Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS04480 and DZA65_RS04485 are separated by 59 nucleotides DZA65_RS04485 and DZA65_RS04490 overlap by 8 nucleotides DZA65_RS04490 and DZA65_RS04495 overlap by 11 nucleotides
DZA65_RS04480: DZA65_RS04480 - LysR family transcriptional regulator, at 934,186 to 935,088
_RS04480
DZA65_RS04485: DZA65_RS04485 - substrate-binding domain-containing protein, at 935,148 to 936,134
_RS04485
DZA65_RS04490: DZA65_RS04490 - ribonuclease Z, at 936,127 to 936,894
_RS04490
DZA65_RS04495: DZA65_RS04495 - ABC transporter ATP-binding protein, at 936,884 to 937,933
_RS04495
Position (kb) 935
936
937 Strain fitness (log2 ratio) -2
-1
0
1
2 at 934.150 kb on - strand at 934.150 kb on - strand at 934.153 kb on + strand at 934.172 kb on - strand at 934.176 kb on - strand at 934.176 kb on - strand at 934.179 kb on + strand at 934.180 kb on - strand at 934.190 kb on + strand at 934.191 kb on - strand at 934.191 kb on - strand at 934.194 kb on + strand at 934.194 kb on + strand at 934.194 kb on + strand at 934.194 kb on + strand at 934.194 kb on + strand at 934.195 kb on - strand at 934.196 kb on + strand at 934.196 kb on + strand at 934.210 kb on + strand at 934.210 kb on + strand at 934.210 kb on + strand at 934.211 kb on - strand at 934.211 kb on - strand at 934.213 kb on + strand at 934.213 kb on + strand at 934.266 kb on + strand at 934.267 kb on - strand at 934.333 kb on - strand, within DZA65_RS04480 at 934.333 kb on - strand, within DZA65_RS04480 at 934.412 kb on - strand, within DZA65_RS04480 at 934.414 kb on + strand, within DZA65_RS04480 at 934.414 kb on + strand, within DZA65_RS04480 at 934.505 kb on - strand, within DZA65_RS04480 at 934.507 kb on + strand, within DZA65_RS04480 at 934.507 kb on + strand, within DZA65_RS04480 at 934.523 kb on + strand, within DZA65_RS04480 at 934.560 kb on + strand, within DZA65_RS04480 at 934.560 kb on + strand, within DZA65_RS04480 at 934.560 kb on + strand, within DZA65_RS04480 at 934.560 kb on + strand, within DZA65_RS04480 at 934.561 kb on - strand, within DZA65_RS04480 at 934.561 kb on - strand, within DZA65_RS04480 at 934.642 kb on + strand, within DZA65_RS04480 at 934.642 kb on + strand, within DZA65_RS04480 at 934.642 kb on + strand, within DZA65_RS04480 at 934.642 kb on + strand, within DZA65_RS04480 at 934.643 kb on - strand, within DZA65_RS04480 at 934.643 kb on - strand, within DZA65_RS04480 at 934.643 kb on - strand, within DZA65_RS04480 at 934.662 kb on + strand, within DZA65_RS04480 at 934.798 kb on + strand, within DZA65_RS04480 at 934.799 kb on - strand, within DZA65_RS04480 at 934.879 kb on - strand, within DZA65_RS04480 at 934.879 kb on - strand, within DZA65_RS04480 at 934.916 kb on + strand, within DZA65_RS04480 at 934.916 kb on + strand, within DZA65_RS04480 at 934.916 kb on + strand, within DZA65_RS04480 at 934.916 kb on + strand, within DZA65_RS04480 at 934.916 kb on + strand, within DZA65_RS04480 at 934.916 kb on + strand, within DZA65_RS04480 at 934.916 kb on + strand, within DZA65_RS04480 at 934.917 kb on - strand, within DZA65_RS04480 at 934.917 kb on - strand, within