Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS04710 and DZA65_RS04715 are separated by 283 nucleotides DZA65_RS04715 and DZA65_RS04720 are separated by 2 nucleotides DZA65_RS04720 and DZA65_RS04725 are separated by 58 nucleotides DZA65_RS04725 and DZA65_RS04730 are separated by 107 nucleotides
DZA65_RS04710: DZA65_RS04710 - IS110 family transposase, at 980,108 to 981,111
_RS04710
DZA65_RS04715: DZA65_RS04715 - type II toxin-antitoxin system toxin CcdB, at 981,395 to 981,700
_RS04715
DZA65_RS04720: DZA65_RS04720 - type II toxin-antitoxin system antitoxin CcdA, at 981,703 to 981,921
_RS04720
DZA65_RS04725: DZA65_RS04725 - DUF4102 domain-containing protein, at 981,980 to 982,426
_RS04725
DZA65_RS04730: DZA65_RS04730 - hypothetical protein, at 982,534 to 982,716
_RS04730
Position (kb) 981
982 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 981.022 kb on + strand at 981.026 kb on + strand at 981.026 kb on + strand at 981.026 kb on + strand at 981.026 kb on + strand at 981.072 kb on - strand at 981.072 kb on - strand at 981.072 kb on - strand at 981.072 kb on - strand at 981.072 kb on - strand at 981.072 kb on - strand at 981.072 kb on - strand at 981.072 kb on - strand at 981.200 kb on + strand at 981.204 kb on + strand at 981.204 kb on + strand at 981.217 kb on + strand at 981.218 kb on - strand at 981.226 kb on + strand at 981.231 kb on + strand at 981.231 kb on + strand at 981.231 kb on + strand at 981.232 kb on - strand at 981.234 kb on + strand at 981.234 kb on + strand at 981.234 kb on + strand at 981.234 kb on + strand at 981.235 kb on - strand at 981.287 kb on + strand at 981.287 kb on + strand at 981.287 kb on + strand at 981.287 kb on + strand at 981.287 kb on + strand at 981.287 kb on + strand at 981.287 kb on + strand at 981.287 kb on + strand at 981.287 kb on + strand at 981.287 kb on + strand at 981.288 kb on - strand at 981.288 kb on - strand at 981.288 kb on - strand at 981.288 kb on - strand at 981.288 kb on - strand at 981.288 kb on - strand at 981.288 kb on - strand at 981.288 kb on - strand at 981.288 kb on - strand at 981.291 kb on + strand at 981.320 kb on - strand at 981.344 kb on + strand at 981.344 kb on + strand at 981.345 kb on - strand at 981.345 kb on - strand at 981.348 kb on + strand at 981.348 kb on + strand at 981.348 kb on + strand at 981.349 kb on - strand at 981.349 kb on - strand at 981.349 kb on - strand at 981.412 kb on + strand at 981.412 kb on + strand at 981.413 kb on - strand at 981.413 kb on - strand at 981.418 kb on + strand at 981.418 kb on + strand at 981.418 kb on + strand at 981.418 kb on + strand at 981.418 kb on + strand at 981.418 kb on + strand at 981.418 kb on + strand at 981.418 kb on + strand at 981.418 kb on + strand at 981.419 kb on - strand at 981.419 kb on - strand at 981.419 kb on - strand at 981.419 kb on - strand at 981.419 kb on - strand at 981.419 kb on - strand at 981.421 kb on + strand at 981.421 kb on + strand at 981.421 kb on + strand at 981.421 kb on + strand at 981.422 kb on - strand at 981.422 kb on - strand at 981.422 kb on - strand at 981.422 kb on - strand at 981.475 kb on + strand, within DZA65_RS04715 at 981.476 kb on - strand, within DZA65_RS04715 at 981.498 kb on - strand, within DZA65_RS04715 at 981.498 kb on - strand, within DZA65_RS04715 at 981.559 kb on + strand, within DZA65_RS04715 at 981.559 kb on + strand, within DZA65_RS04715 at 981.559 kb on + strand, within DZA65_RS04715 at 981.559 kb on + strand, within DZA65_RS04715 at 981.560 kb on - strand, within DZA65_RS04715 at 981.591 kb on - strand, within DZA65_RS04715 at 981.607 kb on + strand, within DZA65_RS04715 at 981.607 kb on + strand, within DZA65_RS04715 at 981.608 kb on - strand, within DZA65_RS04715 at 981.608 kb on - strand, within DZA65_RS04715 at 981.852 kb on + strand, within DZA65_RS04720 at 981.852 kb on + strand, within DZA65_RS04720 at 981.881 kb on + strand, within DZA65_RS04720 at 981.881 kb on + strand, within DZA65_RS04720 at 981.945 kb on - strand at 981.981 kb on + strand at 982.021 kb on + strand at 982.021 kb on + strand at 982.022 kb on - strand at 982.022 kb on - strand at 982.023 kb on + strand at 982.115 kb on - strand, within DZA65_RS04725 at 982.146 kb on + strand, within DZA65_RS04725 at 982.155 kb on + strand, within DZA65_RS04725 at 982.156 kb on - strand, within DZA65_RS04725 at 982.156 kb on - strand, within DZA65_RS04725 at 982.164 kb on + strand, within DZA65_RS04725 at 982.164 kb on + strand, within DZA65_RS04725 at 982.164 kb on + strand, within DZA65_RS04725 at 982.164 kb on + strand, within DZA65_RS04725 at 982.165 kb on - strand, within DZA65_RS04725 at 982.168 kb on + strand, within DZA65_RS04725 at 982.168 kb on + strand, within DZA65_RS04725 at 982.168 kb on + strand, within DZA65_RS04725 at 982.168 kb on + strand, within DZA65_RS04725 at 982.168 kb on + strand, within DZA65_RS04725 at 982.168 kb on + strand, within DZA65_RS04725 at 982.168 kb on + strand, within DZA65_RS04725 at 982.168 kb on + strand, within DZA65_RS04725 at 982.168 kb on + strand, within DZA65_RS04725 at 982.169 kb on - strand, within DZA65_RS04725 at 982.169 kb on - strand, within DZA65_RS04725 at 982.169 kb on - strand, within DZA65_RS04725 at 982.169 kb on - strand, within DZA65_RS04725 at 982.169 kb on - strand, within DZA65_RS04725 at 982.169 kb on - strand, within DZA65_RS04725 at 982.169 kb on - strand, within DZA65_RS04725 at 982.175 kb on - strand, within DZA65_RS04725 at 982.274 kb on + strand at 982.274 kb on + strand, within DZA65_RS04725 at 982.274 kb on + strand, within DZA65_RS04725 at 982.275 kb on - strand, within DZA65_RS04725 