Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS06645

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,380,857	+		DZA65_RS06640	0.65	-1.6
1,380,857	+		DZA65_RS06640	0.65	-0.5
1,380,857	+		DZA65_RS06640	0.65	+1.1
1,380,858	-		DZA65_RS06640	0.65	+1.2
1,380,858	-		DZA65_RS06640	0.65	+0.2
1,380,858	-		DZA65_RS06640	0.65	-0.8
1,380,859	+		DZA65_RS06640	0.65	-1.6
1,380,859	+		DZA65_RS06640	0.65	-1.0
1,380,860	-		DZA65_RS06640	0.65	-0.0
1,380,860	-		DZA65_RS06640	0.65	+0.3
1,380,860	-		DZA65_RS06640	0.65	-0.8
1,380,868	-		DZA65_RS06640	0.65	-2.3
1,380,883	+		DZA65_RS06640	0.66	-0.0
1,380,883	+		DZA65_RS06640	0.66	-1.6
1,380,883	+		DZA65_RS06640	0.66	-1.9
1,380,883	+		DZA65_RS06640	0.66	-0.9
1,380,883	+		DZA65_RS06640	0.66	+1.8
1,380,883	+		DZA65_RS06640	0.66	+0.1
1,380,884	-		DZA65_RS06640	0.66	+0.1
1,380,884	-		DZA65_RS06640	0.66	+1.5
1,380,985	-		DZA65_RS06640	0.74	-0.5
1,381,070	-		DZA65_RS06640	0.80	-1.1
1,381,070	-		DZA65_RS06640	0.80	+1.1
1,381,070	-		DZA65_RS06640	0.80	+0.3
1,381,220	+				+0.5
1,381,220	+				-0.5
1,381,220	+				-0.8
1,381,221	-				+1.5
1,381,268	-				-1.5
1,381,278	-				+0.4
1,381,278	-				-0.0
1,381,278	-				+1.1
1,381,288	-				-0.1
1,381,297	-				+0.2
1,381,312	+				-1.7
1,381,313	-				-0.2
1,381,313	-				-0.1
1,381,402	+				+0.1
1,381,402	+				-0.3
1,381,402	+				-1.0
1,381,403	-				-1.0
1,381,403	-				-0.6
1,381,411	-				-1.0
1,381,422	+				-0.0
1,381,423	-				+0.9
1,381,423	-				-0.3
1,381,436	+				+1.0
1,381,436	+				-0.3
1,381,436	+				+0.2
1,381,437	-				+0.1
1,381,442	-				+0.8
1,381,514	-				-1.0
1,381,518	+				+1.2
1,381,518	+				-0.7
1,381,519	-				-0.5
1,381,519	-				+1.5
1,381,519	-				-1.6
1,381,519	-				-1.0
1,381,558	-				-0.8
1,381,562	-				+0.3
1,381,562	-				-0.8
1,381,609	+				-0.2
1,381,609	+				-0.6
1,381,609	+				-1.5
1,381,609	+				-0.2
1,381,616	+				-0.6
1,381,616	+				-1.0
1,381,631	+				-1.6
1,381,631	+				-0.6
1,382,789	+				-0.3
1,382,789	+				+0.5
1,382,789	+				-0.6
1,382,789	+				+0.1
1,382,789	+				+1.1
1,382,789	+				-1.7
1,382,789	+				-0.5
1,382,790	-				-0.0
1,382,790	-				+1.0
1,382,819	+				-1.2
1,382,830	+				-0.3
1,382,830	+				+0.7
1,382,846	+				+0.1
1,382,868	+				-2.5
1,382,869	-				-0.3
1,382,951	+				-1.4
1,382,978	+				+0.2
1,382,978	+				-0.3
1,382,978	+				+0.4
1,382,978	+				-0.6
1,382,978	+				-1.2
1,382,978	+				-0.6
1,382,979	-				-0.0
1,382,979	-				-0.0
1,382,979	-				+1.5
1,382,979	-				-1.6
1,382,979	-				-1.4
1,382,979	-				-0.7
1,382,979	-				-0.0
1,382,979	-				-1.2
1,382,979	-				-1.3
1,382,979	-				-0.0
1,382,979	-				-0.5
1,382,979	-				-1.8
1,382,982	+				-0.3
1,382,983	-				-0.7
1,383,086	+		DZA65_RS06650	0.35	-1.0
1,383,086	+		DZA65_RS06650	0.35	+0.2
1,383,086	+		DZA65_RS06650	0.35	+0.5
1,383,086	+		DZA65_RS06650	0.35	+0.1
1,383,086	+		DZA65_RS06650	0.35	-1.8
1,383,087	-		DZA65_RS06650	0.35	+0.5
1,383,087	-		DZA65_RS06650	0.35	-1.5
1,383,087	-		DZA65_RS06650	0.35	+1.5
1,383,087	-		DZA65_RS06650	0.35	-0.0
1,383,087	-		DZA65_RS06650	0.35	+1.0
1,383,087	-		DZA65_RS06650	0.35	-0.8
1,383,087	-		DZA65_RS06650	0.35	-0.0
1,383,087	-		DZA65_RS06650	0.35	-2.0
1,383,087	-		DZA65_RS06650	0.35	-1.4
1,383,101	+		DZA65_RS06650	0.39	-1.5
1,383,101	+		DZA65_RS06650	0.39	-2.2
1,383,101	+		DZA65_RS06650	0.39	-2.0
1,383,101	+		DZA65_RS06650	0.39	+0.4
1,383,101	+		DZA65_RS06650	0.39	-0.3
1,383,102	-		DZA65_RS06650	0.39	-0.7
1,383,102	-		DZA65_RS06650	0.39	-0.8
1,383,102	-		DZA65_RS06650	0.39	+0.4
1,383,146	+		DZA65_RS06650	0.53	-3.0
1,383,147	-		DZA65_RS06650	0.53	-1.3
1,383,165	+		DZA65_RS06650	0.58	+0.8
1,383,165	+		DZA65_RS06650	0.58	-0.2
1,383,165	+		DZA65_RS06650	0.58	-1.3
1,383,166	-		DZA65_RS06650	0.59	-0.5
1,383,350	+				-0.0
1,383,350	+				-0.5
1,383,350	+				-0.5
1,383,351	-				-0.5
1,383,351	-				-0.4
1,383,353	+				-1.8
1,383,371	-				+0.5
1,383,375	-				-0.0
1,383,375	-				-0.7
1,383,426	-				-1.5
1,383,505	+				+1.0
1,383,506	-				-1.3
1,383,549	+		DZA65_RS06660	0.51	+0.8
1,383,550	-		DZA65_RS06660	0.52	-1.3
1,383,550	-		DZA65_RS06660	0.52	+0.7
1,383,550	-		DZA65_RS06660	0.52	-1.0
1,383,550	-		DZA65_RS06660	0.52	-0.8
1,383,578	+		DZA65_RS06660	0.88	-2.7
1,383,578	+		DZA65_RS06660	0.88	-1.3