-0.1
1,530,434	-		DZA65_RS07345	0.14	-0.1
1,530,479	+		DZA65_RS07345	0.22	-1.1
1,530,480	-		DZA65_RS07345	0.22	+0.5
1,530,480	-		DZA65_RS07345	0.22	-0.8
1,530,480	-		DZA65_RS07345	0.22	+0.7
1,530,510	-		DZA65_RS07345	0.27	-0.6
1,530,510	-		DZA65_RS07345	0.27	-0.1
1,530,572	+		DZA65_RS07345	0.38	+0.8
1,530,572	+		DZA65_RS07345	0.38	-0.5
1,530,624	+		DZA65_RS07345	0.47	-0.5
1,530,624	+		DZA65_RS07345	0.47	+0.9
1,530,624	+		DZA65_RS07345	0.47	-1.8
1,530,625	-		DZA65_RS07345	0.47	-0.0
1,530,635	+		DZA65_RS07345	0.49	+1.2
1,530,635	+		DZA65_RS07345	0.49	+0.5
1,530,635	+		DZA65_RS07345	0.49	-1.1
1,530,653	+		DZA65_RS07345	0.52	-0.2
1,530,654	-		DZA65_RS07345	0.52	+1.5
1,530,654	-		DZA65_RS07345	0.52	-1.3
1,530,654	-		DZA65_RS07345	0.52	-1.1
1,530,684	+		DZA65_RS07345	0.57	+0.2
1,530,684	+		DZA65_RS07345	0.57	-2.9
1,530,684	+		DZA65_RS07345	0.57	-0.1
1,530,684	+		DZA65_RS07345	0.57	-1.3
1,530,684	+		DZA65_RS07345	0.57	-0.8
1,530,685	-		DZA65_RS07345	0.58	-0.5
1,530,685	-		DZA65_RS07345	0.58	-0.8
1,530,686	+		DZA65_RS07345	0.58	-1.4
1,530,686	+		DZA65_RS07345	0.58	-1.2
1,530,686	+		DZA65_RS07345	0.58	-0.1
1,530,686	+		DZA65_RS07345	0.58	-1.0
1,530,686	+		DZA65_RS07345	0.58	-1.2
1,530,686	+				+0.5
1,530,687	-		DZA65_RS07345	0.58	-0.3
1,530,687	-		DZA65_RS07345	0.58	-1.7
1,530,714	-		DZA65_RS07345	0.63	-0.5
1,530,741	+		DZA65_RS07345	0.67	+0.2
1,530,822	+		DZA65_RS07345	0.82	-0.5
1,530,822	+		DZA65_RS07345	0.82	+0.3
1,530,822	+		DZA65_RS07345	0.82	-0.5
1,530,823	-		DZA65_RS07345	0.82	+0.9
1,530,823	-		DZA65_RS07345	0.82	+1.5
1,530,823	-		DZA65_RS07345	0.82	-1.4
1,530,836	-		DZA65_RS07345	0.84	-1.2
1,530,913	+				+1.0
1,530,914	-				+0.2