Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS04940

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,022,868	-		DZA65_RS04930	0.65	-2.7
1,023,037	+		DZA65_RS04930	0.81	-0.9
1,023,037	+				+0.6
1,023,037	+		DZA65_RS04930	0.81	+0.4
1,023,038	-		DZA65_RS04930	0.81	-0.2
1,023,038	-		DZA65_RS04930	0.81	-0.3
1,023,038	-		DZA65_RS04930	0.81	-0.6
1,023,038	-		DZA65_RS04930	0.81	-1.0
1,023,038	-		DZA65_RS04930	0.81	-0.7
1,023,038	-		DZA65_RS04930	0.81	-0.7
1,023,078	+		DZA65_RS04930	0.85	+0.6
1,023,088	+		DZA65_RS04930	0.86	-0.2
1,023,088	+		DZA65_RS04930	0.86	+0.2
1,023,088	+		DZA65_RS04930	0.86	-0.5
1,023,088	+		DZA65_RS04930	0.86	+1.3
1,023,088	+		DZA65_RS04930	0.86	-2.5
1,023,088	+		DZA65_RS04930	0.86	-0.6
1,023,088	+		DZA65_RS04930	0.86	-1.7
1,023,089	-		DZA65_RS04930	0.86	+1.2
1,023,089	-		DZA65_RS04930	0.86	-1.1
1,023,089	-		DZA65_RS04930	0.86	-0.0
1,023,089	-		DZA65_RS04930	0.86	+0.6
1,023,089	-		DZA65_RS04930	0.86	-0.0
1,023,089	-		DZA65_RS04930	0.86	-0.7
1,023,089	-		DZA65_RS04930	0.86	-0.9
1,023,089	-		DZA65_RS04930	0.86	-0.7
1,023,089	-		DZA65_RS04930	0.86	-0.0
1,023,170	+				-1.7
1,023,185	+				-0.5
1,023,186	-				-0.2
1,023,230	+				-0.4
1,023,230	+				-0.9
1,023,231	-				-0.6
1,023,248	+				-0.5
1,023,248	+				-0.8
1,023,248	+				+0.8
1,023,248	+				-0.7
1,023,248	+				-0.3
1,023,249	-				-2.1
1,023,249	-				+1.6
1,023,249	-				-0.0
1,023,249	-				+0.8
1,023,249	-				+0.3
1,023,252	+				-0.5
1,023,252	+				-0.2
1,023,252	+				-1.2
1,023,252	+				-0.6
1,023,252	+				-1.0
1,023,252	+				+0.3
1,023,252	+				-2.0
1,023,252	+				-1.2
1,023,252	+				-0.5
1,023,253	-				-0.6
1,023,253	-				-0.0
1,023,253	-				-0.2
1,023,253	-				-1.1
1,023,253	-				+0.6
1,023,253	-				-0.8
1,023,253	-				-1.0
1,023,253	-				-1.0
1,023,253	-				+0.2
1,023,253	-				-1.2
1,023,253	-				-0.2
1,023,253	-				+1.4
1,023,253	-				+0.4
1,023,253	-				+0.4
1,023,320	+		DZA65_RS04935	0.12	-0.3
1,023,320	+		DZA65_RS04935	0.12	-0.4
1,023,320	+		DZA65_RS04935	0.12	-1.7
1,023,321	-		DZA65_RS04935	0.12	+1.0
1,023,321	-		DZA65_RS04935	0.12	-0.6
1,023,321	-		DZA65_RS04935	0.12	-0.7
1,023,343	+				+1.0
1,023,343	+		DZA65_RS04935	0.16	-0.0
1,023,343	+		DZA65_RS04935	0.16	-0.7
1,023,343	+		DZA65_RS04935	0.16	+1.6
1,023,343	+		DZA65_RS04935	0.16	-0.2
1,023,343	+		DZA65_RS04935	0.16	-0.7
1,023,344	-		DZA65_RS04935	0.16	+0.2
1,023,344	-		DZA65_RS04935	0.16	-1.0
1,023,344	-		DZA65_RS04935	0.16	-0.8
1,023,344	-		DZA65_RS04935	0.16	-1.2
1,023,375	+		DZA65_RS04935	0.21	-2.1
