Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS04575 and DZA65_RS04580 are separated by 142 nucleotides DZA65_RS04580 and DZA65_RS04585 are separated by 2 nucleotides DZA65_RS04585 and DZA65_RS04590 are separated by 130 nucleotides
DZA65_RS04575: DZA65_RS04575 - MipA/OmpV family protein, at 955,986 to 956,771
_RS04575
DZA65_RS04580: DZA65_RS04580 - response regulator transcription factor, at 956,914 to 957,603
_RS04580
DZA65_RS04585: DZA65_RS04585 - HAMP domain-containing protein, at 957,606 to 958,775
_RS04585
DZA65_RS04590: DZA65_RS04590 - efflux RND transporter periplasmic adaptor subunit, at 958,906 to 960,048
_RS04590
Position (kb) 957
958
959 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 956.738 kb on + strand at 956.738 kb on + strand at 956.738 kb on + strand at 956.739 kb on - strand at 956.739 kb on - strand at 956.739 kb on - strand at 956.739 kb on - strand at 956.742 kb on + strand at 956.742 kb on + strand at 956.742 kb on + strand at 956.742 kb on + strand at 956.742 kb on + strand at 956.742 kb on + strand at 956.742 kb on + strand at 956.742 kb on + strand at 956.742 kb on + strand at 956.742 kb on + strand at 956.742 kb on + strand at 956.742 kb on + strand at 956.742 kb on + strand at 956.742 kb on + strand at 956.742 kb on + strand at 956.743 kb on - strand at 956.743 kb on - strand at 956.743 kb on - strand at 956.743 kb on - strand at 956.743 kb on - strand at 956.743 kb on - strand at 956.743 kb on - strand at 956.743 kb on - strand at 956.743 kb on - strand at 956.743 kb on - strand at 956.743 kb on - strand at 956.744 kb on + strand at 956.744 kb on + strand at 956.745 kb on - strand at 956.745 kb on - strand at 956.746 kb on + strand at 956.746 kb on + strand at 956.747 kb on - strand at 956.747 kb on - strand at 956.747 kb on - strand at 956.756 kb on + strand at 956.756 kb on + strand at 956.756 kb on + strand at 956.756 kb on + strand at 956.756 kb on + strand at 956.757 kb on - strand at 956.757 kb on - strand at 956.757 kb on - strand at 956.766 kb on + strand at 956.766 kb on + strand at 956.766 kb on + strand at 956.766 kb on + strand at 956.767 kb on - strand at 956.767 kb on - strand at 956.767 kb on - strand at 956.767 kb on - strand at 956.795 kb on + strand at 956.796 kb on - strand at 956.796 kb on - strand at 956.837 kb on - strand at 956.837 kb on - strand at 956.851 kb on - strand at 956.853 kb on + strand at 956.853 kb on + strand at 956.853 kb on + strand at 956.853 kb on + strand at 956.853 kb on + strand at 956.853 kb on + strand at 956.853 kb on + strand at 956.853 kb on + strand at 956.853 kb on + strand at 956.853 kb on + strand at 956.854 kb on - strand at 956.854 kb on - strand at 956.854 kb on - strand at 956.854 kb on - strand at 956.854 kb on - strand at 956.854 kb on - strand at 956.855 kb on + strand at 956.855 kb on + strand at 956.856 kb on - strand at 956.856 kb on - strand at 956.856 kb on - strand at 956.856 kb on - strand at 956.856 kb on - strand at 956.856 kb on - strand at 956.856 kb on - strand at 956.856 kb on - strand at 956.856 kb on - strand at 956.873 kb on + strand at 956.873 kb on + strand at 956.873 kb on + strand at 956.873 kb on + strand