Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS04615 and DZA65_RS04625 are separated by 475 nucleotides DZA65_RS04625 and DZA65_RS04630 are separated by 70 nucleotides DZA65_RS04630 and DZA65_RS04640 are separated by 763 nucleotides
DZA65_RS04615: DZA65_RS04615 - alpha/beta hydrolase, at 965,915 to 966,655
_RS04615
DZA65_RS04625: DZA65_RS04625 - IS4 family transposase, at 967,131 to 967,287
_RS04625
DZA65_RS04630: DZA65_RS04630 - ATP-binding protein, at 967,358 to 967,639
_RS04630
DZA65_RS04640: DZA65_RS04640 - Expansin-yoaJ, at 968,403 to 969,128
_RS04640
Position (kb) 967
968 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 966.358 kb on + strand, within DZA65_RS04615 at 966.358 kb on + strand, within DZA65_RS04615 at 966.359 kb on - strand, within DZA65_RS04615 at 966.361 kb on + strand, within DZA65_RS04615 at 966.371 kb on + strand, within DZA65_RS04615 at 966.411 kb on - strand, within DZA65_RS04615 at 966.434 kb on + strand, within DZA65_RS04615 at 966.469 kb on + strand, within DZA65_RS04615 at 966.562 kb on + strand, within DZA65_RS04615 at 966.650 kb on + strand at 966.911 kb on + strand at 966.936 kb on + strand at 966.936 kb on + strand at 966.941 kb on - strand at 966.968 kb on - strand at 966.968 kb on - strand at 966.989 kb on + strand at 966.991 kb on + strand at 967.130 kb on + strand at 967.130 kb on + strand at 967.130 kb on + strand at 967.130 kb on + strand at 967.131 kb on - strand at 967.131 kb on - strand at 967.131 kb on - strand at 967.140 kb on + strand at 967.205 kb on + strand, within DZA65_RS04625 at 967.206 kb on - strand, within DZA65_RS04625 at 967.265 kb on + strand, within DZA65_RS04625 at 967.266 kb on - strand, within DZA65_RS04625 at 967.266 kb on - strand, within DZA65_RS04625 at 967.266 kb on - strand, within DZA65_RS04625 at 967.266 kb on - strand, within DZA65_RS04625 at 967.400 kb on + strand, within DZA65_RS04630 at 967.400 kb on + strand, within DZA65_RS04630 at 967.401 kb on - strand, within DZA65_RS04630 at 967.401 kb on - strand, within DZA65_RS04630 at 967.474 kb on + strand, within DZA65_RS04630 at 967.475 kb on - strand, within DZA65_RS04630 at 967.475 kb on - strand, within DZA65_RS04630 at 967.475 kb on - strand, within DZA65_RS04630 at 967.475 kb on - strand, within DZA65_RS04630 at 967.594 kb on + strand, within DZA65_RS04630 at 967.603 kb on + strand, within DZA65_RS04630 at 967.603 kb on + strand, within DZA65_RS04630 at 967.647 kb on + strand at 967.648 kb on - strand at 967.648 kb on - strand at 967.651 kb on + strand at 967.651 kb on + strand at 967.652 kb on - strand at 967.652 kb on - strand at 967.698 kb on + strand at 967.698 kb on + strand at 967.699 kb on - strand at 967.699 kb on - strand at 967.702 kb on + strand at 967.702 kb on + strand at 967.702 kb on + strand at 967.702 kb on + strand at 967.702 kb on + strand at 967.702 kb on + strand at 967.702 kb on + strand at 967.702 kb on + strand