Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS04425

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS04420 and DZA65_RS04425 are separated by 450 nucleotidesDZA65_RS04425 and DZA65_RS04430 are separated by 106 nucleotidesDZA65_RS04430 and DZA65_RS04440 are separated by 249 nucleotides DZA65_RS04420: DZA65_RS04420 - fumarate hydratase, at 922,613 to 924,256 _RS04420 DZA65_RS04425: DZA65_RS04425 - LysR family transcriptional regulator, at 924,707 to 925,573 _RS04425 DZA65_RS04430: DZA65_RS04430 - multidrug/biocide efflux PACE transporter, at 925,680 to 926,147 _RS04430 DZA65_RS04440: DZA65_RS04440 - DNA oxidative demethylase AlkB, at 926,397 to 927,050 _RS04440 Position (kb) 924 925 926Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 923.725 kb on - strand, within DZA65_RS04420at 923.745 kb on + strand, within DZA65_RS04420at 923.745 kb on + strand, within DZA65_RS04420at 923.746 kb on - strand, within DZA65_RS04420at 923.753 kb on + strand, within DZA65_RS04420at 923.791 kb on + strand, within DZA65_RS04420at 923.791 kb on + strand, within DZA65_RS04420at 923.792 kb on - strand, within DZA65_RS04420at 923.793 kb on + strand, within DZA65_RS04420at 923.793 kb on + strand, within DZA65_RS04420at 923.793 kb on + strand, within DZA65_RS04420at 923.793 kb on + strandat 923.793 kb on + strand, within DZA65_RS04420at 923.793 kb on + strand, within DZA65_RS04420at 923.793 kb on + strand, within DZA65_RS04420at 923.793 kb on + strand, within DZA65_RS04420at 923.793 kb on + strand, within DZA65_RS04420at 923.793 kb on + strand, within DZA65_RS04420at 923.793 kb on + strand, within DZA65_RS04420at 923.793 kb on + strand, within DZA65_RS04420at 923.793 kb on + strand, within DZA65_RS04420at 923.793 kb on + strand, within DZA65_RS04420at 923.793 kb on + strand, within DZA65_RS04420at 923.794 kb on - strand, within DZA65_RS04420at 923.794 kb on - strand, within DZA65_RS04420at 923.794 kb on - strand, within DZA65_RS04420at 923.794 kb on - strand, within DZA65_RS04420at 923.794 kb on - strand, within DZA65_RS04420at 923.794 kb on - strand, within DZA65_RS04420at 923.794 kb on - strand, within DZA65_RS04420at 923.794 kb on - strand, within DZA65_RS04420at 923.794 kb on - strand, within DZA65_RS04420at 923.794 kb on - strand, within DZA65_RS04420at 923.794 kb on - strand, within DZA65_RS04420at 923.794 kb on - strand, within DZA65_RS04420at 923.794 kb on - strand, within DZA65_RS04420at 923.794 kb on - strand, within DZA65_RS04420at 923.794 kb on - strand, within DZA65_RS04420at 923.794 kb on - strand, within DZA65_RS04420at 923.794 kb on - strand, within DZA65_RS04420at 923.840 kb on - strand, within DZA65_RS04420at 923.850 kb on + strand, within DZA65_RS04420at 923.851 kb on - strand, within DZA65_RS04420at 923.851 kb on - strand, within DZA65_RS04420at 923.895 kb on - strand, within DZA65_RS04420at 923.981 kb on - strand, within DZA65_RS04420at 924.004 kb on - strand, within DZA65_RS04420at 924.189 kb on - strandat 924.205 kb on + strandat 924.237 kb on + strandat 924.237 kb on + strandat 924.237 kb on + strandat 924.302 kb on + strandat 924.303 kb on - strandat 924.333 kb on + strandat 924.333 