1,023,454	+		DZA65_RS04935	0.35	-0.9
1,023,462	+		DZA65_RS04935	0.36	-0.4
1,023,463	-		DZA65_RS04935	0.36	+1.2
1,023,463	-		DZA65_RS04935	0.36	-1.5
1,023,471	+		DZA65_RS04935	0.38	+0.6
1,023,472	-		DZA65_RS04935	0.38	+0.3
1,023,572	-		DZA65_RS04935	0.55	-0.4
1,023,606	+		DZA65_RS04935	0.61	-1.6
1,023,616	-		DZA65_RS04935	0.63	+0.3
1,023,616	-		DZA65_RS04935	0.63	-0.7
1,023,638	-		DZA65_RS04935	0.66	-0.6
1,023,638	-		DZA65_RS04935	0.66	-0.6
1,023,663	+		DZA65_RS04935	0.71	-0.4
1,023,663	+		DZA65_RS04935	0.71	+0.6
1,023,663	+		DZA65_RS04935	0.71	-1.4
1,023,663	+		DZA65_RS04935	0.71	-0.6
1,023,664	-		DZA65_RS04935	0.71	+0.2
1,023,664	-		DZA65_RS04935	0.71	-1.5
1,023,664	-		DZA65_RS04935	0.71	+1.3
1,023,664	-		DZA65_RS04935	0.71	-0.0
1,023,664	-		DZA65_RS04935	0.71	-0.9
1,023,664	-		DZA65_RS04935	0.71	-1.2
1,023,708	+		DZA65_RS04935	0.79	-0.0
1,023,784	-				-0.9
1,023,801	+				-1.7
1,023,801	+				-1.4
1,023,801	+				-0.6
1,023,802	-				+0.4
1,023,817	-				+1.8
1,023,822	+				-0.8
1,023,843	+				-1.2
1,023,843	+				-1.9
1,023,844	-				-0.5
1,023,878	-				+0.3
1,023,924	+		DZA65_RS04940	0.18	-2.0
1,023,925	-		DZA65_RS04940	0.18	-1.4
1,023,925	-		DZA65_RS04940	0.18	-0.0
1,023,996	-		DZA65_RS04940	0.33	-2.3
1,024,038	+		DZA65_RS04940	0.42	-1.2
1,024,134	-		DZA65_RS04940	0.61	-1.0
1,024,134	-		DZA65_RS04940	0.61	-0.2
1,024,134	-		DZA65_RS04940	0.61	-1.1
1,024,139	-		DZA65_RS04940	0.63	+0.4
1,024,139	-		DZA65_RS04940	0.63	+0.4
1,024,139	-		DZA65_RS04940	0.63	-1.3
1,024,209	+		DZA65_RS04940	0.77	-1.0
1,024,209	+		DZA65_RS04940	0.77	-0.7
1,024,209	+		DZA65_RS04940	0.77	-0.2
1,024,210	-		DZA65_RS04940	0.77	-0.9
1,024,210	-		DZA65_RS04940	0.77	-0.0
1,024,210	-		DZA65_RS04940	0.77	-0.8
1,024,210	-		DZA65_RS04940	0.77	-1.0
1,024,210	-		DZA65_RS04940	0.77	-0.0
1,024,269	+		DZA65_RS04940	0.89	+0.4
1,024,269	+		DZA65_RS04940	0.89	-1.2
1,024,269	+		DZA65_RS04940	0.89	-0.6
1,024,269	+		DZA65_RS04940	0.89	-0.0
1,024,270	-		DZA65_RS04940	0.90	-1.9
1,024,270	-		DZA65_RS04940	0.90	-0.1
1,024,270	-		DZA65_RS04940	0.90	-2.1
1,024,270	-		DZA65_RS04940	0.90	+0.6
1,024,312	+				-1.2
1,024,312	+				+0.2
1,024,312	+				+0.2
1,024,313	-				-0.7
1,024,313	-				+0.3
1,024,412	+				+0.6
1,024,412	+				+0.9
1,024,412	+				+0.6
1,024,412	+				+1.6
1,024,412	+				-1.0
1,024,412	+				-0.2
1,024,413	-				+1.3
1,024,413	-				+0.8
1,024,469	+		DZA65_RS04945	0.19	+1.2
1,024,479	+		DZA65_RS04945	0.21	-0.4
1,024,479	+		DZA65_RS04945	0.21	-0.9
