Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS04600 and DZA65_RS04605 are separated by 713 nucleotides DZA65_RS04605 and DZA65_RS04610 are separated by 111 nucleotides DZA65_RS04610 and DZA65_RS04615 are separated by 106 nucleotides
DZA65_RS04600: DZA65_RS04600 - conjugal transfer protein TraF, at 963,179 to 964,426
_RS04600
DZA65_RS04605: DZA65_RS04605 - helix-turn-helix transcriptional regulator, at 965,140 to 965,535
_RS04605
DZA65_RS04610: DZA65_RS04610 - transposase, at 965,647 to 965,808
_RS04610
DZA65_RS04615: DZA65_RS04615 - alpha/beta hydrolase, at 965,915 to 966,655
_RS04615
Position (kb) 965
966 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 964.142 kb on - strand, within DZA65_RS04600 at 964.181 kb on + strand, within DZA65_RS04600 at 964.181 kb on + strand, within DZA65_RS04600 at 964.181 kb on + strand, within DZA65_RS04600 at 964.182 kb on - strand, within DZA65_RS04600 at 964.182 kb on - strand, within DZA65_RS04600 at 964.182 kb on - strand, within DZA65_RS04600 at 964.182 kb on - strand, within DZA65_RS04600 at 964.182 kb on - strand, within DZA65_RS04600 at 964.182 kb on - strand, within DZA65_RS04600 at 964.232 kb on - strand, within DZA65_RS04600 at 964.325 kb on - strand at 964.421 kb on - strand at 964.426 kb on + strand at 964.426 kb on + strand at 964.427 kb on - strand at 964.427 kb on - strand at 964.427 kb on - strand at 964.452 kb on + strand at 964.500 kb on + strand at 964.521 kb on - strand at 964.587 kb on - strand at 964.670 kb on - strand at 964.892 kb on - strand at 964.909 kb on + strand at 964.928 kb on - strand at 964.935 kb on + strand at 964.991 kb on + strand at 964.991 kb on + strand at 964.992 kb on - strand at 964.996 kb on - strand at 964.996 kb on - strand at 965.009 kb on + strand at 965.009 kb on + strand at 965.024 kb on - strand at 965.035 kb on - strand at 965.035 kb on - strand at 965.035 kb on - strand at 965.077 kb on - strand at 965.087 kb on + strand at 965.087 kb on + strand at 965.087 kb on + strand at 965.088 kb on - strand at 965.134 kb on + strand at 965.135 kb on - strand at 965.139 kb on + strand at 965.139 kb on + strand at 965.139 kb on + strand at 965.140 kb on - strand at 965.174 kb on + strand at 965.207 kb on + strand, within DZA65_RS04605 at 965.214 kb on + strand, within DZA65_RS04605 at 965.214 kb on + strand, within DZA65_RS04605 at 965.214 kb on + strand, within DZA65_RS04605 at 965.214 kb on + strand, within DZA65_RS04605 at 965.214 kb on + strand, within DZA65_RS04605 at 965.214 kb on + strand, within DZA65_RS04605 at 965.214 kb on + strand, within DZA65_RS04605 at 965.215 kb on - strand, within DZA65_RS04605 at 965.215 kb on - strand, within DZA65_RS04605 at 965.215 kb on - strand, within DZA65_RS04605 at 965.215 kb on - strand, within DZA65_RS04605 at 965.215 kb on - strand, within DZA65_RS04605 at 965.215 kb on - strand, within DZA65_RS04605 at 965.215 kb on - strand, within DZA65_RS04605 at 965.313 kb on + strand, within DZA65_RS04605 at 965.313 kb on + strand, within DZA65_RS04605 at 965.313 kb on + strand, within DZA65_RS04605 at 965.313 kb on + strand, within DZA65_RS04605 at 965.313 kb on + strand, within DZA65_RS04605 at 965.314 kb on - strand, within DZA65_RS04605 at 965.314 kb on - strand, within DZA65_RS04605 at 965.314 kb on - strand, within DZA65_RS04605 at 965.314 kb on - strand, within