kb on + strandat 924.333 kb on + strandat 924.333 kb on + strandat 924.334 kb on - strandat 924.334 kb on - strandat 924.334 kb on - strandat 924.390 kb on - strandat 924.403 kb on + strandat 924.404 kb on - strandat 924.404 kb on - strandat 924.404 kb on - strandat 924.454 kb on + strandat 924.454 kb on + strandat 924.454 kb on + strandat 924.454 kb on + strandat 924.454 kb on + strandat 924.455 kb on - strandat 924.455 kb on - strandat 924.455 kb on - strandat 924.455 kb on - strandat 924.455 kb on - strandat 924.455 kb on - strandat 924.457 kb on + strandat 924.457 kb on + strandat 924.457 kb on + strandat 924.457 kb on + strandat 924.458 kb on - strandat 924.458 kb on - strandat 924.458 kb on - strandat 924.478 kb on - strandat 924.499 kb on - strandat 924.499 kb on - strandat 924.533 kb on - strandat 924.555 kb on - strandat 924.570 kb on + strandat 924.570 kb on + strandat 924.591 kb on - strandat 924.591 kb on - strandat 924.599 kb on + strandat 924.599 kb on + strandat 924.634 kb on + strandat 924.634 kb on + strandat 924.634 kb on + strandat 924.635 kb on - strandat 924.635 kb on - strandat 924.646 kb on - strandat 924.653 kb on + strandat 924.653 kb on + strandat 924.653 kb on + strandat 924.654 kb on - strandat 924.654 kb on - strandat 924.658 kb on + strandat 924.658 kb on + strandat 924.658 kb on + strandat 924.658 kb on + strandat 924.658 kb on + strandat 924.659 kb on - strandat 924.659 kb on - strandat 924.659 kb on - strandat 924.659 kb on - strandat 924.660 kb on + strandat 924.661 kb on - strandat 924.661 kb on - strandat 924.661 kb on - strandat 924.661 kb on - strandat 924.661 kb on - strandat 924.662 kb on + strandat 924.662 kb on + strandat 924.663 kb on - strandat 924.671 kb on + strandat 924.671 kb on + strandat 924.671 kb on + strandat 924.672 kb on - strandat 924.672 kb on - strandat 924.672 kb on - strandat 924.709 kb on - strandat 924.709 kb on - strandat 924.731 kb on - strandat 924.736 kb on + strandat 924.743 kb on + strandat 924.743 kb on + strandat 924.743 kb on + strandat 924.743 kb on + strandat 924.846 kb on + strand, within DZA65_RS04425at 924.846 kb on + strand, within DZA65_RS04425at 924.875 kb on - strand, within DZA65_RS04425at 924.919 kb on - strand, within DZA65_RS04425at 924.970 kb on + strand, within DZA65_RS04425at 924.971 kb on - strand, within DZA65_RS04425at 924.972 kb on + strand, within DZA65_RS04425at 924.972 kb on + strand, within DZA65_RS04425at 924.972 kb on + strand, within DZA65_RS04425at 924.972 kb on + strand, within DZA65_RS04425at 924.972 kb on + strand, within DZA65_RS04425at 924.972 kb on + strand, within DZA65_RS04425at 924.972 kb on + strand, within DZA65_RS04425at 924.972 kb on + strand, within DZA65_RS04425at 924.972 kb on + strand, within DZA65_RS04425at 924.972 kb on + strand, within DZA65_RS04425at 924.972 kb on + strand, within DZA65_RS04425at 924.972 kb on + strand, within DZA65_RS04425at 924.972 kb on + strand, within DZA65_RS04425at 924.972 kb on + strand, within DZA65_RS04425at 924.972 kb on + strand, within DZA65_RS04425at 924.973 kb on - strand, within DZA65_RS04425at 924.973 kb on - strand, within DZA65_RS04425at 