Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS04885

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,011,196	+		DZA65_RS04880	0.35	-1.2
1,011,196	+		DZA65_RS04880	0.35	+1.4
1,011,196	+		DZA65_RS04880	0.35	-1.2
1,011,196	+		DZA65_RS04880	0.35	-1.0
1,011,197	-		DZA65_RS04880	0.35	-1.0
1,011,197	-		DZA65_RS04880	0.35	-1.5
1,011,197	-		DZA65_RS04880	0.35	-0.8
1,011,197	-		DZA65_RS04880	0.35	-0.0
1,011,240	+		DZA65_RS04880	0.44	-2.0
1,011,241	-		DZA65_RS04880	0.45	-0.9
1,011,241	-		DZA65_RS04880	0.45	-1.1
1,011,244	+		DZA65_RS04880	0.45	+0.9
1,011,244	+		DZA65_RS04880	0.45	-0.0
1,011,245	-		DZA65_RS04880	0.45	-0.2
1,011,245	-				+0.6
1,011,260	+		DZA65_RS04880	0.48	+0.6
1,011,260	+		DZA65_RS04880	0.48	-2.2
1,011,260	+		DZA65_RS04880	0.48	-0.7
1,011,260	+		DZA65_RS04880	0.48	-0.5
1,011,260	+		DZA65_RS04880	0.48	-0.3
1,011,261	-		DZA65_RS04880	0.49	+0.1
1,011,261	-		DZA65_RS04880	0.49	-0.1
1,011,261	-		DZA65_RS04880	0.49	-1.9
1,011,261	-		DZA65_RS04880	0.49	-0.7
1,011,261	-				+1.6
1,011,261	-		DZA65_RS04880	0.49	-0.6
1,011,261	-		DZA65_RS04880	0.49	-0.0
1,011,262	+		DZA65_RS04880	0.49	-0.3
1,011,262	+		DZA65_RS04880	0.49	+0.8
1,011,301	+		DZA65_RS04880	0.57	+0.1
1,011,353	-		DZA65_RS04880	0.68	+0.6
1,011,353	-		DZA65_RS04880	0.68	+0.1
1,011,565	-				-2.2
1,011,597	+				-0.4
1,011,597	+				-1.1
1,011,597	+				-0.9
1,011,597	+				+0.9
1,011,598	-				-0.5
1,011,610	+				-1.0
1,011,645	+				+1.0
1,011,645	+				-1.0
1,011,645	+				-0.0
1,011,645	+				+0.0
1,011,645	+				+0.6
1,011,645	+				-0.4
1,011,645	+				-1.1
1,011,645	+				-1.5
1,011,645	+				-2.2
1,011,646	-				-1.1
1,011,646	-				-1.1
1,011,646	-				-0.4
1,011,646	-				+0.1
1,011,646	-				-0.8
1,011,646	-				-0.4
1,011,646	-				+2.2
1,011,646	-				-0.6
1,011,679	-				+1.6
1,011,679	-				-0.4
1,011,683	+				+0.1
1,011,683	+				+0.7
1,011,683	+				+0.4
1,011,684	-				-1.4
1,011,739	-				-0.5
1,011,781	+				-0.4
1,011,782	-				+0.6
1,011,791	-				-2.7
1,011,800	+				-0.4
1,011,800	+				-0.4
1,011,838	+				-1.8
1,011,905	+				-1.1
1,011,923	+				-0.0
1,011,940	+				-1.3
1,011,941	-				-0.0
1,011,971	-				-0.0
1,011,982	+				-1.6
1,012,028	-				-2.0
1,012,059	+				-1.9
1,012,094	-				-1.0
1,012,127	+				-1.0
1,012,128	-				-0.0
1,012,128	-				-1.4
1,012,158	+				+1.9
1,012,159	-				-0.2
1,012,160	+				+0.1
1,012,161	-				-0.5
1,012,175	+				-2.6
1,012,176	-				-0.9
1,012,183	+				-0.9
1,012,184	-				-0.2
1,012,203	+				-1.3
1,012,360	+		DZA65_RS04885	0.13	+1.6
1,012,361	-		DZA65_RS04885	0.13	+0.6
1,012,365	-		DZA65_RS04885	0.13	+0.7
1,012,391	+		DZA65_RS04885	0.14	+0.8
1,012,392	-		DZA65_RS04885	0.14	-1.5
1,012,392	-		DZA65_RS04885	0.14	-2.4
1,012,392	-		DZA65_RS04885	0.14	+1.6
1,012,395	+		DZA65_RS04885	0.14	+0.6
1,012,434	-		DZA65_RS04885	0.17	-0.7
1,012,438	-		DZA65_RS04885	0.17	+1.8