DZA65_RS04605 at 965.314 kb on - strand, within DZA65_RS04605 at 965.314 kb on - strand, within DZA65_RS04605 at 965.314 kb on - strand, within DZA65_RS04605 at 965.330 kb on + strand, within DZA65_RS04605 at 965.330 kb on + strand at 965.330 kb on + strand, within DZA65_RS04605 at 965.330 kb on + strand, within DZA65_RS04605 at 965.330 kb on + strand, within DZA65_RS04605 at 965.330 kb on + strand, within DZA65_RS04605 at 965.331 kb on - strand, within DZA65_RS04605 at 965.331 kb on - strand, within DZA65_RS04605 at 965.331 kb on - strand, within DZA65_RS04605 at 965.331 kb on - strand, within DZA65_RS04605 at 965.372 kb on - strand, within DZA65_RS04605 at 965.372 kb on - strand, within DZA65_RS04605 at 965.372 kb on - strand, within DZA65_RS04605 at 965.398 kb on + strand, within DZA65_RS04605 at 965.398 kb on + strand, within DZA65_RS04605 at 965.398 kb on + strand, within DZA65_RS04605 at 965.398 kb on + strand, within DZA65_RS04605 at 965.399 kb on - strand, within DZA65_RS04605 at 965.543 kb on + strand at 965.543 kb on + strand at 965.543 kb on + strand at 965.543 kb on + strand at 965.543 kb on + strand at 965.543 kb on + strand at 965.543 kb on + strand at 965.543 kb on + strand at 965.543 kb on + strand at 965.543 kb on + strand at 965.544 kb on - strand at 965.544 kb on - strand at 965.544 kb on - strand at 965.544 kb on - strand at 965.544 kb on - strand at 965.544 kb on - strand at 965.544 kb on - strand at 965.544 kb on - strand at 965.544 kb on - strand at 965.544 kb on - strand at 965.544 kb on - strand at 965.544 kb on - strand at 965.546 kb on - strand at 965.608 kb on + strand at 965.608 kb on + strand at 965.608 kb on + strand at 965.608 kb on + strand at 965.608 kb on + strand at 965.608 kb on + strand at 965.608 kb on + strand at 965.608 kb on + strand at 965.608 kb on + strand at 965.609 kb on - strand at 965.609 kb on - strand at 965.609 kb on - strand at 965.609 kb on - strand at 965.609 kb on - strand at 965.615 kb on + strand at 965.615 kb on + strand at 965.616 kb on - strand at 965.633 kb on - strand at 965.795 kb on + strand at 965.796 kb on - strand at 965.814 kb on + strand at 965.825 kb on - strand at 965.825 kb on - strand at 965.855 kb on - strand at 965.908 kb on - strand at 965.954 kb on + strand at 965.955 kb on - strand at 965.985 kb on - strand at 966.013 kb on + strand, within DZA65_RS04615 at 966.079 kb on + strand, within DZA65_RS04615 at 966.085 kb on + strand, within DZA65_RS04615 at 966.241 kb on + strand, within DZA65_RS04615 at 966.312 kb on - strand, within DZA65_RS04615 at 966.358 kb on + strand, within DZA65_RS04615 at 966.358 kb on + strand, within DZA65_RS04615 at 966.359 kb on - strand, within DZA65_RS04615 at 966.361 kb on + strand, within DZA65_RS04615 at 966.371 kb on + strand, within DZA65_RS04615 at 966.411 kb on - strand, within DZA65_RS04615 at 966.434 kb on + strand, within DZA65_RS04615 at 966.469 kb on + strand, within DZA65_RS04615
