Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS05375

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,105,013	+		DZA65_RS05365	0.74	-1.0
1,105,109	+		DZA65_RS05365	0.83	+0.6
1,105,110	-		DZA65_RS05365	0.83	-0.0
1,105,176	-				+0.8
1,105,176	-				+0.4
1,105,177	+				-0.3
1,105,177	+				+0.3
1,105,177	+				-1.4
1,105,177	+				+0.6
1,105,177	+				+0.7
1,105,178	-				-2.3
1,105,178	-				-0.2
1,105,178	-				-1.0
1,105,184	+				+0.5
1,105,184	+				+0.6
1,105,185	-				-1.0
1,105,252	+				-0.6
1,105,252	+				+0.3
1,105,252	+				-0.5
1,105,253	-				-0.7
1,105,253	-				-1.0
1,105,264	-				-1.7
1,105,290	+				-0.2
1,105,290	+				-0.3
1,105,290	+				-0.0
1,105,290	+				-0.4
1,105,290	+				-0.2
1,105,291	-				-0.2
1,105,291	-				-0.7
1,105,291	-				-1.8
1,105,291	-				-1.0
1,105,291	-				-0.7
1,105,291	-				+0.6
1,105,291	-				-0.9
1,105,291	-				-0.6
1,105,291	-				-0.7
1,105,291	-				-1.4
1,105,296	+				+0.5
1,105,296	+				-0.7
1,105,297	-				-0.0
1,105,297	-				-1.4
1,105,301	+				+0.6
1,105,301	+				+0.6
1,105,302	-				-0.7
1,105,302	-				+0.6
1,105,376	+		DZA65_RS05370	0.17	-0.7
1,105,377	-		DZA65_RS05370	0.17	-0.0
1,105,377	-		DZA65_RS05370	0.17	-0.2
1,105,465	+		DZA65_RS05370	0.37	+0.6
1,105,465	+		DZA65_RS05370	0.37	-2.7
1,105,465	+		DZA65_RS05370	0.37	+0.5
1,105,465	+		DZA65_RS05370	0.37	-1.4
1,105,466	-		DZA65_RS05370	0.37	+1.1
1,105,466	-		DZA65_RS05370	0.37	+0.5
1,105,521	-		DZA65_RS05370	0.49	+0.3
1,105,521	-		DZA65_RS05370	0.49	-1.1
1,105,550	+		DZA65_RS05370	0.56	+0.9
1,105,550	+		DZA65_RS05370	0.56	+0.3
1,105,610	+		DZA65_RS05370	0.69	-2.4
1,105,625	-		DZA65_RS05370	0.73	-0.4
1,105,638	+		DZA65_RS05370	0.76	-2.0
1,105,639	-		DZA65_RS05370	0.76	-1.2
1,105,639	-		DZA65_RS05370	0.76	-1.7
1,105,639	-		DZA65_RS05370	0.76	-0.8
1,105,639	-		DZA65_RS05370	0.76	-0.7
1,105,667	+		DZA65_RS05370	0.82	+0.8
1,105,667	+		DZA65_RS05370	0.82	-1.9
1,105,667	+		DZA65_RS05370	0.82	+0.2
1,105,668	-		DZA65_RS05370	0.82	-1.2
1,105,668	-		DZA65_RS05370	0.82	+0.3
1,105,668	-				+0.6
1,105,677	+		DZA65_RS05370	0.84	-0.0
1,105,772	-				-0.3
1,105,772	-				+0.7
1,105,788	+				-1.0
1,105,789	-				+1.3
1,105,831	+				+0.3
1,105,832	-				+0.3
1,105,835	+				+1.4
1,105,835	+				-2.4
1,105,835	+				+0.6
1,105,835	+				-0.6
1,105,836	-				-0.6
