Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS04465 and DZA65_RS04475 are separated by 865 nucleotides DZA65_RS04475 and DZA65_RS04480 are separated by 188 nucleotides
DZA65_RS04465: DZA65_RS04465 - 4Fe-4S dicluster domain-containing protein, at 931,459 to 932,157
_RS04465
DZA65_RS04475: DZA65_RS04475 - alpha/beta hydrolase, at 933,023 to 933,997
_RS04475
DZA65_RS04480: DZA65_RS04480 - LysR family transcriptional regulator, at 934,186 to 935,088
_RS04480
Position (kb) 933
934 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 932.023 kb on + strand, within DZA65_RS04465 at 932.024 kb on - strand, within DZA65_RS04465 at 932.024 kb on - strand, within DZA65_RS04465 at 932.024 kb on - strand, within DZA65_RS04465 at 932.030 kb on + strand, within DZA65_RS04465 at 932.031 kb on - strand, within DZA65_RS04465 at 932.031 kb on - strand, within DZA65_RS04465 at 932.131 kb on - strand at 932.162 kb on + strand at 932.163 kb on - strand at 932.215 kb on + strand at 932.346 kb on - strand at 932.373 kb on - strand at 932.429 kb on + strand at 932.434 kb on + strand at 932.677 kb on + strand at 932.677 kb on + strand at 932.677 kb on + strand at 932.677 kb on + strand at 932.677 kb on + strand at 932.677 kb on + strand at 932.678 kb on - strand at 932.678 kb on - strand at 932.678 kb on - strand at 932.846 kb on + strand at 932.846 kb on + strand at 932.847 kb on - strand at 932.882 kb on - strand at 932.934 kb on - strand at 932.961 kb on + strand at 932.962 kb on - strand at 932.962 kb on - strand at 932.962 kb on - strand at 932.965 kb on + strand at 932.965 kb on + strand at 932.965 kb on + strand at 932.965 kb on + strand at 932.966 kb on - strand at 932.966 kb on - strand at 932.966 kb on - strand at 932.966 kb on - strand at 932.966 kb on - strand at 932.966 kb on - strand at 932.966 kb on - strand at 932.987 kb on + strand at 933.024 kb on + strand at 933.025 kb on - strand at 933.081 kb on - strand at 933.120 kb on + strand at 933.120 kb on + strand at 933.120 kb on + strand at 933.120 kb on + strand at 933.120 kb on + strand at 933.120 kb on + strand at 933.120 kb on + strand at 933.120 kb on + strand at 933.120 kb on + strand at 933.121 kb on - strand at 933.121 kb on - strand, within DZA65_RS04475 at 933.121 kb on - strand, within DZA65_RS04475 at 933.121 kb on - strand, within DZA65_RS04475 at 933.121 kb on - strand, within DZA65_RS04475 at 933.123 kb on + strand, within DZA65_RS04475 at 933.123 kb on + strand, within DZA65_RS04475 at 933.123 kb on + strand, within DZA65_RS04475 at 933.123 kb on + strand, within DZA65_RS04475 at 933.123 kb on + strand, within DZA65_RS04475 at 933.124 kb on - strand, within DZA65_RS04475 at 933.124 kb on - strand, within DZA65_RS04475 at 933.124 kb on - strand at 933.124 kb on - strand, within DZA65_RS04475 at 933.124 kb on - strand, within DZA65_RS04475 