1,024,479	+		DZA65_RS04945	0.21	+0.1
1,024,479	+		DZA65_RS04945	0.21	-0.4
1,024,479	+		DZA65_RS04945	0.21	-1.9
1,024,480	-		DZA65_RS04945	0.21	-0.6
1,024,491	+		DZA65_RS04945	0.22	+0.8
1,024,491	+		DZA65_RS04945	0.22	-1.4
1,024,570	+		DZA65_RS04945	0.35	-0.6
1,024,570	+		DZA65_RS04945	0.35	+0.6
1,024,570	+		DZA65_RS04945	0.35	-0.3
1,024,570	+		DZA65_RS04945	0.35	-0.4
1,024,571	-		DZA65_RS04945	0.35	+0.0
1,024,571	-		DZA65_RS04945	0.35	+0.3
1,024,571	-		DZA65_RS04945	0.35	-1.0
1,024,615	+		DZA65_RS04945	0.43	-0.4
1,024,716	+		DZA65_RS04945	0.59	-0.7
1,024,740	-		DZA65_RS04945	0.63	-0.4
1,024,740	-		DZA65_RS04945	0.63	-0.7
1,024,946	+				+0.6
1,024,946	+				-0.3
1,024,946	+				-0.6
1,024,947	-				-1.6
1,024,947	-				-3.2
1,024,947	-				+0.8
1,024,947	-				-1.0
1,024,957	-				+1.2
1,025,013	+				-0.2
1,025,014	-				+1.6
1,025,014	-				-0.1
1,025,016	+				-0.3
1,025,016	+				+0.7
1,025,016	+				-0.0
1,025,016	+				-0.4
1,025,016	+				-0.9
1,025,016	+				-0.9
1,025,016	+				-0.1
1,025,017	-				-0.8
1,025,041	-				+0.2
1,025,055	-				-0.4
1,025,070	+				+0.4
1,025,070	+				-1.0
1,025,070	+				-0.9
1,025,070	+				+1.3
1,025,071	-				-1.1
1,025,071	-				-1.1
1,025,071	-				+1.6
1,025,071	-				-1.1
1,025,071	-				+0.8
1,025,071	-				-1.4
1,025,071	-				-0.4
1,025,086	+				-0.6
1,025,086	+				-0.0
1,025,086	+				-1.0
1,025,086	+				+1.3
1,025,087	-				+1.6
1,025,111	+		DZA65_RS04950	0.11	-0.6
1,025,148	-		DZA65_RS04950	0.14	-2.1
1,025,155	+		DZA65_RS04950	0.14	+1.1
1,025,156	-		DZA65_RS04950	0.14	-1.0
1,025,156	-		DZA65_RS04950	0.14	-0.1
1,025,170	+		DZA65_RS04950	0.16	-0.7
1,025,170	+		DZA65_RS04950	0.16	-1.0
1,025,170	+		DZA65_RS04950	0.16	+0.3
1,025,171	-		DZA65_RS04950	0.16	-1.0
1,025,171	-		DZA65_RS04950	0.16	-0.2
1,025,171	-		DZA65_RS04950	0.16	+0.2
1,025,171	-		DZA65_RS04950	0.16	-1.2
1,025,271	+		DZA65_RS04950	0.24	+0.8
1,025,271	+		DZA65_RS04950	0.24	-1.0
1,025,272	-		DZA65_RS04950	0.24	-2.1
1,025,272	-		DZA65_RS04950	0.24	-1.5
1,025,286	+		DZA65_RS04950	0.25	-1.1
1,025,286	+		DZA65_RS04950	0.25	-1.6
1,025,286	+		DZA65_RS04950	0.25	-1.2
1,025,286	+		DZA65_RS04950	0.25	-0.9
1,025,286	+		DZA65_RS04950	0.25	-1.7
1,025,286	+		DZA65_RS04950	0.25	-0.4
1,025,286	+		DZA65_RS04950	0.25	-0.9
1,025,286	+		DZA65_RS04950	0.25	-2.2
1,025,286	+		DZA65_RS04950	0.25	+0.9
1,025,287	-		DZA65_RS04950	0.25	-1.7
1,025,287	-		DZA65_RS04950	0.25	+2.1
1,025,287	-		DZA65_RS04950	0.25	+0.4
1,025,290	+		DZA65_RS04950	0.25	+0.2
1,025,290	+		DZA65_RS04950	0.25	+0.1