at 956.873 kb on + strand at 956.873 kb on + strand at 956.873 kb on + strand at 956.873 kb on + strand at 956.874 kb on - strand at 956.874 kb on - strand at 956.898 kb on + strand at 956.977 kb on + strand at 956.977 kb on + strand at 956.982 kb on - strand at 956.982 kb on - strand at 956.982 kb on - strand at 956.982 kb on - strand at 957.211 kb on + strand, within DZA65_RS04580 at 957.211 kb on + strand, within DZA65_RS04580 at 957.211 kb on + strand, within DZA65_RS04580 at 957.212 kb on - strand, within DZA65_RS04580 at 957.212 kb on - strand, within DZA65_RS04580 at 957.212 kb on - strand, within DZA65_RS04580 at 957.212 kb on - strand, within DZA65_RS04580 at 957.212 kb on - strand, within DZA65_RS04580 at 957.212 kb on - strand, within DZA65_RS04580 at 957.212 kb on - strand, within DZA65_RS04580 at 957.226 kb on + strand, within DZA65_RS04580 at 957.226 kb on + strand, within DZA65_RS04580 at 957.227 kb on - strand at 957.516 kb on + strand, within DZA65_RS04580 at 957.516 kb on + strand, within DZA65_RS04580 at 957.516 kb on + strand, within DZA65_RS04580 at 957.516 kb on + strand, within DZA65_RS04580 at 957.516 kb on + strand, within DZA65_RS04580 at 957.516 kb on + strand, within DZA65_RS04580 at 957.517 kb on - strand, within DZA65_RS04580 at 957.517 kb on - strand, within DZA65_RS04580 at 957.517 kb on - strand, within DZA65_RS04580 at 957.517 kb on - strand, within DZA65_RS04580 at 957.517 kb on - strand, within DZA65_RS04580 at 957.517 kb on - strand, within DZA65_RS04580 at 957.517 kb on - strand, within DZA65_RS04580 at 957.517 kb on - strand, within DZA65_RS04580 at 957.520 kb on + strand, within DZA65_RS04580 at 957.520 kb on + strand, within DZA65_RS04580 at 957.520 kb on + strand, within DZA65_RS04580 at 957.520 kb on + strand, within DZA65_RS04580 at 957.520 kb on + strand, within DZA65_RS04580 at 957.520 kb on + strand, within DZA65_RS04580 at 957.520 kb on + strand, within DZA65_RS04580 at 957.520 kb on + strand, within DZA65_RS04580 at 957.520 kb on + strand, within DZA65_RS04580 at 957.521 kb on - strand, within DZA65_RS04580 at 957.521 kb on - strand, within DZA65_RS04580 at 957.521 kb on - strand, within DZA65_RS04580 at 957.521 kb on - strand, within DZA65_RS04580 at 957.521 kb on - strand, within DZA65_RS04580 at 957.521 kb on - strand, within DZA65_RS04580 at 957.523 kb on - strand, within DZA65_RS04580 at 957.523 kb on - strand, within DZA65_RS04580 at 957.612 kb on - strand at 957.743 kb on + strand, within DZA65_RS04585 at 957.743 kb on + strand, within DZA65_RS04585 at 957.743 kb on + strand, within DZA65_RS04585 at 957.743 kb on + strand, within DZA65_RS04585 at 957.744 kb on - strand, within DZA65_RS04585 at 957.811 kb on - strand, within DZA65_RS04585 at 957.813 kb on + strand, within DZA65_RS04585 at 957.813 kb on + strand, within DZA65_RS04585 at 957.813 kb on + strand, within DZA65_RS04585 at 957.813 kb on + strand, within DZA65_RS04585 at 957.813 kb on + strand, within DZA65_RS04585 at 958.319 kb on + strand, within DZA65_RS04585 at 958.397 kb on + strand, within DZA65_RS04585 at 958.397 kb on + strand, within DZA65_RS04585 at 958.397 kb on + strand, within DZA65_RS04585 at 958.398 