1,012,456	-		DZA65_RS04885	0.18	-0.1
1,012,473	-		DZA65_RS04885	0.19	+0.8
1,012,498	+		DZA65_RS04885	0.20	-0.3
1,012,499	-		DZA65_RS04885	0.20	+0.5
1,012,759	-		DZA65_RS04885	0.34	+1.1
1,012,779	+		DZA65_RS04885	0.35	-0.6
1,012,782	+		DZA65_RS04885	0.35	-1.3
1,012,782	+		DZA65_RS04885	0.35	-1.2
1,012,782	+		DZA65_RS04885	0.35	-1.2
1,012,783	-		DZA65_RS04885	0.35	+0.3
1,012,792	-		DZA65_RS04885	0.36	+0.5
1,012,806	-		DZA65_RS04885	0.36	-1.4
1,012,806	-		DZA65_RS04885	0.36	+0.6
1,012,889	-		DZA65_RS04885	0.41	-0.0
1,012,902	-		DZA65_RS04885	0.41	-0.6
1,012,902	-		DZA65_RS04885	0.41	-0.1
1,012,923	+		DZA65_RS04885	0.43	-0.2
1,012,924	-		DZA65_RS04885	0.43	-0.6
1,012,924	-		DZA65_RS04885	0.43	-1.4
1,013,040	+		DZA65_RS04885	0.49	-1.1
1,013,053	-		DZA65_RS04885	0.49	-0.2
1,013,111	+		DZA65_RS04885	0.53	+0.1
1,013,118	+		DZA65_RS04885	0.53	-1.5
1,013,250	-		DZA65_RS04885	0.60	+0.6
1,013,295	+		DZA65_RS04885	0.62	-0.4
1,013,295	+		DZA65_RS04885	0.62	-0.4
1,013,298	+		DZA65_RS04885	0.62	-0.7
1,013,311	-		DZA65_RS04885	0.63	-1.4
1,013,411	-		DZA65_RS04885	0.68	-2.1
1,013,427	+		DZA65_RS04885	0.69	-0.6
1,013,428	-				+0.6
1,013,428	-		DZA65_RS04885	0.69	-1.4
1,013,428	-		DZA65_RS04885	0.69	-0.8
1,013,430	+		DZA65_RS04885	0.69	-0.4
1,013,430	+		DZA65_RS04885	0.69	-1.9
1,013,431	-		DZA65_RS04885	0.70	-0.4
1,013,486	-		DZA65_RS04885	0.72	-1.0
1,013,518	+		DZA65_RS04885	0.74	+0.4
1,013,518	+		DZA65_RS04885	0.74	-0.7
1,013,519	-		DZA65_RS04885	0.74	-0.4
1,013,519	-		DZA65_RS04885	0.74	+0.3
1,013,519	-		DZA65_RS04885	0.74	-0.6
1,013,519	-		DZA65_RS04885	0.74	+2.2
1,013,595	+		DZA65_RS04885	0.78	-1.6
1,013,653	+		DZA65_RS04885	0.81	-1.0
1,013,654	-		DZA65_RS04885	0.81	-0.7
1,013,684	+		DZA65_RS04885	0.83	-0.4
1,013,684	+		DZA65_RS04885	0.83	-0.2
1,013,685	-		DZA65_RS04885	0.83	+0.9
1,013,685	-		DZA65_RS04885	0.83	+0.2
1,013,686	+		DZA65_RS04885	0.83	+1.1
1,013,699	+		DZA65_RS04885	0.84	-0.6
1,013,703	+		DZA65_RS04885	0.84	-0.4
1,013,703	+		DZA65_RS04885	0.84	-0.7
1,013,747	+		DZA65_RS04885	0.86	-0.4
1,013,747	+		DZA65_RS04885	0.86	+0.3
1,013,747	+		DZA65_RS04885	0.86	+1.9
1,013,747	+		DZA65_RS04885	0.86	-0.4
1,013,748	-		DZA65_RS04885	0.86	+1.2
1,013,748	-		DZA65_RS04885	0.86	-0.9
1,013,764	-		DZA65_RS04885	0.87	-0.0
1,013,768	-				-0.0
1,013,768	-		DZA65_RS04885	0.87	-0.0
1,013,775	+		DZA65_RS04885	0.88	+0.2
1,013,886	+				+0.3
1,013,893	-				+2.0
1,013,893	-				-1.2
1,013,893	-				-0.0
1,013,919	+				+0.6
1,013,934	-				-0.7
1,013,934	-				-2.0
1,014,025	+				+0.5
1,014,025	+				+0.3
1,014,026	-				-1.5
1,014,083	+				-0.7
1,014,083	+				+0.5
1,014,084	-				-0.0
1,014,084	-				-0.6
1,014,134	-				-1.3
1,014,146	-				-0.4
1,014,155	+				+1.6
1,014,241	+				+0.4
1,014,242	-				+0.4
1,014,244	+				-1.9
1,014,244	+				-0.4
1,014,244	+				-0.3
