Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS06430

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,339,038	-				+0.6
1,339,038	-				-0.0
1,339,044	+				-0.4
1,339,044	+				-0.3
1,339,045	-				+0.2
1,339,045	-				+0.2
1,339,045	-				+0.1
1,339,061	+				+0.7
1,339,061	+				-0.7
1,339,063	+				-0.5
1,339,063	+				-0.2
1,339,064	-				-0.0
1,339,064	-				+0.6
1,339,064	-				-0.1
1,339,064	-				-1.7
1,339,111	+				-0.2
1,339,112	-				-0.7
1,339,151	+				+0.1
1,339,151	+				-0.8
1,339,151	+				-0.4
1,339,151	+				-0.6
1,339,151	+				-1.2
1,339,151	+				+1.0
1,339,151	+				-0.8
1,339,152	-				-0.8
1,339,152	-				-0.4
1,339,152	-				+0.2
1,339,152	-				-0.0
1,339,152	-				+0.2
1,339,185	-		DZA65_RS06425	0.11	-0.3
1,339,233	+		DZA65_RS06425	0.19	-1.2
1,339,233	+		DZA65_RS06425	0.19	+0.8
1,339,234	-		DZA65_RS06425	0.19	-1.0
1,339,325	+		DZA65_RS06425	0.34	-0.8
1,339,325	+		DZA65_RS06425	0.34	-1.4
1,339,417	-		DZA65_RS06425	0.48	+0.6
1,339,484	+		DZA65_RS06425	0.59	+0.2
1,339,484	+		DZA65_RS06425	0.59	-0.2
1,339,648	-		DZA65_RS06425	0.85	-0.4
1,339,686	+				+0.6
1,339,686	+				+1.8
1,339,686	+				+0.1
1,339,686	+				-0.8
1,339,686	+				-1.2
1,339,686	+				+0.9
1,339,687	-				-0.9
1,339,687	-				-0.1
1,339,687	-				+0.3
1,339,687	-				-0.0
1,339,687	-				-1.9
1,339,731	-				-0.4
1,339,740	+				-0.2
1,339,740	+				-1.4
1,339,819	-				-0.9
1,339,819	-				+0.6
1,339,904	+				-1.1
1,339,905	-				-1.8
1,339,905	-				-0.0
1,339,905	-				+0.2
1,339,905	-				-1.4
1,339,905	-				+1.6
1,340,088	+		DZA65_RS06430	0.13	-1.6
1,340,088	+		DZA65_RS06430	0.13	+0.6
1,340,088	+		DZA65_RS06430	0.13	-0.6
1,340,089	-		DZA65_RS06430	0.13	+0.7
1,340,089	-		DZA65_RS06430	0.13	-1.0
1,340,102	+		DZA65_RS06430	0.14	-0.4
1,340,103	-		DZA65_RS06430	0.14	-0.9
1,340,121	+		DZA65_RS06430	0.15	-0.1
1,340,121	+		DZA65_RS06430	0.15	+0.2
1,340,122	-		DZA65_RS06430	0.16	+0.2
1,340,122	-		DZA65_RS06430	0.16	-1.0
1,340,122	-		DZA65_RS06430	0.16	+1.0
1,340,155	+		DZA65_RS06430	0.18	-1.1
1,340,156	-		DZA65_RS06430	0.18	+1.3
1,340,156	-		DZA65_RS06430	0.18	-1.9
1,340,156	-		DZA65_RS06430	0.18	-0.4
1,340,164	+		DZA65_RS06430	0.19	-0.3
1,340,165	-		DZA65_RS06430	0.19	-1.3
1,340,388	-		DZA65_RS06430	0.36	+1.3
1,340,388	-		DZA65_RS06430	0.36	+0.7
1,340,399	+		DZA65_RS06430	0.37	-0.4
1,340,399	+		DZA65_RS06430	0.37	-0.3
1,340,400	-		DZA65_RS06430	0.37	-0.4
