Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS05745

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS05735 and DZA65_RS05740 overlap by 2 nucleotidesDZA65_RS05740 and DZA65_RS05745 are separated by 194 nucleotidesDZA65_RS05745 and DZA65_RS05750 are separated by 12 nucleotidesDZA65_RS05750 and DZA65_RS05755 are separated by 130 nucleotides DZA65_RS05735: DZA65_RS05735 - MFS transporter, at 1,177,878 to 1,178,402 _RS05735 DZA65_RS05740: DZA65_RS05740 - M20/M25/M40 family metallo-hydrolase, at 1,178,401 to 1,179,141 _RS05740 DZA65_RS05745: DZA65_RS05745 - LysR family transcriptional regulator, at 1,179,336 to 1,180,277 _RS05745 DZA65_RS05750: DZA65_RS05750 - HAD family hydrolase, at 1,180,290 to 1,180,946 _RS05750 DZA65_RS05755: DZA65_RS05755 - alpha/beta fold hydrolase, at 1,181,077 to 1,182,276 _RS05755 Position (kb) 1179 1180 1181Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1178.353 kb on + strandat 1178.353 kb on + strandat 1178.353 kb on + strandat 1178.354 kb on - strandat 1178.354 kb on - strandat 1178.371 kb on + strandat 1178.480 kb on + strand, within DZA65_RS05740at 1178.480 kb on + strand, within DZA65_RS05740at 1178.736 kb on + strand, within DZA65_RS05740at 1178.737 kb on - strand, within DZA65_RS05740at 1178.737 kb on - strand, within DZA65_RS05740at 1178.742 kb on + strand, within DZA65_RS05740at 1178.742 kb on + strand, within DZA65_RS05740at 1178.743 kb on - strand, within DZA65_RS05740at 1178.743 kb on - strand, within DZA65_RS05740at 1178.780 kb on + strand, within DZA65_RS05740at 1179.008 kb on + strand, within DZA65_RS05740at 1179.009 kb on - strand, within DZA65_RS05740at 1179.009 kb on - strand, within DZA65_RS05740at 1179.016 kb on + strand, within DZA65_RS05740at 1179.016 kb on + strand, within DZA65_RS05740at 1179.016 kb on + strand, within DZA65_RS05740at 1179.016 kb on + strand, within DZA65_RS05740at 1179.016 kb on + strand, within DZA65_RS05740at 1179.017 kb on - strand, within DZA65_RS05740at 1179.017 kb on - strand, within DZA65_RS05740at 1179.017 kb on - strand, within DZA65_RS05740at 1179.017 kb on - strand, within DZA65_RS05740at 1179.017 kb on - strand, within DZA65_RS05740at 1179.017 kb on - strand, within DZA65_RS05740at 1179.063 kb on + strand, within DZA65_RS05740at 1179.076 kb on + strandat 1179.105 kb on - strandat 1179.123 kb on + strandat 1179.123 kb on + strandat 1179.173 kb on + strandat 1179.214 kb on + strandat 1179.215 kb on - strandat 1179.237 kb on + strandat 1179.237 kb on + strandat 1179.237 kb on + strandat 1179.237 kb on + strandat 1179.238 kb on - strandat 1179.238 kb on - strandat 1179.238 kb on - strandat 1179.238 kb on - strandat 1179.269 kb on - strandat 1179.296 kb on + strandat 1179.341 