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 964,142 - DZA65_RS04600 0.77 -0.0 964,181 + DZA65_RS04600 0.80 -0.3 964,181 + DZA65_RS04600 0.80 -0.5 964,181 + DZA65_RS04600 0.80 -0.3 964,182 - DZA65_RS04600 0.80 +3.9 964,182 - DZA65_RS04600 0.80 -0.2 964,182 - DZA65_RS04600 0.80 -0.2 964,182 - DZA65_RS04600 0.80 -0.0 964,182 - DZA65_RS04600 0.80 -0.7 964,182 - DZA65_RS04600 0.80 -0.7 964,232 - DZA65_RS04600 0.84 -0.0 964,325 - -1.4 964,421 - -1.2 964,426 + -1.2 964,426 + -0.7 964,427 - +0.6 964,427 - -2.4 964,427 - +0.4 964,452 + +0.5 964,500 + +0.2 964,521 - -0.7 964,587 - -1.4 964,670 - +0.6 964,892 - -0.0 964,909 + -1.2 964,928 - -0.4 964,935 + -0.3 964,991 + -0.2 964,991 + -0.0 964,992 - +1.0 964,996 - -0.6 964,996 - -1.0 965,009 + -1.2 965,009 + +0.8 965,024 - +0.4 965,035 - +0.9 965,035 - -0.4 965,035 - +0.1 965,077 - -0.9 965,087 + +0.5 965,087 + -0.3 965,087 + +0.2 965,088 - -0.0 965,134 + -0.9 965,135 - -2.0 965,139 + -0.7 965,139 + -1.1 965,139 + -0.2 965,140 - +0.1 965,174 + +0.6 965,207 + DZA65_RS04605 0.17 -1.5 965,214 + DZA65_RS04605 0.19 +1.5 965,214 + DZA65_RS04605 0.19 +0.1 965,214 + DZA65_RS04605 0.19 +1.6 965,214 + DZA65_RS04605 0.19 -0.3 965,214 + DZA65_RS04605 0.19 +0.3 965,214 + DZA65_RS04605 0.19 -1.2 965,214 + DZA65_RS04605 0.19 +1.3 965,215 - DZA65_RS04605 0.19 -0.2 965,215 - DZA65_RS04605 0.19 -1.2 965,215 - DZA65_RS04605 0.19 -0.1 965,215 - DZA65_RS04605 0.19 -0.1 965,215 - DZA65_RS04605 0.19 -0.5 965,215 - DZA65_RS04605 0.19 -0.8 965,215 - DZA65_RS04605 0.19 -1.9 965,313 + DZA65_RS04605 0.44 -0.0 965,313 + DZA65_RS04605 0.44 -0.7 965,313 + DZA65_RS04605 0.44 -1.1 965,313 + DZA65_RS04605 0.44 -0.3 965,313 + DZA65_RS04605 0.44 -0.0 965,314 - DZA65_RS04605 0.44 -0.2 965,314 - DZA65_RS04605 0.44 +1.4 965,314 - DZA65_RS04605 0.44 -0.7 965,314 - DZA65_RS04605 0.44 -1.2 965,314 - DZA65_RS04605 0.44 -0.6 965,314 - DZA65_RS04605 0.44 -0.6 965,314 - DZA65_RS04605 0.44 -0.7 965,330 + DZA65_RS04605 0.48 -0.2 965,330 + +0.6 965,330 + DZA65_RS04605 0.48 +1.0 965,330 + DZA65_RS04605 0.48 +0.4 965,330 + DZA65_RS04605 0.48 -0.1 965,330 + DZA65_RS04605 0.48 +0.7 965,331 - DZA65_RS04605 0.48 +0.3 965,331 - DZA65_RS04605 0.48 +0.9 965,331 - DZA65_RS04605 0.48 -0.5 965,331 - DZA65_RS04605 0.48 -1.6 965,372 - DZA65_RS04605 0.59 -1.1 965,372 - DZA65_RS04605 0.59 +2.6 965,372 - DZA65_RS04605 0.59 -1.4 965,398 + DZA65_RS04605 0.65 -1.5 965,398 + DZA65_RS04605 0.65 +0.6 965,398 + DZA65_RS04605 0.65 -0.9 965,398 + DZA65_RS04605 0.65 -1.9 965,399 - DZA65_RS04605 0.65 +0.2 965,543 + -0.0 965,543 + -0.9 965,543 + -0.1 965,543 + +0.6 965,543 + +0.6 965,543 + -2.2 965,543 + -0.3 965,543 + -2.4 965,543 + -0.4 965,543 + +1.4 965,544 - +0.2 965,544 - -0.7 965,544 - -0.4 965,544 - +0.8 965,544 - -2.0 965,544 - -0.2 965,544 - +0.8 965,544 - -0.7 965,544 - -1.5 965,544 - -1.1 965,544 - -0.6 965,544 - -1.0 965,546 - -0.0 965,608 + -0.6 965,608 + +0.3 965,608 + +0.6 965,608 + -2.0 965,608 + -0.5 965,608 + +0.6 965,608 + +0.6 965,608 + +0.0 965,608 + -0.2 965,609 - -0.9 965,609 - +0.8 965,609 - -0.6 965,609 - +0.1 965,609 - +0.6 965,615 + +0.7 965,615 + +0.2 965,616 - -0.1 965,633 - -0.4 965,795 + -0.7 965,796 - -0.4 965,814 + +0.2 965,825 - -0.3 965,825 - -1.4 965,855 - -0.7 965,908 - +0.4 965,954 + -1.2 965,955 - -1.2 965,985 - -1.3 966,013 + DZA65_RS04615 0.13 +0.1 966,079 + DZA65_RS04615 0.22 -0.2 966,085 + DZA65_RS04615 0.23 -1.3 966,241 + DZA65_RS04615 0.44 +0.3 966,312 - DZA65_RS04615 0.54 +0.2 966,358 + DZA65_RS04615 0.60 -0.0 966,358 + DZA65_RS04615 0.60 -1.2 966,359 - DZA65_RS04615 0.60 -0.7 966,361 + DZA65_RS04615 0.60 -1.5 966,371 + DZA65_RS04615 0.62 +0.6 966,411 - DZA65_RS04615 0.67 -0.1 966,434 + DZA65_RS04615 0.70 +0.0 966,469 + DZA65_RS04615 0.75 +1.2
Or see this region's nucleotide sequence