DZA65_RS04480 at 934.917 kb on - strand, within DZA65_RS04480 at 934.917 kb on - strand, within DZA65_RS04480 at 934.917 kb on - strand at 934.917 kb on - strand, within DZA65_RS04480 at 934.917 kb on - strand, within DZA65_RS04480 at 935.005 kb on + strand at 935.006 kb on - strand at 935.010 kb on + strand at 935.011 kb on - strand at 935.055 kb on + strand at 935.056 kb on - strand at 935.056 kb on - strand at 935.149 kb on + strand at 935.150 kb on - strand at 935.171 kb on + strand at 935.171 kb on + strand at 935.172 kb on - strand at 935.172 kb on - strand at 935.464 kb on + strand, within DZA65_RS04485 at 935.574 kb on - strand, within DZA65_RS04485 at 935.575 kb on + strand, within DZA65_RS04485 at 935.575 kb on + strand, within DZA65_RS04485 at 935.575 kb on + strand, within DZA65_RS04485 at 935.575 kb on + strand, within DZA65_RS04485 at 935.575 kb on + strand, within DZA65_RS04485 at 935.575 kb on + strand, within DZA65_RS04485 at 935.576 kb on - strand, within DZA65_RS04485 at 935.576 kb on - strand, within DZA65_RS04485 at 935.576 kb on - strand, within DZA65_RS04485 at 935.576 kb on - strand, within DZA65_RS04485 at 935.576 kb on - strand, within DZA65_RS04485 at 935.576 kb on - strand, within DZA65_RS04485 at 936.058 kb on + strand at 936.058 kb on + strand at 936.058 kb on + strand at 936.058 kb on + strand at 936.058 kb on + strand at 936.058 kb on + strand at 936.059 kb on - strand at 936.059 kb on - strand at 936.059 kb on - strand at 936.059 kb on - strand at 936.059 kb on - strand at 936.128 kb on + strand at 936.128 kb on + strand at 936.128 kb on + strand at 936.266 kb on + strand, within DZA65_RS04490 at 936.266 kb on + strand, within DZA65_RS04490 at 936.266 kb on + strand, within DZA65_RS04490 at 936.266 kb on + strand, within DZA65_RS04490 at 936.266 kb on + strand, within DZA65_RS04490 at 936.266 kb on + strand, within DZA65_RS04490 at 936.266 kb on + strand, within DZA65_RS04490 at 936.267 kb on - strand, within DZA65_RS04490 at 936.267 kb on - strand, within DZA65_RS04490 at 936.267 kb on - strand, within DZA65_RS04490 at 936.267 kb on - strand, within DZA65_RS04490 at 936.329 kb on + strand, within DZA65_RS04490 at 936.431 kb on + strand, within DZA65_RS04490 at 936.432 kb on - strand, within DZA65_RS04490 at 936.461 kb on + strand, within DZA65_RS04490 at 936.461 kb on + strand at 936.462 kb on - strand, within DZA65_RS04490 at 936.462 kb on - strand, within DZA65_RS04490 at 936.462 kb on - strand, within DZA65_RS04490 at 936.552 kb on + strand, within DZA65_RS04490 at 936.552 kb on + strand, within DZA65_RS04490 at 936.723 kb on + strand, within DZA65_RS04490 at 936.723 kb on + strand, within DZA65_RS04490 at 936.723 kb on + strand, within DZA65_RS04490 at 936.724 kb on - strand, within DZA65_RS04490 at 936.724 kb on - strand, within DZA65_RS04490 at 936.728 kb on + strand, within DZA65_RS04490 at 936.728 kb on + strand, within DZA65_RS04490 at 936.728 kb on + strand, within DZA65_RS04490 at 936.728 kb on + strand, within DZA65_RS04490 at 936.728 kb on + strand, within DZA65_RS04490 at 936.728 kb on + strand, within DZA65_RS04490 at 936.728 