1,105,836	-				-0.4
1,105,836	-				-0.3
1,105,849	+				-0.7
1,105,850	-				+1.6
1,105,850	-				-0.2
1,105,989	-				-1.7
1,105,989	-				-0.4
1,106,006	+				-1.1
1,106,006	+				-1.7
1,106,006	+				+0.3
1,106,006	+				-1.2
1,106,006	+				-0.6
1,106,007	-				+0.4
1,106,007	-				-0.6
1,106,007	-				+0.6
1,106,007	-				+0.8
1,106,007	-				-0.6
1,106,007	-				+1.2
1,106,011	-				-0.5
1,106,011	-				-1.4
1,106,011	-				-0.0
1,106,039	+				+0.9
1,106,040	-				-0.2
1,106,040	-				-0.7
1,106,040	-				-0.6
1,106,351	+		DZA65_RS05375	0.45	-2.4
1,106,351	+		DZA65_RS05375	0.45	-0.2
1,106,351	+		DZA65_RS05375	0.45	-1.4
1,106,352	-		DZA65_RS05375	0.46	-1.4
1,106,352	-		DZA65_RS05375	0.46	+1.0
1,106,352	-		DZA65_RS05375	0.46	-0.9
1,106,352	-		DZA65_RS05375	0.46	-1.6
1,106,352	-		DZA65_RS05375	0.46	-0.4
1,106,352	-		DZA65_RS05375	0.46	+0.9
1,106,352	-		DZA65_RS05375	0.46	-0.8
1,106,352	-		DZA65_RS05375	0.46	-2.1
1,106,470	+		DZA65_RS05375	0.59	+0.2
1,106,558	-		DZA65_RS05375	0.70	-0.2
1,106,615	+		DZA65_RS05375	0.76	+0.4
1,106,616	-		DZA65_RS05375	0.77	-0.0
1,106,616	-		DZA65_RS05375	0.77	-0.4
1,107,226	+				-0.4
1,107,226	+				-0.0
1,107,226	+				-2.0
1,107,226	+				-0.4
1,107,226	+				+0.6
1,107,226	+				-0.2
1,107,262	+				-0.4
1,107,262	+				-0.4
1,107,320	+				-0.6
1,107,320	+				+1.1
1,107,321	-				-0.0
1,107,448	+		DZA65_RS05385	0.16	+0.3
1,107,448	+		DZA65_RS05385	0.16	-0.0
1,107,448	+		DZA65_RS05385	0.16	+1.1
1,107,448	+		DZA65_RS05385	0.16	-0.0
1,107,448	+		DZA65_RS05385	0.16	-0.1
1,107,448	+		DZA65_RS05385	0.16	-0.4
1,107,449	-		DZA65_RS05385	0.17	-2.2
1,107,449	-		DZA65_RS05385	0.17	+0.7
1,107,449	-		DZA65_RS05385	0.17	-1.3
1,107,449	-		DZA65_RS05385	0.17	-0.5
1,107,449	-		DZA65_RS05385	0.17	-0.2
1,107,449	-		DZA65_RS05385	0.17	-0.2
1,107,460	-		DZA65_RS05385	0.17	-0.0
1,107,675	+		DZA65_RS05385	0.35	-0.1
1,107,676	-		DZA65_RS05385	0.35	-2.8
1,107,676	-		DZA65_RS05385	0.35	+0.2
1,107,676	-		DZA65_RS05385	0.35	+2.0
1,107,758	+		DZA65_RS05385	0.42	-0.7
1,107,786	-		DZA65_RS05385	0.44	-0.5
1,107,809	+		DZA65_RS05385	0.46	-0.0
1,107,809	+		DZA65_RS05385	0.46	-0.6
1,107,810	-		DZA65_RS05385	0.46	-0.3
1,107,810	-		DZA65_RS05385	0.46	+1.2
1,107,810	-		DZA65_RS05385	0.46	+0.3
1,107,810	-		DZA65_RS05385	0.46	-1.7
1,107,810	-		DZA65_RS05385	0.46	+1.0