at 967.702 kb on + strand at 967.702 kb on + strand at 967.702 kb on + strand at 967.702 kb on + strand at 967.702 kb on + strand at 967.703 kb on - strand at 967.703 kb on - strand at 967.703 kb on - strand at 967.703 kb on - strand at 967.703 kb on - strand at 967.703 kb on - strand at 967.703 kb on - strand at 967.703 kb on - strand at 967.703 kb on - strand at 967.703 kb on - strand at 967.703 kb on - strand at 967.703 kb on - strand at 967.703 kb on - strand at 967.703 kb on - strand at 967.703 kb on - strand at 967.703 kb on - strand at 967.703 kb on - strand at 967.703 kb on - strand at 967.703 kb on - strand at 967.703 kb on - strand at 967.703 kb on - strand at 967.709 kb on + strand at 967.709 kb on + strand at 967.710 kb on - strand at 967.726 kb on + strand at 967.727 kb on - strand at 967.727 kb on - strand at 967.734 kb on - strand at 967.734 kb on - strand at 967.771 kb on + strand at 967.810 kb on + strand at 967.810 kb on + strand at 967.810 kb on + strand at 967.811 kb on - strand at 967.814 kb on - strand at 967.927 kb on + strand at 967.927 kb on + strand at 967.927 kb on + strand at 967.927 kb on + strand at 967.928 kb on - strand at 967.928 kb on - strand at 967.928 kb on - strand at 967.938 kb on + strand at 967.938 kb on + strand at 967.938 kb on + strand at 967.939 kb on - strand at 967.939 kb on - strand at 967.954 kb on + strand at 967.959 kb on + strand at 967.959 kb on + strand at 967.982 kb on - strand at 967.982 kb on - strand at 967.982 kb on - strand at 967.986 kb on + strand at 968.024 kb on + strand at 968.024 kb on + strand at 968.024 kb on + strand at 968.024 kb on + strand at 968.025 kb on - strand at 968.025 kb on - strand at 968.025 kb on - strand at 968.025 kb on - strand at 968.025 kb on - strand at 968.025 kb on - strand at 968.025 kb on - strand at 968.025 kb on - strand at 968.060 kb on + strand at 968.061 kb on - strand at 968.073 kb on + strand at 968.073 kb on + strand at 968.073 kb on + strand at 968.074 kb on - strand at 968.074 kb on - strand at 968.079 kb on + strand at 968.079 kb on + strand at 968.079 kb on + strand at 968.079 kb on + strand at 968.086 kb on + strand at 968.148 kb on + strand at 968.248 kb on + strand at 968.248 kb on + strand at 968.248 kb on + strand at 968.249 kb on - strand at 968.293 kb on + strand at 968.294 kb on - strand at 968.317 kb on + strand at 968.383 kb on - strand at 968.383 kb on - strand at 968.383 kb on - strand at 968.420 kb on - strand at 968.420 kb on - strand at 968.420 kb on - strand at 968.440 kb on + strand at 968.440 kb on + strand at 968.441 kb on - strand at 968.468 kb on + strand at 968.468 kb on + strand at 968.468 kb on + strand at 968.469 kb on - strand at 968.469 kb on - strand at 968.469 kb on - strand at 968.492 kb on + strand, within DZA65_RS04640 at 968.492 kb on + strand, within DZA65_RS04640 at 968.492 kb on + strand, within DZA65_RS04640 at 968.493 kb on - strand, within DZA65_RS04640 at 968.493 kb on - strand, within DZA65_RS04640 at 968.493 kb on - strand, within DZA65_RS04640 at 968.512 kb on + strand, within DZA65_RS04640 at 968.512 kb on + strand, within DZA65_RS04640 at 968.512 kb on + strand, within DZA65_RS04640 at 968.512 kb on + strand, within DZA65_RS04640 at 968.512 kb on + strand, within DZA65_RS04640 at 968.512 kb on + strand, within DZA65_RS04640 at 968.513 kb on - strand, within DZA65_RS04640 at 968.513 kb on - strand, within DZA65_RS04640 at 968.513 kb on - strand, within DZA65_RS04640 at 968.513 kb on - strand, within DZA65_RS04640 at 968.513 kb on - strand, within DZA65_RS04640 at 968.566 kb on + strand, within DZA65_RS04640 at 968.566 kb on + strand, within DZA65_RS04640 at 968.566 kb on + strand at 968.566 kb on + strand, within DZA65_RS04640 at 968.567 kb on - strand, within DZA65_RS04640 at 968.567 kb on - strand, within DZA65_RS04640 at 968.569 kb on + strand, within DZA65_RS04640 at 968.570 kb on - strand, within DZA65_RS04640 at 968.588 kb on + strand, within DZA65_RS04640 at 968.589 kb on - strand, within DZA65_RS04640 at 968.589 kb on - strand, within DZA65_RS04640 at 968.589 kb on - strand, within DZA65_RS04640 at 968.589 kb on - strand, within DZA65_RS04640 at 968.591 kb on + strand, within DZA65_RS04640 at 968.591 kb on + strand, within DZA65_RS04640 at 968.591 kb on + strand, within DZA65_RS04640 at 968.592 kb on - strand, within DZA65_RS04640 at 968.592 kb on - strand, within DZA65_RS04640
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 966,358 + DZA65_RS04615 0.60 -0.0 966,358 + DZA65_RS04615 0.60 -1.2 966,359 - DZA65_RS04615 0.60 -0.7 966,361 + DZA65_RS04615 0.60 -1.5 966,371 + DZA65_RS04615 0.62 +0.6 966,411 - DZA65_RS04615 0.67 -0.1 966,434 + DZA65_RS04615 0.70 +0.0 966,469 + DZA65_RS04615 0.75 +1.2 966,562 + DZA65_RS04615 0.87 -0.0 966,650 + -2.2 966,911 + -0.3 966,936 + -0.0 966,936 + +0.8 966,941 - +0.3 966,968 - -0.1 966,968 - +0.6 966,989 + -1.6 966,991 + -1.5 967,130 + -0.0 967,130 + -0.7 967,130 + +0.6 967,130 + -2.7 967,131 - -0.7 967,131 - -1.4 967,131 - -1.4 967,140 + -0.7 967,205 + DZA65_RS04625 0.47 +0.2 967,206 - DZA65_RS04625 0.48 -0.3 967,265 + DZA65_RS04625 0.85 +0.4 967,266 - DZA65_RS04625 0.86 +0.6 967,266 - DZA65_RS04625 0.86 -0.6 967,266 - DZA65_RS04625 0.86 +0.2 967,266 - DZA65_RS04625 0.86 -1.7 967,400 + DZA65_RS04630 0.15 -1.1 967,400 + DZA65_RS04630 0.15 +1.6 967,401 - DZA65_RS04630 0.15 -2.0 967,401 - DZA65_RS04630 0.15 +1.0 967,474 + DZA65_RS04630 0.41 +0.3 967,475 - DZA65_RS04630 0.41 -1.2 967,475 - DZA65_RS04630 0.41 +0.7 967,475 - DZA65_RS04630 0.41 +1.2 967,475 - DZA65_RS04630 0.41 -0.6 967,594 + DZA65_RS04630 0.84 +2.2 967,603 + DZA65_RS04630 0.87 -0.4 967,603 + DZA65_RS04630 0.87 +0.4 967,647 + -1.8 967,648 - +0.2 967,648 - -0.4 967,651 + -2.2 967,651 + -0.1 967,652 - -0.7 967,652 - -0.2 967,698 + +1.0 967,698 + +1.4 967,699 - -1.0 967,699 - +0.6 