kb on + strandat 1179.342 kb on - strandat 1179.342 kb on - strandat 1179.357 kb on + strandat 1179.357 kb on + strandat 1179.377 kb on + strandat 1179.428 kb on + strandat 1179.431 kb on + strand, within DZA65_RS05745at 1179.431 kb on + strand, within DZA65_RS05745at 1179.724 kb on + strand, within DZA65_RS05745at 1180.014 kb on + strand, within DZA65_RS05745at 1180.014 kb on + strand, within DZA65_RS05745at 1180.014 kb on + strand, within DZA65_RS05745at 1180.015 kb on - strand, within DZA65_RS05745at 1180.015 kb on - strand, within DZA65_RS05745at 1180.017 kb on + strand, within DZA65_RS05745at 1180.017 kb on + strand, within DZA65_RS05745at 1180.018 kb on - strand, within DZA65_RS05745at 1180.018 kb on - strand, within DZA65_RS05745at 1180.018 kb on - strand, within DZA65_RS05745at 1180.018 kb on - strand, within DZA65_RS05745at 1180.018 kb on - strand, within DZA65_RS05745at 1180.074 kb on + strand, within DZA65_RS05745at 1180.164 kb on - strand, within DZA65_RS05745at 1180.202 kb on + strandat 1180.366 kb on + strand, within DZA65_RS05750at 1180.366 kb on + strand, within DZA65_RS05750at 1180.367 kb on - strand, within DZA65_RS05750at 1180.367 kb on - strand, within DZA65_RS05750at 1180.367 kb on - strand, within DZA65_RS05750at 1180.485 kb on - strand, within DZA65_RS05750at 1180.485 kb on - strand, within DZA65_RS05750at 1180.495 kb on + strand, within DZA65_RS05750at 1180.568 kb on + strand, within DZA65_RS05750at 1180.622 kb on + strand, within DZA65_RS05750at 1180.622 kb on + strand, within DZA65_RS05750at 1180.622 kb on + strand, within DZA65_RS05750at 1180.622 kb on + strand, within DZA65_RS05750at 1180.623 kb on - strand, within DZA65_RS05750at 1180.623 kb on - strand, within DZA65_RS05750at 1180.623 kb on - strand, within DZA65_RS05750at 1180.623 kb on - strand, within DZA65_RS05750at 1180.623 kb on - strand, within DZA65_RS05750at 1180.626 kb on + strand, within DZA65_RS05750at 1180.626 kb on + strand, within DZA65_RS05750at 1180.626 kb on + strand, within DZA65_RS05750at 1180.627 kb on - strand, within DZA65_RS05750at 1180.774 kb on + strandat 1180.774 kb on + strand, within DZA65_RS05750at 1180.774 kb on + strand, within DZA65_RS05750at 1180.774 kb on + strand, within DZA65_RS05750at 1180.774 kb on + strand, within DZA65_RS05750at 1180.775 kb on - strand, within DZA65_RS05750at 1180.775 kb on - strand, within DZA65_RS05750at 1180.775 kb on - strand, within DZA65_RS05750at 1180.775 kb on - strand, within DZA65_RS05750at 1180.775 kb on - strand, within DZA65_RS05750at 1180.780 kb on + strand, within DZA65_RS05750at 1180.780 kb on + strand, within DZA65_RS05750at 1180.780 kb on + strand, within DZA65_RS05750at 1180.780 kb on + strand, within