924.973 kb on - strand, within DZA65_RS04425at 924.973 kb on - strand, within DZA65_RS04425at 924.973 kb on - strand, within DZA65_RS04425at 924.973 kb on - strand, within DZA65_RS04425at 924.973 kb on - strand, within DZA65_RS04425at 924.973 kb on - strand, within DZA65_RS04425at 924.973 kb on - strand, within DZA65_RS04425at 924.973 kb on - strand, within DZA65_RS04425at 924.973 kb on - strand, within DZA65_RS04425at 924.973 kb on - strand, within DZA65_RS04425at 924.973 kb on - strand, within DZA65_RS04425at 924.973 kb on - strandat 924.973 kb on - strand, within DZA65_RS04425at 924.973 kb on - strand, within DZA65_RS04425at 925.027 kb on + strand, within DZA65_RS04425at 925.027 kb on + strand, within DZA65_RS04425at 925.027 kb on + strand, within DZA65_RS04425at 925.027 kb on + strand, within DZA65_RS04425at 925.028 kb on - strand, within DZA65_RS04425at 925.059 kb on + strand, within DZA65_RS04425at 925.059 kb on + strand, within DZA65_RS04425at 925.059 kb on + strand, within DZA65_RS04425at 925.060 kb on - strand, within DZA65_RS04425at 925.060 kb on - strand, within DZA65_RS04425at 925.060 kb on - strand, within DZA65_RS04425at 925.060 kb on - strand, within DZA65_RS04425at 925.060 kb on - strand, within DZA65_RS04425at 925.060 kb on - strand, within DZA65_RS04425at 925.060 kb on - strand, within DZA65_RS04425at 925.169 kb on + strand, within DZA65_RS04425at 925.169 kb on + strand, within DZA65_RS04425at 925.251 kb on + strand, within DZA65_RS04425at 925.252 kb on - strand, within DZA65_RS04425at 925.525 kb on + strandat 925.611 kb on - strandat 925.623 kb on + strandat 925.679 kb on + strandat 925.679 kb on + strandat 925.679 kb on + strandat 925.679 kb on + strandat 925.679 kb on + strandat 925.679 kb on + strandat 925.679 kb on + strandat 925.680 kb on - strandat 925.790 kb on - strand, within DZA65_RS04430at 925.878 kb on + strand, within DZA65_RS04430at 925.879 kb on - strand, within DZA65_RS04430at 925.879 kb on - strand, within DZA65_RS04430at 925.879 kb on - strand, within DZA65_RS04430at 925.973 kb on + strand, within DZA65_RS04430at 925.974 kb on - strand, within DZA65_RS04430at 926.012 kb on + strand, within DZA65_RS04430at 926.013 kb on - strand, within DZA65_RS04430at 926.070 kb on + strand, within DZA65_RS04430at 926.070 kb on + strand, within DZA65_RS04430at 926.070 kb on + strand, within DZA65_RS04430at 926.070 kb on + strand, within DZA65_RS04430at 926.070 kb on + strand, within DZA65_RS04430at 926.071 kb on - strand, within DZA65_RS04430at 926.071 kb on - strand, within DZA65_RS04430at 926.071 kb on - strand, within DZA65_RS04430at 926.071 kb on - strand, within DZA65_RS04430at 926.071 kb on - strand, within DZA65_RS04430at 926.071 kb on - strand, within DZA65_RS04430at 926.072 kb on + strand, within DZA65_RS04430at 926.072 kb on + strand, within DZA65_RS04430at 926.072 kb on + strand, within DZA65_RS04430at 926.072 kb on + strand, within DZA65_RS04430at 926.072 kb on + strand, within DZA65_RS04430at 926.073 kb on - strandat 926.082 kb on + strand, within DZA65_RS04430at 926.082 kb on + strand, within DZA65_RS04430at 926.082 kb on + strand, within DZA65_RS04430at 926.082 kb