kb on + strand, within DZA65_RS04490 at 936.728 kb on + strand, within DZA65_RS04490 at 936.728 kb on + strand, within DZA65_RS04490 at 936.728 kb on + strand, within DZA65_RS04490 at 936.728 kb on + strand, within DZA65_RS04490 at 936.728 kb on + strand, within DZA65_RS04490 at 936.728 kb on + strand, within DZA65_RS04490 at 936.728 kb on + strand, within DZA65_RS04490 at 936.728 kb on + strand, within DZA65_RS04490 at 936.728 kb on + strand, within DZA65_RS04490 at 936.728 kb on + strand, within DZA65_RS04490 at 936.728 kb on + strand, within DZA65_RS04490 at 936.729 kb on - strand at 936.729 kb on - strand, within DZA65_RS04490 at 936.729 kb on - strand, within DZA65_RS04490 at 936.729 kb on - strand, within DZA65_RS04490 at 936.729 kb on - strand, within DZA65_RS04490 at 936.729 kb on - strand, within DZA65_RS04490 at 936.729 kb on - strand at 936.729 kb on - strand, within DZA65_RS04490 at 936.729 kb on - strand, within DZA65_RS04490 at 936.729 kb on - strand, within DZA65_RS04490 at 936.860 kb on + strand at 936.860 kb on + strand at 936.860 kb on + strand at 936.860 kb on + strand at 936.861 kb on - strand at 937.074 kb on + strand, within DZA65_RS04495 at 937.108 kb on + strand, within DZA65_RS04495 at 937.109 kb on - strand, within DZA65_RS04495 at 937.109 kb on - strand, within DZA65_RS04495 at 937.109 kb on - strand, within DZA65_RS04495 at 937.109 kb on - strand, within DZA65_RS04495
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 934,150 - +0.3 934,150 - -0.7 934,153 + +0.8 934,172 - -0.1 934,176 - -1.7 934,176 - -0.2 934,179 + -0.1 934,180 - -1.3 934,190 + -2.6 934,191 - -1.2 934,191 - -1.2 934,194 + -1.0 934,194 + +1.0 934,194 + -1.8 934,194 + -1.2 934,194 + +0.6 934,195 - -2.1 934,196 + -0.4 934,196 + +0.3 934,210 + -1.6 934,210 + -0.8 934,210 + +2.6 934,211 - -2.1 934,211 - -0.0 934,213 + -1.0 934,213 + -1.4 934,266 + +0.1 934,267 - -0.3 934,333 - DZA65_RS04480 0.16 +0.2 934,333 - DZA65_RS04480 0.16 +0.1 934,412 - DZA65_RS04480 0.25 -1.0 934,414 + DZA65_RS04480 0.25 +0.4 934,414 + DZA65_RS04480 0.25 -1.2 934,505 - DZA65_RS04480 0.35 +0.1 934,507 + DZA65_RS04480 0.36 +0.3 934,507 + DZA65_RS04480 0.36 +1.4 934,523 + DZA65_RS04480 0.37 -0.8 934,560 + DZA65_RS04480 0.41 -0.2 934,560 + DZA65_RS04480 0.41 -1.2 934,560 + DZA65_RS04480 0.41 -0.5 934,560 + DZA65_RS04480 0.41 -0.0 934,561 - DZA65_RS04480 0.42 -0.0 934,561 - DZA65_RS04480 0.42 -2.3 934,642 + DZA65_RS04480 0.50 -1.3 934,642 + DZA65_RS04480 0.50 -0.2 934,642 + DZA65_RS04480 0.50 -1.4 934,642 + DZA65_RS04480 0.50 -0.2 934,643 - DZA65_RS04480 0.51 -1.0 934,643 - DZA65_RS04480 0.51 -0.5 934,643 - DZA65_RS04480 0.51 -1.7 934,662 + DZA65_RS04480 0.53 -1.0 934,798 + DZA65_RS04480 0.68 -0.4 934,799 - DZA65_RS04480 0.68 -0.1 934,879 - DZA65_RS04480 0.77 -1.2 934,879 - DZA65_RS04480 0.77 +0.6 934,916 + DZA65_RS04480 0.81 +0.4 934,916 + DZA65_RS04480 0.81 +0.6 934,916 + DZA65_RS04480 0.81 -0.4 934,916 + DZA65_RS04480 0.81 +0.6 934,916 + DZA65_RS04480 0.81 +0.7 934,916 + DZA65_RS04480 0.81 -0.6 934,916 + DZA65_RS04480 0.81 -0.2 934,917 - DZA65_RS04480 0.81 +0.6 934,917 - DZA65_RS04480 0.81 +0.1 934,917 - DZA65_RS04480 0.81 -0.0 934,917 - DZA65_RS04480 0.81 -0.7 934,917 - -0.0 934,917 - DZA65_RS04480 0.81 +1.1 934,917 - DZA65_RS04480 0.81 -0.4 935,005 + -0.7 935,006 - -0.6 935,010 + -0.7 935,011 - -1.1 935,055 + +0.3 935,056 - -0.6 935,056 - -2.4 935,149 + -0.9 935,150 - -1.0 935,171 + +1.4 935,171 + -0.5 935,172 - +1.2 935,172 - -1.0 935,464 + DZA65_RS04485 0.32 -1.1 935,574 - DZA65_RS04485 0.43 -0.0 935,575 + DZA65_RS04485 0.43 -1.7 935,575 + DZA65_RS04485 0.43 -0.4 935,575 + DZA65_RS04485 0.43 -0.4 935,575 + DZA65_RS04485 0.43 -1.6 935,575 + DZA65_RS04485 0.43 -0.4 935,575 + DZA65_RS04485 0.43 -0.8 935,576 - DZA65_RS04485 0.43 -0.7 935,576 - DZA65_RS04485 0.43 +1.4 935,576 - DZA65_RS04485 0.43 +0.4 935,576 - DZA65_RS04485 0.43 -0.5 935,576 - DZA65_RS04485 0.43 -0.9 935,576 - DZA65_RS04485 0.43 -1.7 936,058 + +1.2 936,058 + -0.7 936,058 + -0.0 936,058 + -0.5 936,058 + +0.2 936,058 + +0.2 936,059 - -0.2 936,059 - -1.9 936,059 - -1.7 936,059 - +0.6 936,059 - +0.6 936,128 + +1.7 936,128 + -0.0 936,128 + -0.1 936,266 + DZA65_RS04490 0.18 +2.0 936,266 + DZA65_RS04490 0.18 -1.7 936,266 + DZA65_RS04490 0.18 -0.2 936,266 + DZA65_RS04490 0.18 -0.4 936,266 + DZA65_RS04490 0.18 +1.0 936,266 + DZA65_RS04490 0.18 -1.5 936,266 + DZA65_RS04490 0.18 -1.2 936,267 - DZA65_RS04490 0.18 -0.5 936,267 - DZA65_RS04490 0.18 +0.6 936,267 - DZA65_RS04490 0.18 -1.9 936,267 - DZA65_RS04490 0.18 -2.4 936,329 + DZA65_RS04490 0.26 -1.0 936,431 + DZA65_RS04490 0.40 -0.4 936,432 - DZA65_RS04490 0.40 +0.6 936,461 + DZA65_RS04490 0.43 -2.5 936,461 + +0.6 936,462 - DZA65_RS04490 0.44 +1.2 936,462 - DZA65_RS04490 0.44 -0.4 936,462 - DZA65_RS04490 0.44 -1.6 936,552 + DZA65_RS04490 0.55 -1.7 936,552 + DZA65_RS04490 0.55 -1.4 936,723 + DZA65_RS04490 0.78 -0.7 936,723 + DZA65_RS04490 0.78 -0.4 936,723 + DZA65_RS04490 0.78 -0.8 936,724 - DZA65_RS04490 0.78 -0.9 936,724 - DZA65_RS04490 0.78 +0.4 936,728 + DZA65_RS04490 0.78 -0.5 936,728 + DZA65_RS04490 0.78 -1.6 936,728 + DZA65_RS04490 0.78 -0.2 936,728 + DZA65_RS04490 0.78 +0.3 936,728 + DZA65_RS04490 0.78 -0.0 936,728 + DZA65_RS04490 0.78 +0.4 936,728 + DZA65_RS04490 0.78 -1.2 936,728 + DZA65_RS04490 0.78 +0.1 936,728 + DZA65_RS04490 0.78 -0.1 936,728 + DZA65_RS04490 0.78 -0.3 936,728 + DZA65_RS04490 0.78 +1.4 936,728 + DZA65_RS04490 0.78 +0.4 936,728 + DZA65_RS04490 0.78 -0.9 936,728 + DZA65_RS04490 0.78 -0.7 936,728 + DZA65_RS04490 0.78 -2.2 936,728 + DZA65_RS04490 0.78 -1.4 936,728 + DZA65_RS04490 0.78 -0.4 936,728 + DZA65_RS04490 0.78 -0.3 936,729 - +1.0 936,729 - DZA65_RS04490 0.78 +0.6 936,729 - DZA65_RS04490 0.78 -0.4 936,729 - DZA65_RS04490 0.78 +1.0 936,729 - DZA65_RS04490 0.78 +0.6 936,729 - DZA65_RS04490 0.78 -0.2 936,729 - -0.0 936,729 - DZA65_RS04490 0.78 -1.0 936,729 - DZA65_RS04490 0.78 -0.6 936,729 - DZA65_RS04490 0.78 +0.5 936,860 + +1.0 936,860 + -0.2 936,860 + +0.1 936,860 + -0.7 936,861 - -0.8 937,074 + DZA65_RS04495 0.18 -1.2 937,108 + DZA65_RS04495 0.21 +0.3 937,109 - DZA65_RS04495 0.21 -2.2 937,109 - DZA65_RS04495 0.21 -0.7 937,109 - DZA65_RS04495 0.21 -0.0 937,109 - DZA65_RS04495 0.21 -0.4
Or see this region's nucleotide sequence