Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS04455 and DZA65_RS04460 are separated by 2 nucleotides DZA65_RS04460 and DZA65_RS04465 overlap by 8 nucleotides DZA65_RS04465 and DZA65_RS04475 are separated by 865 nucleotides
DZA65_RS04455: DZA65_RS04455 - MFS transporter, at 929,128 to 930,507
_RS04455
DZA65_RS04460: DZA65_RS04460 - cytochrome c nitrite reductase subunit NrfD, at 930,510 to 931,466
_RS04460
DZA65_RS04465: DZA65_RS04465 - 4Fe-4S dicluster domain-containing protein, at 931,459 to 932,157
_RS04465
DZA65_RS04475: DZA65_RS04475 - alpha/beta hydrolase, at 933,023 to 933,997
_RS04475
Position (kb) 931
932
933 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 930.459 kb on + strand at 930.535 kb on + strand at 930.536 kb on - strand at 930.536 kb on - strand at 930.536 kb on - strand at 930.561 kb on + strand at 930.561 kb on + strand at 930.561 kb on + strand at 930.561 kb on + strand at 930.562 kb on - strand at 930.562 kb on - strand at 930.562 kb on - strand at 930.562 kb on - strand at 930.562 kb on - strand at 930.562 kb on - strand at 930.562 kb on - strand at 930.601 kb on + strand at 930.602 kb on - strand at 930.656 kb on + strand, within DZA65_RS04460 at 930.657 kb on - strand, within DZA65_RS04460 at 930.672 kb on - strand, within DZA65_RS04460 at 930.672 kb on - strand, within DZA65_RS04460 at 930.792 kb on + strand, within DZA65_RS04460 at 930.793 kb on - strand, within DZA65_RS04460 at 930.793 kb on - strand, within DZA65_RS04460 at 930.980 kb on + strand, within DZA65_RS04460 at 930.980 kb on + strand, within DZA65_RS04460 at 930.982 kb on + strand, within DZA65_RS04460 at 930.982 kb on + strand, within DZA65_RS04460 at 930.982 kb on + strand, within DZA65_RS04460 at 930.983 kb on - strand, within DZA65_RS04460 at 931.035 kb on - strand, within DZA65_RS04460 at 931.035 kb on - strand, within DZA65_RS04460 at 931.056 kb on + strand, within DZA65_RS04460 at 931.056 kb on + strand, within DZA65_RS04460 at 931.127 kb on - strand, within DZA65_RS04460 at 931.162 kb on + strand, within DZA65_RS04460 at 931.162 kb on + strand, within DZA65_RS04460 at 931.162 kb on + strand, within DZA65_RS04460 at 931.162 kb on + strand, within DZA65_RS04460 at 931.162 kb on + strand, within DZA65_RS04460 at 931.162 kb on + strand, within DZA65_RS04460 at 931.162 kb on + strand, within DZA65_RS04460 at 931.162 kb on + strand, within DZA65_RS04460 at 931.162 kb on + strand, within DZA65_RS04460 at 931.162 kb on + strand, within DZA65_RS04460 at 931.163 kb on - strand, within DZA65_RS04460 at 931.163 kb on - strand, within DZA65_RS04460 at 931.163 kb on - strand, within DZA65_RS04460 at 931.163 kb on - strand, within DZA65_RS04460 at 931.163 kb on - strand, within DZA65_RS04460 at 931.163 kb on - strand, within DZA65_RS04460 at 931.163 kb on - strand, within DZA65_RS04460 at 931.163 kb on - strand, within DZA65_RS04460 at 931.163 kb on - strand, within DZA65_RS04460 at 931.211 kb on - strand, within DZA65_RS04460 at 931.211 kb on - strand, within DZA65_RS04460 at 931.211 kb on - strand, within