DZA65_RS05750at 1180.780 kb on + strand, within DZA65_RS05750at 1180.780 kb on + strand, within DZA65_RS05750at 1180.780 kb on + strand, within DZA65_RS05750at 1180.780 kb on + strand, within DZA65_RS05750at 1180.780 kb on + strand, within DZA65_RS05750at 1180.780 kb on + strand, within DZA65_RS05750at 1180.781 kb on - strand, within DZA65_RS05750at 1180.781 kb on - strand, within DZA65_RS05750at 1180.781 kb on - strand, within DZA65_RS05750at 1180.781 kb on - strand, within DZA65_RS05750at 1180.781 kb on - strand, within DZA65_RS05750at 1180.781 kb on - strand, within DZA65_RS05750at 1180.781 kb on - strand, within DZA65_RS05750at 1180.781 kb on - strand, within DZA65_RS05750at 1180.781 kb on - strand, within DZA65_RS05750at 1180.781 kb on - strand, within DZA65_RS05750at 1180.781 kb on - strand, within DZA65_RS05750at 1180.781 kb on - strand, within DZA65_RS05750at 1180.807 kb on + strand, within DZA65_RS05750at 1180.807 kb on + strand, within DZA65_RS05750at 1180.807 kb on + strand, within DZA65_RS05750at 1180.807 kb on + strand, within DZA65_RS05750at 1180.808 kb on - strand, within DZA65_RS05750at 1180.808 kb on - strand, within DZA65_RS05750at 1180.808 kb on - strand, within DZA65_RS05750at 1180.808 kb on - strand, within DZA65_RS05750at 1180.810 kb on + strand, within DZA65_RS05750at 1180.810 kb on + strand, within DZA65_RS05750at 1180.810 kb on + strand, within DZA65_RS05750at 1180.811 kb on - strand, within DZA65_RS05750at 1180.811 kb on - strand, within DZA65_RS05750at 1180.811 kb on - strand, within DZA65_RS05750at 1180.811 kb on - strand, within DZA65_RS05750at 1180.811 kb on - strand, within DZA65_RS05750at 1180.811 kb on - strand, within DZA65_RS05750at 1180.811 kb on - strand, within DZA65_RS05750at 1180.811 kb on - strand, within DZA65_RS05750at 1180.839 kb on + strand, within DZA65_RS05750at 1180.839 kb on + strand, within DZA65_RS05750at 1180.938 kb on + strandat 1180.939 kb on - strandat 1181.013 kb on + strandat 1181.013 kb on + strandat 1181.013 kb on + strandat 1181.014 kb on - strandat 1181.014 kb on - strandat 1181.014 kb on - strandat 1181.014 kb on - strandat 1181.051 kb on + strandat 1181.051 kb on + strandat 1181.051 kb on + strandat 1181.051 kb on + strandat 1181.051 kb on + strandat 1181.052 kb on - strandat 1181.052 kb on - strandat 1181.052 kb on - strandat 1181.052 kb on - strandat 1181.168 kb on + strandat 1181.168 kb on + strandat 1181.169 kb on - strandat 1181.169 kb on - strandat 1181.204 kb on + strand, within DZA65_RS05755at 1181.269 kb on + strand, within DZA65_RS05755at 1181.269 kb on + strand, within DZA65_RS05755at 1181.270 kb on - strand, within DZA65_RS05755at 1181.270 kb on - strand, within DZA65_RS05755at 1181.270 kb on - strand, within DZA65_RS05755