at 982.314 kb on + strand, within DZA65_RS04725 at 982.314 kb on + strand, within DZA65_RS04725 at 982.314 kb on + strand, within DZA65_RS04725 at 982.314 kb on + strand, within DZA65_RS04725 at 982.314 kb on + strand, within DZA65_RS04725 at 982.315 kb on - strand, within DZA65_RS04725 at 982.315 kb on - strand, within DZA65_RS04725 at 982.315 kb on - strand, within DZA65_RS04725 at 982.315 kb on - strand, within DZA65_RS04725 at 982.319 kb on + strand, within DZA65_RS04725 at 982.319 kb on + strand, within DZA65_RS04725 at 982.319 kb on + strand, within DZA65_RS04725 at 982.319 kb on + strand, within DZA65_RS04725 at 982.319 kb on + strand, within DZA65_RS04725 at 982.319 kb on + strand, within DZA65_RS04725 at 982.320 kb on - strand, within DZA65_RS04725 at 982.351 kb on - strand, within DZA65_RS04725 at 982.351 kb on - strand, within DZA65_RS04725 at 982.351 kb on - strand at 982.351 kb on - strand, within DZA65_RS04725 at 982.351 kb on - strand, within DZA65_RS04725 at 982.378 kb on - strand, within DZA65_RS04725 at 982.474 kb on + strand at 982.503 kb on - strand at 982.503 kb on - strand at 982.531 kb on + strand at 982.532 kb on - strand at 982.532 kb on - strand at 982.535 kb on + strand at 982.535 kb on + strand at 982.536 kb on - strand at 982.579 kb on + strand, within DZA65_RS04730 at 982.579 kb on + strand, within DZA65_RS04730 at 982.623 kb on - strand, within DZA65_RS04730 at 982.697 kb on - strand, within DZA65_RS04730
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 981,022 + +0.4 981,026 + -0.7 981,026 + -0.0 981,026 + +1.2 981,026 + -0.0 981,072 - -0.7 981,072 - +0.6 981,072 - -0.0 981,072 - -0.0 981,072 - -0.4 981,072 - +0.4 981,072 - +0.2 981,072 - +1.2 981,200 + -0.0 981,204 + +1.0 981,204 + -0.4 981,217 + -0.2 981,218 - -1.7 981,226 + -1.5 981,231 + -1.2 981,231 + -0.0 981,231 + +0.7 981,232 - -0.4 981,234 + -1.0 981,234 + -0.4 981,234 + +0.3 981,234 + +0.3 981,235 - -0.3 981,287 + -0.0 981,287 + -0.2 981,287 + -0.3 981,287 + -0.4 981,287 + -0.3 981,287 + -0.7 981,287 + -1.4 981,287 + +0.6 981,287 + +0.1 981,287 + -0.6 981,288 - -0.3 981,288 - -1.3 981,288 - +0.1 981,288 - -1.0 981,288 - -1.0 981,288 - -0.0 981,288 - -1.4 981,288 - -1.4 981,288 - -2.7 981,291 + -1.2 981,320 - -0.3 981,344 + +0.1 981,344 + -1.0 981,345 - -0.7 981,345 - -2.2 981,348 + -1.0 981,348 + +0.6 981,348 + -0.4 981,349 - -1.4 981,349 - -0.4 981,349 - -1.6 981,412 + -0.1 981,412 + +0.6 981,413 - -0.1 981,413 - -0.0 981,418 + -1.5 981,418 + -0.4 981,418 + -0.2 981,418 + -0.2 981,418 + -0.7 981,418 + -0.0 981,418 + -1.3 981,418 + -0.8 981,418 + -1.4 981,419 - -0.1 981,419 - -1.0 981,419 - -0.7 981,419 - -0.0 981,419 - -0.7 981,419 - +0.2 981,421 + +0.3 981,421 + +0.1 981,421 + -0.7 981,421 + +0.4 981,422 - +0.6 981,422 - -1.2 981,422 - -0.2 981,422 - -0.7 981,475 + DZA65_RS04715 0.26 +1.0 981,476 - DZA65_RS04715 0.26 +0.6 981,498 - DZA65_RS04715 0.34 +0.1 981,498 - DZA65_RS04715 0.34 +0.3 981,559 + DZA65_RS04715 0.54 -0.6 981,559 + DZA65_RS04715 0.54 -1.1 981,559 + DZA65_RS04715 0.54 +3.2 981,559 + DZA65_RS04715 0.54 -2.1 981,560 - DZA65_RS04715 0.54 -1.3 981,591 - DZA65_RS04715 0.64 +0.1 981,607 + DZA65_RS04715 0.69 +0.6 981,607 + DZA65_RS04715 0.69 -0.7 981,608 - DZA65_RS04715 0.70 +0.1 981,608 - DZA65_RS04715 0.70 -0.8 981,852 + DZA65_RS04720 0.68 +0.7 981,852 + DZA65_RS04720 0.68 -2.1 981,881 + DZA65_RS04720 0.81 +1.3 981,881 + DZA65_RS04720 0.81 -1.0 981,945 - +0.6 981,981 + -0.7 982,021 + +0.7 982,021 + -0.4 982,022 - -0.3 982,022 - +0.4 982,023 + +0.7 982,115 - DZA65_RS04725 0.30 -0.0 982,146 + DZA65_RS04725 0.37 +0.5 982,155 + DZA65_RS04725 0.39 +1.6 982,156 - DZA65_RS04725 0.39 -0.0 982,156 - DZA65_RS04725 0.39 -0.0 982,164 + DZA65_RS04725 0.41 -0.6 982,164 + DZA65_RS04725 0.41 -0.7 982,164 + DZA65_RS04725 0.41 +0.3 982,164 + DZA65_RS04725 0.41 -0.4 982,165 - DZA65_RS04725 0.41 -0.8 982,168 + DZA65_RS04725 0.42 +0.8 982,168 + DZA65_RS04725 0.42 -1.3 982,168 + DZA65_RS04725 0.42 -0.6 982,168 + DZA65_RS04725 0.42 -0.4 982,168 + DZA65_RS04725 0.42 -1.4 982,168 + DZA65_RS04725 0.42 +0.2 982,168 + DZA65_RS04725 0.42 -1.4 982,168 + DZA65_RS04725 0.42 +0.6 982,168 + DZA65_RS04725 0.42 -0.6 982,169 - DZA65_RS04725 0.42 -1.7 982,169 - DZA65_RS04725 0.42 -0.6 982,169 - DZA65_RS04725 0.42 -0.0 982,169 - DZA65_RS04725 0.42 -1.2 982,169 - DZA65_RS04725 0.42 -0.2 982,169 - DZA65_RS04725 0.42 -0.0 982,169 - DZA65_RS04725 0.42 +0.6 982,175 - DZA65_RS04725 0.44 +2.6 982,274 + -1.0 982,274 + DZA65_RS04725 0.66 -0.3 982,274 + DZA65_RS04725 0.66 -1.3 982,275 - DZA65_RS04725 0.66 -1.0 982,314 + DZA65_RS04725 0.75 +0.6 982,314 + DZA65_RS04725 0.75 -0.0 982,314 + DZA65_RS04725 0.75 -1.2 982,314 + DZA65_RS04725 0.75 -0.6 982,314 + DZA65_RS04725 0.75 -0.3 982,315 - DZA65_RS04725 0.75 -0.0 982,315 - DZA65_RS04725 0.75 -0.7 982,315 - DZA65_RS04725 0.75 +0.6 982,315 - DZA65_RS04725 0.75 -1.2 982,319 + DZA65_RS04725 0.76 -0.7 982,319 + DZA65_RS04725 0.76 -1.0 982,319 + DZA65_RS04725 0.76 -0.2 982,319 + DZA65_RS04725 0.76 -1.2 982,319 + DZA65_RS04725 0.76 -0.5 982,319 + DZA65_RS04725 0.76 +0.5 982,320 - DZA65_RS04725 0.76 +0.8 982,351 - DZA65_RS04725 0.83 -0.0 982,351 - DZA65_RS04725 0.83 -0.4 982,351 - +2.6 982,351 - DZA65_RS04725 0.83 -2.0 982,351 - DZA65_RS04725 0.83 -0.4 982,378 - DZA65_RS04725 0.89 -0.7 982,474 + +0.1 982,503 - -0.6 982,503 - -0.7 982,531 + +0.3 982,532 - -2.4 982,532 - -1.0 982,535 + +0.6 982,535 + +0.4 982,536 - -1.0 982,579 + DZA65_RS04730 0.25 -0.6 982,579 + DZA65_RS04730 0.25 +0.4 982,623 - DZA65_RS04730 0.49 -1.2 982,697 - DZA65_RS04730 0.89 -0.7
Or see this region's nucleotide sequence