DZA65_RS04460 at 931.225 kb on + strand, within DZA65_RS04460 at 931.226 kb on - strand, within DZA65_RS04460 at 931.226 kb on - strand, within DZA65_RS04460 at 931.226 kb on - strand, within DZA65_RS04460 at 931.226 kb on - strand, within DZA65_RS04460 at 931.278 kb on + strand, within DZA65_RS04460 at 931.328 kb on + strand, within DZA65_RS04460 at 931.328 kb on + strand, within DZA65_RS04460 at 931.328 kb on + strand, within DZA65_RS04460 at 931.328 kb on + strand, within DZA65_RS04460 at 931.329 kb on - strand, within DZA65_RS04460 at 931.329 kb on - strand, within DZA65_RS04460 at 931.329 kb on - strand, within DZA65_RS04460 at 931.351 kb on + strand, within DZA65_RS04460 at 931.411 kb on + strand at 931.411 kb on + strand at 931.412 kb on - strand at 931.412 kb on - strand at 931.434 kb on + strand at 931.481 kb on + strand at 931.482 kb on - strand at 931.523 kb on + strand at 931.523 kb on + strand at 931.538 kb on + strand, within DZA65_RS04465 at 931.539 kb on - strand, within DZA65_RS04465 at 931.539 kb on - strand, within DZA65_RS04465 at 931.539 kb on - strand, within DZA65_RS04465 at 931.539 kb on - strand, within DZA65_RS04465 at 931.542 kb on + strand, within DZA65_RS04465 at 931.542 kb on + strand, within DZA65_RS04465 at 931.542 kb on + strand, within DZA65_RS04465 at 931.543 kb on - strand, within DZA65_RS04465 at 931.543 kb on - strand, within DZA65_RS04465 at 931.543 kb on - strand, within DZA65_RS04465 at 931.543 kb on - strand, within DZA65_RS04465 at 931.543 kb on - strand, within DZA65_RS04465 at 931.543 kb on - strand, within DZA65_RS04465 at 931.588 kb on - strand, within DZA65_RS04465 at 931.677 kb on + strand, within DZA65_RS04465 at 931.677 kb on + strand, within DZA65_RS04465 at 931.678 kb on - strand, within DZA65_RS04465 at 931.678 kb on - strand, within DZA65_RS04465 at 931.678 kb on - strand, within DZA65_RS04465 at 931.683 kb on + strand, within DZA65_RS04465 at 931.683 kb on + strand, within DZA65_RS04465 at 931.684 kb on - strand, within DZA65_RS04465 at 931.684 kb on - strand, within DZA65_RS04465 at 931.684 kb on - strand, within DZA65_RS04465 at 931.710 kb on + strand, within DZA65_RS04465 at 931.710 kb on + strand, within DZA65_RS04465 at 931.724 kb on + strand, within DZA65_RS04465 at 931.745 kb on + strand, within DZA65_RS04465 at 931.890 kb on + strand, within DZA65_RS04465 at 931.890 kb on + strand, within DZA65_RS04465 at 931.891 kb on - strand, within DZA65_RS04465 at 931.924 kb on + strand, within DZA65_RS04465 at 931.924 kb on + strand, within DZA65_RS04465 at 931.924 kb on + strand, within DZA65_RS04465 at 931.924 kb on + strand, within DZA65_RS04465 at 931.924 kb on + strand, within DZA65_RS04465 at 931.924 kb on + strand, within DZA65_RS04465 at 931.924 kb on + strand, within DZA65_RS04465 at 931.925 kb on - strand, within DZA65_RS04465 at 931.925 kb on - strand, within DZA65_RS04465 at 931.925 kb on - strand, within DZA65_RS04465 at 931.925 kb on - strand, within DZA65_RS04465 at 931.925 kb on - strand, within DZA65_RS04465 at 931.925 