1,340,496	+		DZA65_RS06430	0.44	-1.2
1,340,496	+		DZA65_RS06430	0.44	-0.2
1,340,496	+		DZA65_RS06430	0.44	-1.0
1,340,497	-		DZA65_RS06430	0.44	-0.3
1,340,574	+		DZA65_RS06430	0.50	+0.3
1,340,575	-		DZA65_RS06430	0.50	-0.1
1,340,575	-		DZA65_RS06430	0.50	-0.8
1,340,672	+		DZA65_RS06430	0.58	-0.8
1,340,774	+				+1.2
1,340,775	-		DZA65_RS06430	0.66	-1.0
1,340,775	-		DZA65_RS06430	0.66	+0.5
1,340,781	+		DZA65_RS06430	0.66	-0.0
1,340,781	+		DZA65_RS06430	0.66	+0.1
1,340,781	+		DZA65_RS06430	0.66	+1.0
1,340,781	+		DZA65_RS06430	0.66	-0.0
1,340,782	-		DZA65_RS06430	0.66	+1.0
1,340,782	-		DZA65_RS06430	0.66	-1.1
1,340,782	-		DZA65_RS06430	0.66	+0.7
1,340,782	-		DZA65_RS06430	0.66	-0.0
1,340,782	-		DZA65_RS06430	0.66	-1.4
1,340,782	-		DZA65_RS06430	0.66	+0.8
1,340,792	+		DZA65_RS06430	0.67	-0.0
1,340,820	+		DZA65_RS06430	0.69	-1.2
1,340,821	-		DZA65_RS06430	0.69	+0.2
1,340,943	+		DZA65_RS06430	0.79	+0.4
1,340,944	-		DZA65_RS06430	0.79	-0.1
1,340,997	+		DZA65_RS06430	0.83	-0.4
1,340,997	+		DZA65_RS06430	0.83	+1.2
1,340,997	+		DZA65_RS06430	0.83	-0.5
1,340,997	+		DZA65_RS06430	0.83	-1.9
1,340,997	+		DZA65_RS06430	0.83	-0.4
1,341,172	+				-0.5
1,341,172	+				+0.2
1,341,172	+				+0.2
1,341,172	+				-0.1
1,341,172	+				+0.1
1,341,172	+				-0.2
1,341,173	-				+1.6
1,341,173	-				-0.4
1,341,173	-				-1.0
1,341,173	-				-1.4
1,341,173	-				-0.0
1,341,173	-				-1.0
1,341,181	+				+0.4
1,341,181	+				+0.1
1,341,181	+				+0.3
1,341,182	-				-0.8
1,341,182	-				-0.0
1,341,182	-				-1.5
1,341,182	-				-2.1
1,341,182	-				-0.3
1,341,182	-				-1.3
1,341,216	+				+0.0
1,341,216	+				-0.3
1,341,216	+				-2.3
1,341,217	-				-0.2
1,341,217	-				+0.6
1,341,217	-				-1.4
1,341,217	-				-0.8
1,341,217	-				+0.1
1,341,230	+				-0.4
1,341,231	-				-0.7
1,341,231	-				+0.6
1,341,231	-				+0.4
1,341,231	-				-0.8
1,341,231	-				+0.0
1,341,256	+				-1.0
1,341,256	+				+0.2
1,341,256	+				-0.8
1,341,256	+				-0.2
1,341,257	-				-1.0
1,341,257	-				-0.2
1,341,257	-				+0.8
1,341,257	-				+0.8
1,341,262	+				-0.4
1,341,262	+				-0.3
1,341,263	-				-0.0
1,341,263	-				-0.0
1,341,263	-				-0.0
1,341,332	+				+1.1
1,341,332	+				+0.1
1,341,332	+				+0.6
1,341,332	+				-1.4
1,341,332	+				+0.7
1,341,333	-				+0.2
1,341,333	-				+0.1
1,341,337	+				-0.1
1,342,079	-				-0.1
1,342,099	-				-0.0
1,342,132	-		DZA65_RS06440	0.12	+2.1