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,178,353 + -0.4
1,178,353 + +0.4
1,178,353 + +0.3
1,178,354 - +0.1
1,178,354 - -0.4
1,178,371 + +0.1
1,178,480 + DZA65_RS05740 0.11 -0.5
1,178,480 + DZA65_RS05740 0.11 +0.6
1,178,736 + DZA65_RS05740 0.45 -1.1
1,178,737 - DZA65_RS05740 0.45 -0.2
1,178,737 - DZA65_RS05740 0.45 -1.2
1,178,742 + DZA65_RS05740 0.46 -0.4
1,178,742 + DZA65_RS05740 0.46 +0.2
1,178,743 - DZA65_RS05740 0.46 -1.4
1,178,743 - DZA65_RS05740 0.46 -0.0
1,178,780 + DZA65_RS05740 0.51 +0.3
1,179,008 + DZA65_RS05740 0.82 +0.2
1,179,009 - DZA65_RS05740 0.82 -0.8
1,179,009 - DZA65_RS05740 0.82 -0.9
1,179,016 + DZA65_RS05740 0.83 -0.2
1,179,016 + DZA65_RS05740 0.83 +1.8
1,179,016 + DZA65_RS05740 0.83 -0.3
1,179,016 + DZA65_RS05740 0.83 -0.9
1,179,016 + DZA65_RS05740 0.83 -0.8
1,179,017 - DZA65_RS05740 0.83 -1.1
1,179,017 - DZA65_RS05740 0.83 -0.1
1,179,017 - DZA65_RS05740 0.83 +0.2
1,179,017 - DZA65_RS05740 0.83 -0.7
1,179,017 - DZA65_RS05740 0.83 -0.3
1,179,017 - DZA65_RS05740 0.83 -0.2
1,179,063 + DZA65_RS05740 0.89 -0.1
1,179,076 + +1.2
1,179,105 - +0.6
1,179,123 + -1.2
1,179,123 + -0.3
1,179,173 + +0.5
1,179,214 + -0.4
1,179,215 - -1.8
1,179,237 + +1.0
1,179,237 + -0.0
1,179,237 + -0.7
1,179,237 + +0.6
1,179,238 - -0.8
1,179,238 - -0.4
1,179,238 - -1.0
1,179,238 - +1.6
1,179,269 - +0.6
1,179,296 + -0.0
1,179,341 + -0.0
1,179,342 - -1.2
1,179,342 - -0.8
1,179,357 + -2.1
1,179,357 + -0.5
1,179,377 + -0.0
1,179,428 + -0.4
1,179,431 + DZA65_RS05745 0.10 -0.2
1,179,431 + DZA65_RS05745 0.10 -1.2
1,179,724 + DZA65_RS05745 0.41 -1.8
1,180,014 + DZA65_RS05745 0.72 +0.0
1,180,014 + DZA65_RS05745 0.72 -0.9
1,180,014 + DZA65_RS05745 0.72 -0.8
1,180,015 - DZA65_RS05745 0.72 -1.2
1,180,015 - DZA65_RS05745 0.72 -0.4
1,180,017 + DZA65_RS05745 0.72 -0.5
1,180,017 + DZA65_RS05745 0.72 -1.7
1,180,018 - DZA65_RS05745 0.72 -0.5
1,180,018 - DZA65_RS05745 0.72 +1.6
1,180,018 - DZA65_RS05745 0.72 -0.6
1,180,018 - DZA65_RS05745 0.72 -1.4
1,180,018 - DZA65_RS05745 0.72 -0.8
1,180,074 + DZA65_RS05745 0.78 -0.4
1,180,164 - DZA65_RS05745 0.88 -1.4
1,180,202 + +0.6
1,180,366 + DZA65_RS05750 0.12 -1.8
1,180,366 + DZA65_RS05750 0.12 -0.8
1,180,367 - DZA65_RS05750 0.12 -1.5
1,180,367 - DZA65_RS05750 0.12 +0.2
1,180,367 - DZA65_RS05750 0.12 +0.0
1,180,485 - DZA65_RS05750 0.30 -0.0
1,180,485 - DZA65_RS05750 0.30 +0.2
1,180,495 + DZA65_RS05750 0.31 -0.9
1,180,568 + DZA65_RS05750 0.42 -0.2
1,180,622 + DZA65_RS05750 0.51 -0.6
1,180,622 + DZA65_RS05750 0.51 -1.2
1,180,622 + DZA65_RS05750 0.51 +0.1
1,180,622 + DZA65_RS05750 0.51 -0.0
1,180,623 - DZA65_RS05750 0.51 -2.6
1,180,623 - DZA65_RS05750 0.51 +0.7
1,180,623 - DZA65_RS05750 0.51 -0.0
1,180,623 - DZA65_RS05750 0.51 -0.0