kb on - strand, within DZA65_RS04465 at 931.925 kb on - strand, within DZA65_RS04465 at 931.925 kb on - strand, within DZA65_RS04465 at 931.925 kb on - strand, within DZA65_RS04465 at 931.929 kb on + strand, within DZA65_RS04465 at 931.929 kb on + strand, within DZA65_RS04465 at 931.929 kb on + strand, within DZA65_RS04465 at 932.008 kb on + strand, within DZA65_RS04465 at 932.008 kb on + strand, within DZA65_RS04465 at 932.009 kb on - strand, within DZA65_RS04465 at 932.009 kb on - strand, within DZA65_RS04465 at 932.009 kb on - strand, within DZA65_RS04465 at 932.009 kb on - strand, within DZA65_RS04465 at 932.016 kb on + strand, within DZA65_RS04465 at 932.023 kb on + strand, within DZA65_RS04465 at 932.024 kb on - strand, within DZA65_RS04465 at 932.024 kb on - strand, within DZA65_RS04465 at 932.024 kb on - strand, within DZA65_RS04465 at 932.030 kb on + strand, within DZA65_RS04465 at 932.031 kb on - strand, within DZA65_RS04465 at 932.031 kb on - strand, within DZA65_RS04465 at 932.131 kb on - strand at 932.162 kb on + strand at 932.163 kb on - strand at 932.215 kb on + strand at 932.346 kb on - strand at 932.373 kb on - strand at 932.429 kb on + strand at 932.434 kb on + strand at 932.677 kb on + strand at 932.677 kb on + strand at 932.677 kb on + strand at 932.677 kb on + strand at 932.677 kb on + strand at 932.677 kb on + strand at 932.678 kb on - strand at 932.678 kb on - strand at 932.678 kb on - strand at 932.846 kb on + strand at 932.846 kb on + strand at 932.847 kb on - strand at 932.882 kb on - strand at 932.934 kb on - strand at 932.961 kb on + strand at 932.962 kb on - strand at 932.962 kb on - strand at 932.962 kb on - strand at 932.965 kb on + strand at 932.965 kb on + strand at 932.965 kb on + strand at 932.965 kb on + strand at 932.966 kb on - strand at 932.966 kb on - strand at 932.966 kb on - strand at 932.966 kb on - strand at 932.966 kb on - strand at 932.966 kb on - strand at 932.966 kb on - strand at 932.987 kb on + strand at 933.024 kb on + strand at 933.025 kb on - strand at 933.081 kb on - strand at 933.120 kb on + strand at 933.120 kb on + strand at 933.120 kb on + strand at 933.120 kb on + strand at 933.120 kb on + strand at 933.120 kb on + strand at 933.120 kb on + strand at 933.120 kb on + strand at 933.120 kb on + strand at 933.121 kb on - strand at 933.121 kb on - strand, within DZA65_RS04475 at 933.121 kb on - strand, within DZA65_RS04475 at 933.121 kb on - strand, within DZA65_RS04475 at 933.121 kb on - strand, within DZA65_RS04475 at 933.123 kb on + strand, within DZA65_RS04475 at 933.123 kb on + strand, within DZA65_RS04475 at 933.123 kb on + strand, within DZA65_RS04475 at 933.123 kb on + strand, within DZA65_RS04475 at 933.123 kb on + strand, within DZA65_RS04475 at 933.124 kb on - strand, within DZA65_RS04475 at 933.124 kb on - strand, within DZA65_RS04475 at 933.124 kb on - strand at 933.124 kb on - strand, within DZA65_RS04475 at 933.124 kb on - strand, within DZA65_RS04475 at 933.124 kb on - strand, within DZA65_RS04475 at 933.124 kb on - strand, within DZA65_RS04475 at 933.124 kb on - strand, within DZA65_RS04475 at 933.124 kb on - strand, within DZA65_RS04475 at 933.124 kb on - strand, within DZA65_RS04475