kb on - strand, within DZA65_RS04585 at 958.398 kb on - strand, within DZA65_RS04585 at 958.398 kb on - strand, within DZA65_RS04585 at 958.429 kb on - strand, within DZA65_RS04585 at 958.520 kb on + strand, within DZA65_RS04585 at 958.520 kb on + strand, within DZA65_RS04585 at 958.520 kb on + strand, within DZA65_RS04585 at 958.520 kb on + strand, within DZA65_RS04585 at 958.520 kb on + strand, within DZA65_RS04585 at 958.521 kb on - strand, within DZA65_RS04585 at 958.521 kb on - strand, within DZA65_RS04585 at 958.521 kb on - strand, within DZA65_RS04585 at 958.521 kb on - strand, within DZA65_RS04585 at 958.570 kb on - strand, within DZA65_RS04585 at 958.752 kb on - strand at 958.873 kb on + strand at 958.873 kb on + strand at 958.873 kb on + strand at 958.873 kb on + strand at 958.873 kb on + strand at 958.874 kb on - strand at 958.874 kb on - strand at 958.891 kb on - strand at 958.914 kb on + strand at 958.914 kb on + strand at 958.914 kb on + strand at 958.915 kb on - strand at 958.915 kb on - strand at 958.946 kb on + strand at 958.946 kb on + strand at 958.947 kb on - strand at 958.947 kb on - strand at 958.947 kb on - strand at 958.947 kb on - strand at 958.947 kb on - strand at 959.332 kb on - strand, within DZA65_RS04590 at 959.365 kb on - strand, within DZA65_RS04590 at 959.470 kb on + strand, within DZA65_RS04590 at 959.471 kb on - strand, within DZA65_RS04590 at 959.471 kb on - strand, within DZA65_RS04590 at 959.471 kb on - strand, within DZA65_RS04590 at 959.471 kb on - strand, within DZA65_RS04590 at 959.642 kb on + strand, within DZA65_RS04590
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 956,738 + -0.0 956,738 + +1.9 956,738 + -0.8 956,739 - -1.4 956,739 - -0.2 956,739 - +0.6 956,739 - +1.0 956,742 + -0.3 956,742 + +2.2 956,742 + -2.4 956,742 + -0.6 956,742 + -0.9 956,742 + +1.2 956,742 + -0.4 956,742 + -0.5 956,742 + +0.1 956,742 + +0.4 956,742 + -0.7 956,742 + -0.4 956,742 + -1.1 956,742 + +0.3 956,742 + -1.2 956,743 - +1.2 956,743 - -1.7 956,743 - +0.8 956,743 - -0.2 956,743 - -0.8 956,743 - +0.6 956,743 - -1.2 956,743 - +1.0 956,743 - -1.2 956,743 - -0.3 956,743 - +0.6 956,744 + -0.3 956,744 + -2.3 956,745 - -1.6 956,745 - -1.6 956,746 + -0.7 956,746 + +1.1 956,747 - +1.4 956,747 - -0.0 956,747 - +0.3 956,756 + -0.0 956,756 + -2.7 956,756 + +0.6 956,756 + +0.0 956,756 + +0.2 956,757 - +0.1 956,757 - -0.7 956,757 - -0.8 956,766 + -0.4 956,766 + +0.3 956,766 + +1.6 956,766 + -0.6 956,767 - -0.2 956,767 - +1.6 956,767 - -0.0 956,767 - -0.2 956,795 + -0.0 956,796 - -1.2 956,796 - +1.2 956,837 - -1.5 956,837 - +0.1 956,851 - -0.4 956,853 + -1.1 956,853 + -1.0 956,853 + +0.8 956,853 + -0.3 956,853 + -0.6 956,853 + -0.0 956,853 + -1.1 956,853 + -1.0 956,853 + -1.3 956,853 + -0.2 956,854 - -0.0 956,854 - -0.3 956,854 - +0.4 956,854 - +0.3 956,854 - -0.4 956,854 - -1.4 956,855 + -0.6 956,855 + -0.1 956,856 - -0.2 956,856 - -1.2 956,856 - -0.9 956,856 - +0.4 956,856 - +0.6 956,856 - -1.2 956,856 - -0.3 956,856 - +0.2 956,856 - -1.2 956,873 + +0.4 956,873 + -1.0 956,873 + -0.1 956,873 + -1.1 956,873 + +0.1 956,873 + +0.4 956,873 + -2.1 956,873 + +0.4 956,874 - -2.4 956,874 - -0.2 956,898 + +0.3 956,977 + -0.4 956,977 + -0.1 956,982 - -1.7 956,982 - -1.4 956,982 - -0.7 956,982 - -0.2 957,211 + DZA65_RS04580 0.43 -0.4 957,211 + DZA65_RS04580 0.43 +0.1 957,211 + DZA65_RS04580 0.43 -0.9 957,212 - DZA65_RS04580 0.43 -0.0 957,212 - DZA65_RS04580 0.43 -0.7 957,212 - DZA65_RS04580 0.43 +0.2 957,212 - DZA65_RS04580 0.43 -0.7 957,212 - DZA65_RS04580 0.43 -0.7 957,212 - DZA65_RS04580 0.43 -1.9 957,212 - DZA65_RS04580 0.43 -0.0 957,226 + DZA65_RS04580 0.45 -0.0 957,226 + DZA65_RS04580 0.45 -0.7 957,227 - +1.0 957,516 + DZA65_RS04580 0.87 +0.6 957,516 + DZA65_RS04580 0.87 +0.3 957,516 + DZA65_RS04580 0.87 -1.4 957,516 + DZA65_RS04580 0.87 -0.7 957,516 + DZA65_RS04580 0.87 +0.8 957,516 + DZA65_RS04580 0.87 +0.4 957,517 - DZA65_RS04580 0.87 -2.1 957,517 - DZA65_RS04580 0.87 -1.4 957,517 - DZA65_RS04580 0.87 -1.6 957,517 - DZA65_RS04580 0.87 -0.3 957,517 - DZA65_RS04580 0.87 +1.2 957,517 - DZA65_RS04580 0.87 -0.4 957,517 - DZA65_RS04580 0.87 +0.4 957,517 - DZA65_RS04580 0.87 -1.3 957,520 + DZA65_RS04580 0.88 +0.3 957,520 + DZA65_RS04580 0.88 +0.1 957,520 + DZA65_RS04580 0.88 -0.0 957,520 + DZA65_RS04580 0.88 -0.4 957,520 + DZA65_RS04580 0.88 +0.4 957,520 + DZA65_RS04580 0.88 -0.3 957,520 + DZA65_RS04580 0.88 -0.3 957,520 + DZA65_RS04580 0.88 +0.2 957,520 + DZA65_RS04580 0.88 -0.3 957,521 - DZA65_RS04580 0.88 +1.2 957,521 - DZA65_RS04580 0.88 -0.2 957,521 - DZA65_RS04580 0.88 -0.3 957,521 - DZA65_RS04580 0.88 +1.0 957,521 - DZA65_RS04580 0.88 -0.4 957,521 - DZA65_RS04580 0.88 +0.8 957,523 - DZA65_RS04580 0.88 -0.7 957,523 - DZA65_RS04580 0.88 -1.4 957,612 - -1.0 957,743 + DZA65_RS04585 0.12 -0.4 957,743 + DZA65_RS04585 0.12 -0.1 957,743 + DZA65_RS04585 0.12 -0.2 957,743 + DZA65_RS04585 0.12 -0.0 957,744 - DZA65_RS04585 0.12 -0.2 957,811 - DZA65_RS04585 0.18 +0.3 957,813 + DZA65_RS04585 0.18 +0.4 957,813 + DZA65_RS04585 0.18 -0.4 957,813 + DZA65_RS04585 0.18 -0.9 957,813 + DZA65_RS04585 0.18 +0.1 957,813 + DZA65_RS04585 0.18 -0.4 958,319 + DZA65_RS04585 0.61 -0.3 958,397 + DZA65_RS04585 0.68 +0.4 958,397 + DZA65_RS04585 0.68 -0.4 958,397 + DZA65_RS04585 0.68 -0.6 958,398 - DZA65_RS04585 0.68 -0.7 958,398 - DZA65_RS04585 0.68 -1.5 958,398 - DZA65_RS04585 0.68 -1.1 958,429 - DZA65_RS04585 0.70 -0.7 958,520 + DZA65_RS04585 0.78 +0.2 958,520 + DZA65_RS04585 0.78 -0.0 958,520 + DZA65_RS04585 0.78 -0.4 958,520 + DZA65_RS04585 0.78 -2.4 958,520 + DZA65_RS04585 0.78 -0.9 958,521 - DZA65_RS04585 0.78 -1.6 958,521 - DZA65_RS04585 0.78 -1.1 958,521 - DZA65_RS04585 0.78 -0.7 958,521 - DZA65_RS04585 0.78 +0.6 958,570 - DZA65_RS04585 0.82 +0.1 958,752 - +3.6 958,873 + -0.5 958,873 + -1.2 958,873 + -1.2 958,873 + +0.3 958,873 + +0.4 958,874 - -1.7 958,874 - +0.4 958,891 - -1.2 958,914 + -2.2 958,914 + +0.1 958,914 + -0.0 958,915 - +0.3 958,915 - -1.2 958,946 + +1.3 958,946 + -1.5 958,947 - -0.6 958,947 - -1.4 958,947 - -1.6 958,947 - -1.4 958,947 - -0.0 959,332 - DZA65_RS04590 0.37 -1.1 959,365 - DZA65_RS04590 0.40 -0.0 959,470 + DZA65_RS04590 0.49 -1.7 959,471 - DZA65_RS04590 0.49 -0.7 959,471 - DZA65_RS04590 0.49 -1.3 959,471 - DZA65_RS04590 0.49 +1.8 959,471 - DZA65_RS04590 0.49 -0.4 959,642 + DZA65_RS04590 0.64 +1.2
Or see this region's nucleotide sequence