1,180,623 - DZA65_RS05750 0.51 -0.8
1,180,626 + DZA65_RS05750 0.51 +0.2
1,180,626 + DZA65_RS05750 0.51 +0.2
1,180,626 + DZA65_RS05750 0.51 +1.4
1,180,627 - DZA65_RS05750 0.51 -2.8
1,180,774 + +3.2
1,180,774 + DZA65_RS05750 0.74 -0.6
1,180,774 + DZA65_RS05750 0.74 -0.4
1,180,774 + DZA65_RS05750 0.74 +1.8
1,180,774 + DZA65_RS05750 0.74 -0.5
1,180,775 - DZA65_RS05750 0.74 -2.3
1,180,775 - DZA65_RS05750 0.74 +0.6
1,180,775 - DZA65_RS05750 0.74 -0.3
1,180,775 - DZA65_RS05750 0.74 -0.6
1,180,775 - DZA65_RS05750 0.74 -0.0
1,180,780 + DZA65_RS05750 0.75 -1.4
1,180,780 + DZA65_RS05750 0.75 -0.0
1,180,780 + DZA65_RS05750 0.75 -0.8
1,180,780 + DZA65_RS05750 0.75 -0.6
1,180,780 + DZA65_RS05750 0.75 -0.3
1,180,780 + DZA65_RS05750 0.75 +1.1
1,180,780 + DZA65_RS05750 0.75 +0.6
1,180,780 + DZA65_RS05750 0.75 +0.3
1,180,780 + DZA65_RS05750 0.75 -1.8
1,180,780 + DZA65_RS05750 0.75 +0.2
1,180,781 - DZA65_RS05750 0.75 -1.9
1,180,781 - DZA65_RS05750 0.75 -1.0
1,180,781 - DZA65_RS05750 0.75 -0.4
1,180,781 - DZA65_RS05750 0.75 -0.8
1,180,781 - DZA65_RS05750 0.75 -1.0
1,180,781 - DZA65_RS05750 0.75 -1.0
1,180,781 - DZA65_RS05750 0.75 -1.4
1,180,781 - DZA65_RS05750 0.75 -0.6
1,180,781 - DZA65_RS05750 0.75 -1.1
1,180,781 - DZA65_RS05750 0.75 -0.4
1,180,781 - DZA65_RS05750 0.75 -0.0
1,180,781 - DZA65_RS05750 0.75 +0.4
1,180,807 + DZA65_RS05750 0.79 -1.0
1,180,807 + DZA65_RS05750 0.79 -1.1
1,180,807 + DZA65_RS05750 0.79 -0.0
1,180,807 + DZA65_RS05750 0.79 +0.3
1,180,808 - DZA65_RS05750 0.79 -0.0
1,180,808 - DZA65_RS05750 0.79 -0.8
1,180,808 - DZA65_RS05750 0.79 +0.1
1,180,808 - DZA65_RS05750 0.79 +1.2
1,180,810 + DZA65_RS05750 0.79 -0.1
1,180,810 + DZA65_RS05750 0.79 +1.6
1,180,810 + DZA65_RS05750 0.79 -1.6
1,180,811 - DZA65_RS05750 0.79 -0.2
1,180,811 - DZA65_RS05750 0.79 -1.2
1,180,811 - DZA65_RS05750 0.79 -0.0
1,180,811 - DZA65_RS05750 0.79 +0.6
1,180,811 - DZA65_RS05750 0.79 +0.5
1,180,811 - DZA65_RS05750 0.79 +0.3
1,180,811 - DZA65_RS05750 0.79 -0.0
1,180,811 - DZA65_RS05750 0.79 -0.6
1,180,839 + DZA65_RS05750 0.84 -0.8
1,180,839 + DZA65_RS05750 0.84 -1.0
1,180,938 + -0.0
1,180,939 - +1.6
1,181,013 + +1.2
1,181,013 + +0.5
1,181,013 + +0.2
1,181,014 - -0.0
1,181,014 - +0.2
1,181,014 - -0.9
1,181,014 - -0.8
1,181,051 + -0.9
1,181,051 + +0.6
1,181,051 + -0.8
1,181,051 + -2.5
1,181,051 + -0.2
1,181,052 - -0.9
1,181,052 - -0.2
1,181,052 - -0.2
1,181,052 - -0.4
1,181,168 + -1.6
1,181,168 + -0.9
1,181,169 - +0.2
1,181,169 - +1.2
1,181,204 + DZA65_RS05755 0.11 +0.4
1,181,269 + DZA65_RS05755 0.16 -0.5
1,181,269 + DZA65_RS05755 0.16 -0.4
1,181,270 - DZA65_RS05755 0.16 +0.6
1,181,270 - DZA65_RS05755 0.16 -0.2
1,181,270 - DZA65_RS05755 0.16 -0.1

Or see this region's nucleotide sequence