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 930,459 + +0.1 930,535 + -0.3 930,536 - +0.3 930,536 - -0.4 930,536 - -0.0 930,561 + -0.7 930,561 + +1.3 930,561 + +0.6 930,561 + +0.6 930,562 - -0.7 930,562 - -0.2 930,562 - -0.3 930,562 - +0.3 930,562 - +1.4 930,562 - +0.4 930,562 - -1.5 930,601 + -0.6 930,602 - -1.1 930,656 + DZA65_RS04460 0.15 +0.2 930,657 - DZA65_RS04460 0.15 +1.0 930,672 - DZA65_RS04460 0.17 -2.3 930,672 - DZA65_RS04460 0.17 -1.2 930,792 + DZA65_RS04460 0.29 -1.0 930,793 - DZA65_RS04460 0.30 -1.7 930,793 - DZA65_RS04460 0.30 -1.3 930,980 + DZA65_RS04460 0.49 +0.3 930,980 + DZA65_RS04460 0.49 -0.9 930,982 + DZA65_RS04460 0.49 +0.8 930,982 + DZA65_RS04460 0.49 +0.4 930,982 + DZA65_RS04460 0.49 -0.4 930,983 - DZA65_RS04460 0.49 -1.2 931,035 - DZA65_RS04460 0.55 +0.7 931,035 - DZA65_RS04460 0.55 -0.5 931,056 + DZA65_RS04460 0.57 -1.2 931,056 + DZA65_RS04460 0.57 +0.7 931,127 - DZA65_RS04460 0.64 -1.2 931,162 + DZA65_RS04460 0.68 -2.2 931,162 + DZA65_RS04460 0.68 -0.7 931,162 + DZA65_RS04460 0.68 -0.0 931,162 + DZA65_RS04460 0.68 -1.9 931,162 + DZA65_RS04460 0.68 +1.2 931,162 + DZA65_RS04460 0.68 -1.0 931,162 + DZA65_RS04460 0.68 -0.4 931,162 + DZA65_RS04460 0.68 -1.3 931,162 + DZA65_RS04460 0.68 -0.6 931,162 + DZA65_RS04460 0.68 -1.7 931,163 - DZA65_RS04460 0.68 +0.9 931,163 - DZA65_RS04460 0.68 +0.6 931,163 - DZA65_RS04460 0.68 -0.3 931,163 - DZA65_RS04460 0.68 -0.1 931,163 - DZA65_RS04460 0.68 -1.6 931,163 - DZA65_RS04460 0.68 +0.6 931,163 - DZA65_RS04460 0.68 -0.0 931,163 - DZA65_RS04460 0.68 +1.1 931,163 - DZA65_RS04460 0.68 +0.1 931,211 - DZA65_RS04460 0.73 -0.2 931,211 - DZA65_RS04460 0.73 -0.2 931,211 - DZA65_RS04460 0.73 +0.2 931,225 + DZA65_RS04460 0.75 +1.3 931,226 - DZA65_RS04460 0.75 +1.6 931,226 - DZA65_RS04460 0.75 -1.1 931,226 - DZA65_RS04460 0.75 -0.2 931,226 - DZA65_RS04460 0.75 -0.2 931,278 + DZA65_RS04460 0.80 -0.0 931,328 + DZA65_RS04460 0.85 +0.6 931,328 + DZA65_RS04460 0.85 -1.0 931,328 + DZA65_RS04460 0.85 -0.3 931,328 + DZA65_RS04460 0.85 +1.3 931,329 - DZA65_RS04460 0.86 -2.2 931,329 - DZA65_RS04460 0.86 -0.4 931,329 - DZA65_RS04460 0.86 -0.6 931,351 + DZA65_RS04460 0.88 -0.9 931,411 + -0.3 931,411 + +0.1 931,412 - -0.4 931,412 - +0.6 931,434 + +0.3 931,481 + -0.3 931,482 - -1.1 931,523 + -2.2 931,523 + +0.6 931,538 + DZA65_RS04465 0.11 -0.0 931,539 - DZA65_RS04465 0.11 -1.1 931,539 - DZA65_RS04465 0.11 -0.6 931,539 - DZA65_RS04465 0.11 -1.0 931,539 - DZA65_RS04465 0.11 -1.4 931,542 + DZA65_RS04465 0.12 +0.6 931,542 + DZA65_RS04465 0.12 -0.4 931,542 + DZA65_RS04465 0.12 -0.8 931,543 - DZA65_RS04465 0.12 -0.6 931,543 - DZA65_RS04465 0.12 -0.4 931,543 - DZA65_RS04465 0.12 -0.0 931,543 - DZA65_RS04465 0.12 +0.6 931,543 - DZA65_RS04465 0.12 -0.9 931,543 - DZA65_RS04465 0.12 -0.9 931,588 - DZA65_RS04465 0.18 -0.7 931,677 + DZA65_RS04465 0.31 -0.5 931,677 + DZA65_RS04465 0.31 -1.9 931,678 - DZA65_RS04465 0.31 -0.6 931,678 - DZA65_RS04465 0.31 -0.7 931,678 - DZA65_RS04465 0.31 -0.2 931,683 + DZA65_RS04465 0.32 -1.7 931,683 + DZA65_RS04465 0.32 +1.0 931,684 - DZA65_RS04465 0.32 +0.6 931,684 - DZA65_RS04465 0.32 +0.8 931,684 - DZA65_RS04465 0.32 -1.2 931,710 + DZA65_RS04465 0.36 -1.5 931,710 + DZA65_RS04465 0.36 -0.2 931,724 + DZA65_RS04465 0.38 -0.7 931,745 + DZA65_RS04465 0.41 -0.0 931,890 + DZA65_RS04465 0.62 -2.5 931,890 + DZA65_RS04465 0.62 -0.2 931,891 - DZA65_RS04465 0.62 -0.4 931,924 + DZA65_RS04465 0.67 -0.7 931,924 + DZA65_RS04465 0.67 -0.0 931,924 + DZA65_RS04465 0.67 -0.4 931,924 + DZA65_RS04465 0.67 +0.2 931,924 + DZA65_RS04465 0.67 -0.5 931,924 + DZA65_RS04465 0.67 -0.2 931,924 + DZA65_RS04465 0.67 +0.6 931,925 - DZA65_RS04465 0.67 +0.1 931,925 - DZA65_RS04465 0.67 -0.1 931,925 - DZA65_RS04465 0.67 -0.2 931,925 - DZA65_RS04465 0.67 -0.1 931,925 - DZA65_RS04465 0.67 -1.2 931,925 - DZA65_RS04465 0.67 +0.7 931,925 - DZA65_RS04465 0.67 +0.6 931,925 - DZA65_RS04465 0.67 -0.2 931,925 - DZA65_RS04465 0.67 -0.3 931,929 + DZA65_RS04465 0.67 -0.7 931,929 + DZA65_RS04465 0.67 -1.7 931,929 + DZA65_RS04465 0.67 -0.7 932,008 + DZA65_RS04465 0.79 -0.2 932,008 + DZA65_RS04465 0.79 -1.3 932,009 - DZA65_RS04465 0.79 -0.5 932,009 - DZA65_RS04465 0.79 -2.6 932,009 - DZA65_RS04465 0.79 +0.6 932,009 - DZA65_RS04465 0.79 -1.6 932,016 + DZA65_RS04465 0.80 -0.7 932,023 + DZA65_RS04465 0.81 -1.9 932,024 - DZA65_RS04465 0.81 -0.0 932,024 - DZA65_RS04465 0.81 -1.1 932,024 - DZA65_RS04465 0.81 -1.6 932,030 + DZA65_RS04465 0.82 -1.3 932,031 - DZA65_RS04465 0.82 -0.0 932,031 - DZA65_RS04465 0.82 -0.4 932,131 - -1.7 932,162 + +1.4 932,163 - -1.1 932,215 + -0.7 932,346 - +0.8 932,373 - -0.3 932,429 + -0.2 932,434 + -2.4 932,677 + +0.7 932,677 + +0.8 932,677 + +0.8 932,677 + +1.1 932,677 + -0.7 932,677 + +0.1 932,678 - -0.2 932,678 - -1.1 932,678 - -1.2 932,846 + -1.7 932,846 + -0.5 932,847 - -0.0 932,882 - -1.7 932,934 - -0.4 932,961 + -0.4 932,962 - -2.0 932,962 - -0.5 932,962 - +0.8 932,965 + -0.4 932,965 + -1.0 932,965 + +0.6 932,965 + -0.2 932,966 - -0.0 932,966 - -0.0 932,966 - -1.1 932,966 - -0.8 932,966 - -0.6 932,966 - -1.4 932,966 - +0.2 932,987 + -0.4 933,024 + -0.6 933,025 - -1.2 933,081 - +0.4 933,120 + -1.2 933,120 + -0.2 933,120 + -0.7 933,120 + -0.3 933,120 + +1.4 933,120 + -0.7 933,120 + +0.6 933,120 + -0.4 933,120 + +0.5 933,121 - +1.2 933,121 - DZA65_RS04475 0.10 +0.6 933,121 - DZA65_RS04475 0.10 -0.7 933,121 - DZA65_RS04475 0.10 -0.4 933,121 - DZA65_RS04475 0.10 -0.1 933,123 + DZA65_RS04475 0.10 -0.4 933,123 + DZA65_RS04475 0.10 -0.2 933,123 + DZA65_RS04475 0.10 +0.4 933,123 + DZA65_RS04475 0.10 -0.1 933,123 + DZA65_RS04475 0.10 -2.7 933,124 - DZA65_RS04475 0.10 +0.8 933,124 - DZA65_RS04475 0.10 -1.2 933,124 - +3.6 933,124 - DZA65_RS04475 0.10 +2.2 933,124 - DZA65_RS04475 0.10 -2.1 933,124 - DZA65_RS04475 0.10 -2.7 933,124 - DZA65_RS04475 0.10 -0.3 933,124 - DZA65_RS04475 0.10 -1.6 933,124 - DZA65_RS04475 0.10 -1.3 933,124 - DZA65_RS04475 0.10 -1.2
Or see this region's nucleotide sequence