Strain Fitness in Dickeya dianthicola ME23

Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS06515

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	LB
				remove
1,354,607	-			-0.8
1,354,628	+			+0.1
1,354,628	+			-1.4
1,354,629	-			+0.2
1,354,629	-			-2.6
1,354,629	-			+0.1
1,354,630	+			-1.6
1,354,631	-			+0.3
1,354,631	-			-1.6
1,354,666	+			+0.4
1,354,666	+			+0.5
1,354,667	-			-1.3
1,354,667	-			+0.3
1,354,667	-			-0.9
1,354,667	-			+0.1
1,354,731	-			+0.4
1,354,731	-			-1.0
1,354,731	-			+0.1
1,354,742	+			+0.3
1,354,742	+			-0.6
1,354,743	-			+0.5
1,354,751	+			-1.2
1,354,752	-			-0.4
1,354,754	+			+0.1
1,354,762	+			-0.6
1,354,767	-			-1.0
1,354,767	-			-2.9
1,354,775	+			-1.5
1,354,776	-			-0.8
1,354,780	-			+0.5
1,354,801	+			+1.1
1,354,802	-			-1.8
1,354,836	+			+0.2
1,354,836	+			-1.0
1,354,836	+			-0.7
1,354,836	+			+0.1
1,354,836	+			+0.2
1,354,837	-			-1.1
1,354,837	-			+0.1
1,354,837	-			+0.6
1,354,856	+			-1.2
1,354,903	+			-1.3
1,354,909	+			-0.8
1,354,909	+			-1.0
1,354,910	-			-0.0
1,354,966	+			-1.2
1,355,011	+			+1.0
1,355,012	-			-1.6
1,355,033	+			-1.4
1,355,067	+			-0.3
1,355,067	+			-1.3
1,355,115	+			-0.0
1,355,115	+			-0.3
1,355,115	+			+0.8
1,355,115	+			-0.7
1,355,116	-			-1.0
1,355,116	-			-0.2
1,355,118	+			-1.0
1,355,119	-			-0.6
1,355,119	-			+0.2
1,355,133	+			-0.3
1,355,303	+	DZA65_RS06510	0.11	-2.0
1,355,303	+	DZA65_RS06510	0.11	-0.6
1,355,303	+	DZA65_RS06510	0.11	-0.5
1,355,487	+			-0.6
1,355,487	+			+0.3
1,355,487	+			-1.0
1,355,488	-			+0.8
1,355,531	+			+0.2
1,355,531	+			-1.6
1,355,531	+			-1.6
1,355,532	-			-0.3
1,355,563	+			+1.0
1,355,665	+	DZA65_RS06515	0.30	-0.6
1,355,774	+	DZA65_RS06515	0.58	-1.2
1,355,774	+	DZA65_RS06515	0.58	-1.6
1,355,774	+	DZA65_RS06515	0.58	+0.1
1,355,774	+	DZA65_RS06515	0.58	+1.7
1,355,775	-	DZA65_RS06515	0.58	-1.5
1,355,793	+	DZA65_RS06515	0.63	-0.2
1,355,793	+	DZA65_RS06515	0.63	+0.4
1,355,853	+	DZA65_RS06515	0.79	+0.2
1,355,854	-	DZA65_RS06515	0.79	-0.8
1,355,856	+	DZA65_RS06515	0.79	-0.4
1,355,857	-	DZA65_RS06515	0.80	+0.5
1,355,857	-	DZA65_RS06515	0.80	+0.5
1,355,857	-	DZA65_RS06515	0.80	+0.3
1,355,920	+			-1.6
1,355,920	+			-0.9
1,355,921	-			-0.3
1,355,925	+			-0.5
1,355,925	+			-0.5
1,355,925	+			-0.8
1,355,926	-			+0.5
1,355,926	-			-0.5
1,355,926	-			-0.3
1,355,926	-			-0.5
1,355,926	-			-0.6
1,355,926	-			+0.1
1,355,926	-			-0.3
1,355,928	+			-0.4
1,355,928	+			+0.1
1,355,928	+			+0.5
1,355,929	-			-0.4
1,355,929	-			-0.3
1,355,929	-			-1.3
1,355,929	-			+0.1
1,355,930	+			+0.2
1,355,930	+			+0.2
1,355,930	+			-1.0