at 933.124 kb on - strand, within DZA65_RS04475 at 933.124 kb on - strand, within DZA65_RS04475 at 933.124 kb on - strand, within DZA65_RS04475 at 933.124 kb on - strand, within DZA65_RS04475 at 933.124 kb on - strand, within DZA65_RS04475 at 933.211 kb on + strand, within DZA65_RS04475 at 933.211 kb on + strand, within DZA65_RS04475 at 933.211 kb on + strand, within DZA65_RS04475 at 933.211 kb on + strand, within DZA65_RS04475 at 933.212 kb on - strand, within DZA65_RS04475 at 933.212 kb on - strand, within DZA65_RS04475 at 933.215 kb on + strand, within DZA65_RS04475 at 933.215 kb on + strand, within DZA65_RS04475 at 933.215 kb on + strand, within DZA65_RS04475 at 933.215 kb on + strand, within DZA65_RS04475 at 933.215 kb on + strand, within DZA65_RS04475 at 933.216 kb on - strand, within DZA65_RS04475 at 933.241 kb on + strand, within DZA65_RS04475 at 933.241 kb on + strand, within DZA65_RS04475 at 933.241 kb on + strand, within DZA65_RS04475 at 933.241 kb on + strand, within DZA65_RS04475 at 933.241 kb on + strand at 933.242 kb on - strand, within DZA65_RS04475 at 933.242 kb on - strand, within DZA65_RS04475 at 933.242 kb on - strand, within DZA65_RS04475 at 933.242 kb on - strand, within DZA65_RS04475 at 933.242 kb on - strand, within DZA65_RS04475 at 933.242 kb on - strand, within DZA65_RS04475 at 933.243 kb on + strand, within DZA65_RS04475 at 933.243 kb on + strand, within DZA65_RS04475 at 933.243 kb on + strand, within DZA65_RS04475 at 933.243 kb on + strand, within DZA65_RS04475 at 933.243 kb on + strand, within DZA65_RS04475 at 933.243 kb on + strand, within DZA65_RS04475 at 933.243 kb on + strand, within DZA65_RS04475 at 933.243 kb on + strand, within DZA65_RS04475 at 933.243 kb on + strand, within DZA65_RS04475 at 933.243 kb on + strand, within DZA65_RS04475 at 933.244 kb on - strand, within DZA65_RS04475 at 933.244 kb on - strand, within DZA65_RS04475 at 933.244 kb on - strand, within DZA65_RS04475 at 933.244 kb on - strand, within DZA65_RS04475 at 933.244 kb on - strand, within DZA65_RS04475 at 933.244 kb on - strand, within DZA65_RS04475 at 933.244 kb on - strand, within DZA65_RS04475 at 933.286 kb on + strand, within DZA65_RS04475 at 933.286 kb on + strand, within DZA65_RS04475 at 933.308 kb on + strand, within DZA65_RS04475 at 933.331 kb on + strand, within DZA65_RS04475 at 933.331 kb on + strand, within DZA65_RS04475 at 933.331 kb on + strand, within DZA65_RS04475 at 933.331 kb on + strand, within DZA65_RS04475 at 933.331 kb on + strand, within DZA65_RS04475 at 933.332 kb on - strand, within DZA65_RS04475 at 933.332 kb on - strand, within DZA65_RS04475 at 933.332 kb on - strand, within DZA65_RS04475 at 933.332 kb on - strand, within DZA65_RS04475 at 933.365 kb on + strand, within DZA65_RS04475 at 933.365 kb on + strand, within DZA65_RS04475 at 933.366 kb on - strand, within