967,702 + +0.3 967,702 + -1.6 967,702 + -0.2 967,702 + -0.6 967,702 + +0.8 967,702 + -1.8 967,702 + -0.1 967,702 + -2.3 967,702 + -1.2 967,702 + -1.6 967,702 + +0.8 967,702 + -0.1 967,702 + -1.6 967,703 - +0.7 967,703 - +0.8 967,703 - -0.6 967,703 - -0.0 967,703 - -0.0 967,703 - +1.3 967,703 - -2.0 967,703 - +0.2 967,703 - +1.6 967,703 - +0.8 967,703 - -1.4 967,703 - +0.1 967,703 - -0.7 967,703 - -0.4 967,703 - -1.3 967,703 - -0.2 967,703 - -1.0 967,703 - -1.2 967,703 - +0.6 967,703 - +0.2 967,703 - -0.9 967,709 + +0.2 967,709 + -1.5 967,710 - -0.0 967,726 + -1.3 967,727 - -0.5 967,727 - -3.2 967,734 - +0.3 967,734 - +1.2 967,771 + -1.4 967,810 + -0.0 967,810 + +0.6 967,810 + +0.1 967,811 - -0.7 967,814 - -1.4 967,927 + -0.7 967,927 + -1.2 967,927 + -0.7 967,927 + -2.6 967,928 - +0.2 967,928 - -1.1 967,928 - +1.2 967,938 + +0.1 967,938 + -1.7 967,938 + -1.6 967,939 - -1.0 967,939 - -0.5 967,954 + -1.2 967,959 + -0.2 967,959 + +0.2 967,982 - -0.1 967,982 - -1.7 967,982 - -1.1 967,986 + -0.9 968,024 + +0.2 968,024 + +0.6 968,024 + -1.2 968,024 + +0.2 968,025 - -0.1 968,025 - -0.4 968,025 - -0.9 968,025 - -0.4 968,025 - -1.3 968,025 - -0.2 968,025 - +1.3 968,025 - -0.0 968,060 + -0.6 968,061 - -1.3 968,073 + -0.7 968,073 + -1.0 968,073 + -0.4 968,074 - -1.1 968,074 - -0.4 968,079 + -0.0 968,079 + +1.6 968,079 + -0.2 968,079 + -0.7 968,086 + -0.7 968,148 + +2.9 968,248 + -1.0 968,248 + +0.6 968,248 + -1.6 968,249 - +0.3 968,293 + -0.9 968,294 - -0.8 968,317 + +0.3 968,383 - -0.4 968,383 - -1.0 968,383 - +0.3 968,420 - -0.4 968,420 - +0.6 968,420 - -1.0 968,440 + -1.2 968,440 + -0.0 968,441 - -0.7 968,468 + -1.1 968,468 + -0.1 968,468 + +0.4 968,469 - -1.0 968,469 - -0.7 968,469 - +0.3 968,492 + DZA65_RS04640 0.12 -0.6 968,492 + DZA65_RS04640 0.12 -0.5 968,492 + DZA65_RS04640 0.12 +1.9 968,493 - DZA65_RS04640 0.12 -0.7 968,493 - DZA65_RS04640 0.12 -1.0 968,493 - DZA65_RS04640 0.12 -0.4 968,512 + DZA65_RS04640 0.15 -0.4 968,512 + DZA65_RS04640 0.15 -0.6 968,512 + DZA65_RS04640 0.15 -0.4 968,512 + DZA65_RS04640 0.15 -0.3 968,512 + DZA65_RS04640 0.15 -2.7 968,512 + DZA65_RS04640 0.15 +0.6 968,513 - DZA65_RS04640 0.15 +0.3 968,513 - DZA65_RS04640 0.15 +0.8 968,513 - DZA65_RS04640 0.15 -1.5 968,513 - DZA65_RS04640 0.15 +0.2 968,513 - DZA65_RS04640 0.15 -0.5 968,566 + DZA65_RS04640 0.22 -2.2 968,566 + DZA65_RS04640 0.22 -0.9 968,566 + +1.0 968,566 + DZA65_RS04640 0.22 +0.8 968,567 - DZA65_RS04640 0.23 -0.9 968,567 - DZA65_RS04640 0.23 -0.4 968,569 + DZA65_RS04640 0.23 -0.0 968,570 - DZA65_RS04640 0.23 -0.1 968,588 + DZA65_RS04640 0.25 -0.3 968,589 - DZA65_RS04640 0.26 -1.4 968,589 - DZA65_RS04640 0.26 -2.1 968,589 - DZA65_RS04640 0.26 -1.4 968,589 - DZA65_RS04640 0.26 +0.3 968,591 + DZA65_RS04640 0.26 +0.3 968,591 + DZA65_RS04640 0.26 -0.9 968,591 + DZA65_RS04640 0.26 -0.6 968,592 - DZA65_RS04640 0.26 -0.3 968,592 - DZA65_RS04640 0.26 -1.6
Or see this region's nucleotide sequence