1,355,930	+			-0.3
1,355,930	+			-0.8
1,355,930	+			-0.2
1,355,930	+			-0.1
1,355,930	+			+1.1
1,355,930	+			+0.7
1,355,930	+			-1.8
1,355,930	+			+0.2
1,355,931	-			+2.0
1,355,931	-			+0.7
1,355,931	-			+0.5
1,355,931	-			-0.9
1,355,931	-			+2.1
1,355,931	-			+0.2
1,355,931	-			-0.1
1,355,931	-			-1.3
1,355,931	-			-0.2
1,355,931	-			-0.4
1,355,931	-			-0.0
1,355,931	-			+0.7
1,355,931	-			-2.3
1,355,931	-			-0.9
1,355,931	-			-1.9
1,355,931	-			-1.0
1,355,934	+			-1.4
1,355,934	+			-0.3
1,355,934	+			-1.0
1,355,934	+			-0.5
1,355,934	+			+0.2
1,355,934	+			-0.5
1,355,934	+			+0.5
1,355,934	+			-2.3
1,355,934	+			-0.5
1,355,934	+			-0.5
1,355,934	+			-0.5
1,355,934	+			-0.6
1,355,934	+			-0.3
1,355,934	+			+0.5
1,355,934	+			-1.0
1,355,935	-			-0.2
1,355,935	-			-0.3
1,355,935	-			+0.8
1,355,935	-			-1.3
1,355,935	-			-0.5
1,355,935	-			-0.0
1,355,935	-			+2.5
1,355,935	-			-1.5
1,355,935	-			+0.0
1,355,938	+			+1.1
1,355,939	-			-1.5
1,356,060	-			-1.8
1,356,089	+			-0.3
1,356,089	+			-2.6
1,356,113	+			-0.6
1,356,114	-			-0.0
1,356,124	+			+0.5
1,356,124	+			+0.1
1,356,124	+			-0.5
1,356,124	+			-0.3
1,356,124	+			-1.6
1,356,125	-			-1.8
1,356,125	-			-0.3
1,356,125	-			-0.7
1,356,125	-			-0.4
1,356,125	-			+1.5
1,356,128	+			-1.6
1,356,128	+			+0.1
1,356,128	+			-0.2
1,356,128	+			-2.3
1,356,128	+			-0.0
1,356,129	-			-0.4
1,356,129	-			-0.4
1,356,129	-			-0.7
1,356,129	-			+2.3
1,356,129	-			+0.1
1,356,143	+			-2.3
1,356,144	-			-1.3
1,356,144	-			-0.5
1,356,208	+			-1.8
1,356,208	+			-0.6
1,356,208	+			+1.1
1,356,208	+			-0.2
1,356,214	+			-2.1
1,356,214	+			-0.8
1,356,215	-			-1.0
1,356,285	-	DZA65_RS06520	0.18	-0.0
1,356,285	-	DZA65_RS06520	0.18	-2.0
1,356,386	+	DZA65_RS06520	0.31	-1.3
1,356,395	+	DZA65_RS06520	0.32	-1.2
1,356,395	+	DZA65_RS06520	0.32	-1.9
1,356,395	+	DZA65_RS06520	0.32	-0.0
1,356,395	+	DZA65_RS06520	0.32	-1.0
1,356,396	-	DZA65_RS06520	0.32	+1.5
1,356,396	-	DZA65_RS06520	0.32	-0.8
1,356,396	-	DZA65_RS06520	0.32	-0.3
1,356,418	+	DZA65_RS06520	0.35	-0.1
1,356,418	+	DZA65_RS06520	0.35	-0.6
1,356,419	-	DZA65_RS06520	0.35	+0.4
1,356,422	+	DZA65_RS06520	0.35	-1.2
1,356,422	+	DZA65_RS06520	0.35	-1.4
1,356,422	+	DZA65_RS06520	0.35	-0.6
1,356,422	+	DZA65_RS06520	0.35	-0.6
1,356,422	+	DZA65_RS06520	0.35	+0.5
1,356,422	+	DZA65_RS06520	0.35	-0.5
1,356,423	-	DZA65_RS06520	0.35	-0.8
1,356,423	-	DZA65_RS06520	0.35	-0.5
1,356,423	-	DZA65_RS06520	0.35	+1.0
1,356,423	-	DZA65_RS06520	0.35	+1.1
1,356,423	-	DZA65_RS06520	0.35	-1.0
1,356,423	-	DZA65_RS06520	0.35	-2.1
1,356,423	-			+0.1
1,356,425	+	DZA65_RS06520	0.36	+0.1