DZA65_RS04475 at 933.366 kb on - strand, within DZA65_RS04475 at 933.417 kb on + strand, within DZA65_RS04475 at 933.417 kb on + strand, within DZA65_RS04475 at 933.418 kb on - strand, within DZA65_RS04475 at 933.517 kb on - strand, within DZA65_RS04475 at 933.571 kb on + strand, within DZA65_RS04475 at 933.572 kb on - strand, within DZA65_RS04475 at 933.592 kb on - strand, within DZA65_RS04475 at 933.671 kb on + strand, within DZA65_RS04475 at 933.671 kb on + strand, within DZA65_RS04475 at 933.671 kb on + strand, within DZA65_RS04475 at 933.672 kb on - strand, within DZA65_RS04475 at 933.675 kb on + strand, within DZA65_RS04475 at 933.711 kb on + strand, within DZA65_RS04475 at 933.712 kb on - strand, within DZA65_RS04475 at 933.712 kb on - strand, within DZA65_RS04475 at 933.712 kb on - strand, within DZA65_RS04475 at 933.751 kb on + strand, within DZA65_RS04475 at 933.751 kb on + strand, within DZA65_RS04475 at 933.751 kb on + strand, within DZA65_RS04475 at 933.751 kb on + strand, within DZA65_RS04475 at 933.752 kb on - strand, within DZA65_RS04475 at 933.752 kb on - strand, within DZA65_RS04475 at 933.752 kb on - strand, within DZA65_RS04475 at 933.847 kb on - strand, within DZA65_RS04475 at 933.847 kb on - strand, within DZA65_RS04475 at 933.847 kb on - strand, within DZA65_RS04475 at 933.925 kb on + strand at 933.926 kb on - strand at 933.926 kb on - strand at 933.926 kb on - strand at 933.955 kb on + strand at 933.965 kb on + strand at 933.966 kb on - strand at 933.992 kb on - strand at 934.003 kb on - strand at 934.016 kb on - strand at 934.021 kb on + strand at 934.021 kb on + strand at 934.022 kb on - strand at 934.043 kb on + strand at 934.055 kb on + strand at 934.055 kb on + strand at 934.055 kb on + strand at 934.055 kb on + strand at 934.056 kb on - strand at 934.061 kb on + strand at 934.061 kb on + strand at 934.061 kb on + strand at 934.061 kb on + strand at 934.062 kb on - strand at 934.117 kb on + strand at 934.129 kb on - strand at 934.147 kb on + strand at 934.150 kb on - strand at 934.150 kb on - strand at 934.153 kb on + strand at 934.172 kb on - strand at 934.176 kb on - strand at 934.176 kb on - strand at 934.179 kb on + strand at 934.180 kb on - strand at 934.190 kb on + strand at 934.191 kb on - strand at 934.191 kb on - strand at 934.194 kb on + strand at 934.194 kb on + strand at 934.194 kb on + strand at 934.194 kb on + strand at 934.194 kb on + strand at 934.195 kb on - strand at 934.196 kb on + strand at 934.196 kb on + strand at 934.210 kb on + strand at 934.210 kb on + strand at 934.210 kb on + strand at 934.211 kb on - strand at 934.211 kb on - strand at 934.213 kb on + strand at 934.213 kb on + strand at 934.266 kb on + strand at 934.267 kb on - strand at 934.333 kb on - strand, within DZA65_RS04480 at 934.333 kb on - strand, within DZA65_RS04480 at 