1,014,244	+				-0.3
1,014,245	-				+0.6
1,014,245	-				-1.0
1,014,245	-				-3.0
1,014,245	-				-0.4
1,014,245	-				-1.8
1,014,256	+				-0.0
1,014,274	+				-2.2
1,014,277	+				-0.0
1,014,278	-				-1.7
1,014,315	-		DZA65_RS04890	0.16	-2.3
1,014,317	+		DZA65_RS04890	0.16	+1.6
1,014,318	-		DZA65_RS04890	0.16	-0.7
1,014,319	+		DZA65_RS04890	0.16	+0.1
1,014,319	+		DZA65_RS04890	0.16	-0.2
1,014,320	-		DZA65_RS04890	0.17	-1.9
1,014,329	+		DZA65_RS04890	0.18	-0.3
1,014,330	-		DZA65_RS04890	0.19	-0.2
1,014,355	+		DZA65_RS04890	0.24	+0.8
1,014,355	+		DZA65_RS04890	0.24	-1.1
1,014,356	-		DZA65_RS04890	0.24	+0.1
1,014,356	-		DZA65_RS04890	0.24	+0.6
1,014,367	+		DZA65_RS04890	0.26	-0.7
1,014,378	+		DZA65_RS04890	0.28	-2.0
1,014,466	+		DZA65_RS04890	0.46	-0.2
1,014,484	-		DZA65_RS04890	0.49	+0.1
1,014,488	+		DZA65_RS04890	0.50	-0.9
1,014,488	+		DZA65_RS04890	0.50	-0.0
1,014,488	+		DZA65_RS04890	0.50	-1.4
1,014,489	-		DZA65_RS04890	0.50	-0.6
1,014,489	-		DZA65_RS04890	0.50	+0.2
1,014,489	-		DZA65_RS04890	0.50	+1.3
1,014,489	-		DZA65_RS04890	0.50	-1.0
1,014,498	-		DZA65_RS04890	0.52	-1.4
1,014,498	-		DZA65_RS04890	0.52	-0.9
1,014,535	+		DZA65_RS04890	0.59	-1.2
1,014,535	+		DZA65_RS04890	0.59	-0.1
1,014,535	+		DZA65_RS04890	0.59	-0.7
1,014,535	+		DZA65_RS04890	0.59	+0.6
1,014,536	-		DZA65_RS04890	0.60	+0.3
1,014,536	-		DZA65_RS04890	0.60	+0.6
1,014,536	-		DZA65_RS04890	0.60	-0.0
1,014,536	-		DZA65_RS04890	0.60	-0.0
1,014,556	+		DZA65_RS04890	0.63	-1.4
1,014,556	+		DZA65_RS04890	0.63	-1.0
1,014,560	-		DZA65_RS04890	0.64	+0.6
1,014,584	-		DZA65_RS04890	0.69	-0.4
1,014,608	-		DZA65_RS04890	0.74	-1.5
1,014,613	+		DZA65_RS04890	0.75	-2.0
1,014,614	-		DZA65_RS04890	0.75	-0.7
1,014,614	-		DZA65_RS04890	0.75	+0.3
1,014,614	-		DZA65_RS04890	0.75	-0.9
1,014,614	-		DZA65_RS04890	0.75	-0.2
1,014,616	+		DZA65_RS04890	0.75	-0.2
1,014,616	+		DZA65_RS04890	0.75	+0.1
1,014,616	+		DZA65_RS04890	0.75	+0.6
1,014,617	-		DZA65_RS04890	0.76	-0.6
1,014,617	-		DZA65_RS04890	0.76	-1.1
1,014,617	-		DZA65_RS04890	0.76	-1.4
1,014,618	+		DZA65_RS04890	0.76	-2.3
1,014,618	+		DZA65_RS04890	0.76	-0.0
1,014,619	-		DZA65_RS04890	0.76	-1.2
1,014,619	-		DZA65_RS04890	0.76	-2.4
1,014,619	-		DZA65_RS04890	0.76	-0.2
1,014,676	+		DZA65_RS04890	0.87	-0.0
1,014,676	+		DZA65_RS04890	0.87	+1.3
1,014,677	-		DZA65_RS04890	0.88	+1.6
1,014,677	-		DZA65_RS04890	0.88	-0.5
1,014,677	-		DZA65_RS04890	0.88	+0.9
1,014,853	+				+0.6
1,014,853	+				-0.0
1,014,854	-				-0.6
1,014,854	-				-0.9
1,014,877	-				-2.0
1,014,877	-				-0.6
1,014,877	-				+0.0
1,014,877	-				-0.7
1,014,877	-				-1.6
1,014,877	-				-0.3
1,014,877	-				-0.8
1,014,877	-				-0.7
1,014,877	-				-1.3
1,014,879	-				-2.5
1,014,879	-				-1.4
1,014,879	-				+0.2
1,014,879	-				+0.6
1,014,879	-				+0.1
1,014,879	-				-0.3
1,014,879	-				-1.0