1,356,425	+	DZA65_RS06520	0.36	+0.7
1,356,425	+	DZA65_RS06520	0.36	+0.3
1,356,425	+	DZA65_RS06520	0.36	+0.8
1,356,425	+	DZA65_RS06520	0.36	-0.6
1,356,425	+	DZA65_RS06520	0.36	+0.2
1,356,425	+	DZA65_RS06520	0.36	-0.8
1,356,425	+	DZA65_RS06520	0.36	+0.0
1,356,425	+	DZA65_RS06520	0.36	-1.5
1,356,425	+	DZA65_RS06520	0.36	-0.5
1,356,425	+	DZA65_RS06520	0.36	-2.2
1,356,425	+	DZA65_RS06520	0.36	-1.3
1,356,425	+	DZA65_RS06520	0.36	-0.6
1,356,425	+	DZA65_RS06520	0.36	-0.3
1,356,425	+	DZA65_RS06520	0.36	+0.3
1,356,426	-	DZA65_RS06520	0.36	+0.7
1,356,426	-	DZA65_RS06520	0.36	-1.0
1,356,426	-	DZA65_RS06520	0.36	-0.3
1,356,426	-	DZA65_RS06520	0.36	-1.6
1,356,426	-	DZA65_RS06520	0.36	-0.3
1,356,426	-	DZA65_RS06520	0.36	-0.9
1,356,426	-	DZA65_RS06520	0.36	-0.8
1,356,426	-	DZA65_RS06520	0.36	-1.8
1,356,426	-	DZA65_RS06520	0.36	+0.4
1,356,426	-	DZA65_RS06520	0.36	-0.5
1,356,426	-	DZA65_RS06520	0.36	-0.7
1,356,426	-	DZA65_RS06520	0.36	-0.0
1,356,426	-	DZA65_RS06520	0.36	-2.4
1,356,426	-	DZA65_RS06520	0.36	-0.5
1,356,483	+	DZA65_RS06520	0.43	-1.5
1,356,483	+	DZA65_RS06520	0.43	-0.6
1,356,483	+	DZA65_RS06520	0.43	-2.1
1,356,483	+	DZA65_RS06520	0.43	+1.2
1,356,483	+	DZA65_RS06520	0.43	-0.5
1,356,483	+	DZA65_RS06520	0.43	+0.1
1,356,484	-	DZA65_RS06520	0.43	+0.4
1,356,484	-	DZA65_RS06520	0.43	-0.0
1,356,484	-	DZA65_RS06520	0.43	+0.4
1,356,484	-	DZA65_RS06520	0.43	+0.2
1,356,484	-			-0.0
1,356,484	-	DZA65_RS06520	0.43	-0.5
1,356,484	-	DZA65_RS06520	0.43	+0.4
1,356,484	-	DZA65_RS06520	0.43	-0.5
1,356,484	-	DZA65_RS06520	0.43	+0.5
1,356,494	+	DZA65_RS06520	0.44	-1.0
1,356,495	-	DZA65_RS06520	0.44	+0.5
1,356,586	-	DZA65_RS06520	0.56	-0.8
1,356,732	+	DZA65_RS06520	0.75	+0.1
1,356,733	-	DZA65_RS06520	0.75	+0.5
1,356,733	-	DZA65_RS06520	0.75	+0.5
1,356,777	-	DZA65_RS06520	0.80	-1.5
1,356,835	+	DZA65_RS06520	0.88	-0.8
1,356,835	+	DZA65_RS06520	0.88	+1.3
1,356,836	-	DZA65_RS06520	0.88	-0.5
1,356,836	-	DZA65_RS06520	0.88	+0.3
1,356,886	+			-1.0
1,356,886	+			+1.0
1,356,886	+			-1.5
1,356,886	+			-2.2
1,356,887	-			-1.3
1,356,887	-			+0.5
1,356,895	+			+0.2
1,356,895	+			+0.2
1,356,895	+			-0.7
1,356,895	+			+0.2
1,356,895	+			-1.6
1,356,896	-			+0.0
1,356,896	-			+0.1
1,356,896	-			-1.0
1,356,896	-			-0.3
1,356,896	-			+0.2
1,356,896	-			-2.0
1,356,896	-			+1.0
1,356,922	+			+0.1
1,356,922	+			-0.3
1,356,923	-			-1.5
1,356,923	-			-0.9
1,356,923	-			-0.0
1,356,925	+			+1.0
1,356,925	+			-0.5
1,356,925	+			-0.5
1,356,925	+			-0.0
1,356,926	-			-0.8
1,356,926	-			+0.5
1,356,930	+			-2.0

Or see this region's nucleotide sequence