934.412 kb on - strand, within DZA65_RS04480 at 934.414 kb on + strand, within DZA65_RS04480 at 934.414 kb on + strand, within DZA65_RS04480 at 934.505 kb on - strand, within DZA65_RS04480 at 934.507 kb on + strand, within DZA65_RS04480 at 934.507 kb on + strand, within DZA65_RS04480 at 934.523 kb on + strand, within DZA65_RS04480 at 934.560 kb on + strand, within DZA65_RS04480 at 934.560 kb on + strand, within DZA65_RS04480 at 934.560 kb on + strand, within DZA65_RS04480 at 934.560 kb on + strand, within DZA65_RS04480 at 934.561 kb on - strand, within DZA65_RS04480 at 934.561 kb on - strand, within DZA65_RS04480 at 934.642 kb on + strand, within DZA65_RS04480 at 934.642 kb on + strand, within DZA65_RS04480 at 934.642 kb on + strand, within DZA65_RS04480 at 934.642 kb on + strand, within DZA65_RS04480 at 934.643 kb on - strand, within DZA65_RS04480 at 934.643 kb on - strand, within DZA65_RS04480 at 934.643 kb on - strand, within DZA65_RS04480 at 934.662 kb on + strand, within DZA65_RS04480 at 934.798 kb on + strand, within DZA65_RS04480 at 934.799 kb on - strand, within DZA65_RS04480 at 934.879 kb on - strand, within DZA65_RS04480 at 934.879 kb on - strand, within DZA65_RS04480 at 934.916 kb on + strand, within DZA65_RS04480 at 934.916 kb on + strand, within DZA65_RS04480 at 934.916 kb on + strand, within DZA65_RS04480 at 934.916 kb on + strand, within DZA65_RS04480 at 934.916 kb on + strand, within DZA65_RS04480 at 934.916 kb on + strand, within DZA65_RS04480 at 934.916 kb on + strand, within DZA65_RS04480 at 934.917 kb on - strand, within DZA65_RS04480 at 934.917 kb on - strand, within DZA65_RS04480 at 934.917 kb on - strand, within DZA65_RS04480 at 934.917 kb on - strand, within DZA65_RS04480 at 934.917 kb on - strand at 934.917 kb on - strand, within DZA65_RS04480 at 934.917 kb on - strand, within DZA65_RS04480
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 932,023 + DZA65_RS04465 0.81 -1.9 932,024 - DZA65_RS04465 0.81 -0.0 932,024 - DZA65_RS04465 0.81 -1.1 932,024 - DZA65_RS04465 0.81 -1.6 932,030 + DZA65_RS04465 0.82 -1.3 932,031 - DZA65_RS04465 0.82 -0.0 932,031 - DZA65_RS04465 0.82 -0.4 932,131 - -1.7 932,162 + +1.4 932,163 - -1.1 932,215 + -0.7 932,346 - +0.8 932,373 - -0.3 932,429 + -0.2 932,434 + -2.4 932,677 + +0.7 932,677 + +0.8 932,677 + +0.8 932,677 + +1.1 932,677 + -0.7 932,677 + +0.1 932,678 - -0.2 932,678 - -1.1 932,678 - -1.2 932,846 + -1.7 932,846 + -0.5 932,847 - -0.0 932,882 - -1.7 932,934 - -0.4 932,961 + -0.4 932,962 - -2.0 932,962 - -0.5 932,962 - +0.8 932,965 + -0.4 932,965 + -1.0 932,965 + +0.6 932,965 + -0.2 932,966 - -0.0 932,966 - -0.0 932,966 - -1.1 932,966 - -0.8 932,966 - -0.6 932,966 - -1.4 932,966 - +0.2 932,987 + -0.4 933,024 + -0.6 933,025 - -1.2 933,081 - +0.4 933,120 + -1.2 933,120 + -0.2 933,120 + -0.7 933,120 + -0.3 933,120 + +1.4 933,120 + -0.7 933,120 + +0.6 933,120 + -0.4 933,120 + +0.5 933,121 - +1.2 933,121 - DZA65_RS04475 0.10 +0.6 933,121 - DZA65_RS04475 0.10 -0.7 933,121 - DZA65_RS04475 0.10 -0.4 933,121 - DZA65_RS04475 0.10 -0.1 933,123 + DZA65_RS04475 0.10 -0.4 933,123 + DZA65_RS04475 0.10 -0.2 933,123 + DZA65_RS04475 0.10 +0.4 933,123 + DZA65_RS04475 0.10 -0.1 933,123 + DZA65_RS04475 0.10 -2.7 933,124 - DZA65_RS04475 0.10 +0.8 933,124 - DZA65_RS04475 0.10 -1.2 933,124 - +3.6 933,124 - DZA65_RS04475 0.10 +2.2 933,124 - DZA65_RS04475 0.10 -2.1 933,124 - DZA65_RS04475 0.10 -2.7 933,124 - DZA65_RS04475 0.10 -0.3 933,124 - DZA65_RS04475 0.10 -1.6 933,124 - DZA65_RS04475 0.10 -1.3 933,124 - DZA65_RS04475 0.10 -1.2 933,211 + DZA65_RS04475 0.19 -0.4 933,211 + DZA65_RS04475 0.19 -0.7 933,211 + DZA65_RS04475 0.19 -1.0 933,211 + DZA65_RS04475 0.19 -1.0 933,212 - DZA65_RS04475 0.19 -0.7 933,212 - DZA65_RS04475 0.19 -0.0 933,215 + DZA65_RS04475 0.20 -0.0 933,215 + DZA65_RS04475 0.20 -1.2 933,215 + DZA65_RS04475 0.20 +0.6 933,215 + DZA65_RS04475 0.20 +2.2 933,215 + DZA65_RS04475 0.20 +0.5 933,216 - DZA65_RS04475 0.20 -0.2 933,241 + DZA65_RS04475 0.22 -0.0 933,241 + DZA65_RS04475 0.22 -1.2 933,241 + DZA65_RS04475 0.22 -0.9 933,241 + DZA65_RS04475 0.22 +0.2 933,241 + +1.0 933,242 - DZA65_RS04475 0.22 +0.3 933,242 - DZA65_RS04475 0.22 +1.1 933,242 - DZA65_RS04475 0.22 +0.4 933,242 - DZA65_RS04475 0.22 +1.3 933,242 - DZA65_RS04475 0.22 -0.7 933,242 - DZA65_RS04475 0.22 +0.4 933,243 + DZA65_RS04475 0.23 -0.5 933,243 + DZA65_RS04475 0.23 +0.3 933,243 + DZA65_RS04475 0.23 -1.0 933,243 + DZA65_RS04475 0.23 -1.6 933,243 + DZA65_RS04475 0.23 +1.6 933,243 + DZA65_RS04475 0.23 +1.3 933,243 + DZA65_RS04475 0.23 -1.7 933,243 + DZA65_RS04475 0.23 +0.9 933,243 + DZA65_RS04475 0.23 -0.0 933,243 + DZA65_RS04475 0.23 -0.0 933,244 - DZA65_RS04475 0.23 -1.0 933,244 - DZA65_RS04475 0.23 +0.8 933,244 - DZA65_RS04475 0.23 -1.1 933,244 - DZA65_RS04475 0.23 -1.7 933,244 - DZA65_RS04475 0.23 +0.2 933,244 - DZA65_RS04475 0.23 -0.0 933,244 - DZA65_RS04475 0.23 -0.7 933,286 + DZA65_RS04475 0.27 -0.8 933,286 + DZA65_RS04475 0.27 -0.4 933,308 + DZA65_RS04475 0.29 +1.8 933,331 + DZA65_RS04475 0.32 -2.4 933,331 + DZA65_RS04475 0.32 -1.2 933,331 + DZA65_RS04475 0.32 +0.4 933,331 + DZA65_RS04475 0.32 -0.0 933,331 + DZA65_RS04475 0.32 +0.3 933,332 - DZA65_RS04475 0.32 -1.7 933,332 - DZA65_RS04475 0.32 -1.2 933,332 - DZA65_RS04475 0.32 +1.6 933,332 - DZA65_RS04475 0.32 -0.2 933,365 + DZA65_RS04475 0.35 -1.2 933,365 + DZA65_RS04475 0.35 -0.2 933,366 - DZA65_RS04475 0.35 -0.2 933,366 - DZA65_RS04475 0.35 +0.4 933,417 + DZA65_RS04475 0.40 -0.0 933,417 + DZA65_RS04475 0.40 +0.2 933,418 - DZA65_RS04475 0.41 -1.1 933,517 - DZA65_RS04475 0.51 -0.3 933,571 + DZA65_RS04475 0.56 -1.9 933,572 - DZA65_RS04475 0.56 +0.2 933,592 - DZA65_RS04475 0.58 -0.2 933,671 + DZA65_RS04475 0.66 -0.2 933,671 + DZA65_RS04475 0.66 -1.2 933,671 + DZA65_RS04475 0.66 +0.1 933,672 - DZA65_RS04475 0.67 -0.3 933,675 + DZA65_RS04475 0.67 -0.0 933,711 + DZA65_RS04475 0.71 -1.4 933,712 - DZA65_RS04475 0.71 +0.8 933,712 - DZA65_RS04475 0.71 +0.8 933,712 - DZA65_RS04475 0.71 -1.9 933,751 + DZA65_RS04475 0.75 -0.3 933,751 + DZA65_RS04475 0.75 -0.1 933,751 + DZA65_RS04475 0.75 +0.9 933,751 + DZA65_RS04475 0.75 -0.6 933,752 - DZA65_RS04475 0.75 +0.3 933,752 - DZA65_RS04475 0.75 -0.0 933,752 - DZA65_RS04475 0.75 +0.6 933,847 - DZA65_RS04475 0.85 -1.0 933,847 - DZA65_RS04475 0.85 -1.9 933,847 - DZA65_RS04475 0.85 -0.3 933,925 + +0.4 933,926 - -0.7 933,926 - +0.3 933,926 - -0.4 933,955 + -0.4 933,965 + -1.7 933,966 - -0.0 933,992 - -1.0 934,003 - +0.6 934,016 - +0.3 934,021 + +0.5 934,021 + -0.9 934,022 - -0.7 934,043 + +0.1 934,055 + -0.9 934,055 + -0.7 934,055 + +1.1 934,055 + -0.0 934,056 - -0.2 934,061 + +0.8 934,061 + +0.6 934,061 + -0.2 934,061 + +0.1 934,062 - -0.1 934,117 + +0.4 934,129 - +1.6 934,147 + -0.2 934,150 - +0.3 934,150 - -0.7 934,153 + +0.8 934,172 - -0.1 934,176 - -1.7 934,176 - -0.2 934,179 + -0.1 934,180 - -1.3 934,190 + -2.6 934,191 - -1.2 934,191 - -1.2 934,194 + -1.0 934,194 + +1.0 934,194 + -1.8 934,194 + -1.2 934,194 + +0.6 934,195 - -2.1 934,196 + -0.4 934,196 + +0.3 934,210 + -1.6 934,210 + -0.8 934,210 + +2.6 934,211 - -2.1 934,211 - -0.0 934,213 + -1.0 934,213 + -1.4 934,266 + +0.1 934,267 - -0.3 934,333 - DZA65_RS04480 0.16 +0.2 934,333 - DZA65_RS04480 0.16 +0.1 934,412 - DZA65_RS04480 0.25 -1.0 934,414 + DZA65_RS04480 0.25 +0.4 934,414 + DZA65_RS04480 0.25 -1.2 934,505 - DZA65_RS04480 0.35 +0.1 934,507 + DZA65_RS04480 0.36 +0.3 934,507 + DZA65_RS04480 0.36 +1.4 934,523 + DZA65_RS04480 0.37 -0.8 934,560 + DZA65_RS04480 0.41 -0.2 934,560 + DZA65_RS04480 0.41 -1.2 934,560 + DZA65_RS04480 0.41 -0.5 934,560 + DZA65_RS04480 0.41 -0.0 934,561 - DZA65_RS04480 0.42 -0.0 934,561 - DZA65_RS04480 0.42 -2.3 934,642 + DZA65_RS04480 0.50 -1.3 934,642 + DZA65_RS04480 0.50 -0.2 934,642 + DZA65_RS04480 0.50 -1.4 934,642 + DZA65_RS04480 0.50 -0.2 934,643 - DZA65_RS04480 0.51 -1.0 934,643 - DZA65_RS04480 0.51 -0.5 934,643 - DZA65_RS04480 0.51 -1.7 934,662 + DZA65_RS04480 0.53 -1.0 934,798 + DZA65_RS04480 0.68 -0.4 934,799 - DZA65_RS04480 0.68 -0.1 934,879 - DZA65_RS04480 0.77 -1.2 934,879 - DZA65_RS04480 0.77 +0.6 934,916 + DZA65_RS04480 0.81 +0.4 934,916 + DZA65_RS04480 0.81 +0.6 934,916 + DZA65_RS04480 0.81 -0.4 934,916 + DZA65_RS04480 0.81 +0.6 934,916 + DZA65_RS04480 0.81 +0.7 934,916 + DZA65_RS04480 0.81 -0.6 934,916 + DZA65_RS04480 0.81 -0.2 934,917 - DZA65_RS04480 0.81 +0.6 934,917 - DZA65_RS04480 0.81 +0.1 934,917 - DZA65_RS04480 0.81 -0.0 934,917 - DZA65_RS04480 0.81 -0.7 934,917 - -0.0 934,917 - DZA65_RS04480 0.81 +1.1 934,917 - DZA65_RS04480 0.81 -0.4
Or see this region's nucleotide sequence