on + strand, within DZA65_RS04430at 926.082 kb on + strand, within DZA65_RS04430at 926.082 kb on + strand, within DZA65_RS04430at 926.082 kb on + strand, within DZA65_RS04430at 926.083 kb on - strand, within DZA65_RS04430at 926.083 kb on - strand, within DZA65_RS04430at 926.083 kb on - strand, within DZA65_RS04430at 926.083 kb on - strand, within DZA65_RS04430at 926.083 kb on - strand, within DZA65_RS04430at 926.146 kb on - strandat 926.180 kb on - strandat 926.310 kb on - strandat 926.325 kb on + strandat 926.359 kb on + strandat 926.359 kb on + strandat 926.359 kb on + strandat 926.360 kb on - strandat 926.360 kb on - strandat 926.360 kb on - strandat 926.570 kb on + strand, within DZA65_RS04440at 926.570 kb on + strand, within DZA65_RS04440at 926.570 kb on + strandat 926.571 kb on - strand, within DZA65_RS04440at 926.571 kb on - strand, within DZA65_RS04440at 926.571 kb on - strand, within DZA65_RS04440at 926.571 kb on - strand, within DZA65_RS04440at 926.571 kb on - strand, within DZA65_RS04440at 926.571 kb on - strand, within DZA65_RS04440at 926.571 kb on - strand, within DZA65_RS04440at 926.571 kb on - strand, within DZA65_RS04440at 926.571 kb on - strand, within DZA65_RS04440

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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923,725 - DZA65_RS04420 0.68 -0.7
923,745 + DZA65_RS04420 0.69 +0.6
923,745 + DZA65_RS04420 0.69 -0.0
923,746 - DZA65_RS04420 0.69 -0.7
923,753 + DZA65_RS04420 0.69 -1.4
923,791 + DZA65_RS04420 0.72 +1.6
923,791 + DZA65_RS04420 0.72 +0.7
923,792 - DZA65_RS04420 0.72 -0.4
923,793 + DZA65_RS04420 0.72 +0.6
923,793 + DZA65_RS04420 0.72 +0.6
923,793 + DZA65_RS04420 0.72 -0.7
923,793 + +0.6
923,793 + DZA65_RS04420 0.72 +0.4
923,793 + DZA65_RS04420 0.72 -0.4
923,793 + DZA65_RS04420 0.72 -1.2
923,793 + DZA65_RS04420 0.72 -1.4
923,793 + DZA65_RS04420 0.72 -1.5
923,793 + DZA65_RS04420 0.72 -1.4
923,793 + DZA65_RS04420 0.72 -0.6
923,793 + DZA65_RS04420 0.72 +0.4
923,793 + DZA65_RS04420 0.72 -3.9
923,793 + DZA65_RS04420 0.72 -0.2
923,793 + DZA65_RS04420 0.72 -1.7
923,794 - DZA65_RS04420 0.72 -1.1
923,794 - DZA65_RS04420 0.72 -1.9
923,794 - DZA65_RS04420 0.72 +1.6
923,794 - DZA65_RS04420 0.72 -0.7
923,794 - DZA65_RS04420 0.72 -1.0
923,794 - DZA65_RS04420 0.72 -1.2
923,794 - DZA65_RS04420 0.72 -1.5
923,794 - DZA65_RS04420 0.72 -0.5
923,794 - DZA65_RS04420 0.72 -1.2
923,794 - DZA65_RS04420 0.72 -1.4
923,794 - DZA65_RS04420 0.72 -0.0
923,794 - DZA65_RS04420 0.72 +0.2
923,794 - DZA65_RS04420 0.72 +0.2
923,794 - DZA65_RS04420 0.72 -0.4
923,794 - DZA65_RS04420 0.72 +0.3
923,794 - DZA65_RS04420 0.72 -0.9
923,794 - DZA65_RS04420 0.72 -1.6
923,840 - DZA65_RS04420 0.75 -2.1
923,850 + DZA65_RS04420 0.75 +0.6
923,851 - DZA65_RS04420 0.75 +0.3
923,851 - DZA65_RS04420 0.75 -2.8
923,895 - DZA65_RS04420 0.78 -0.4
923,981 - DZA65_RS04420 0.83 -0.6
924,004 - DZA65_RS04420 0.85 +1.6
924,189 - -0.6
924,205 + -0.6
924,237 + -1.2
924,237 + -1.0
924,237 + +0.4
924,302 + -0.7
924,303 - -0.1
924,333 + +0.3
924,333 + -1.2
924,333 + +0.6
924,333 + -0.8
924,334 - -0.0
924,334 - +0.3
924,334 - +0.6
924,390 - -1.0
924,403 + -0.7
924,404 - +0.6
924,404 - +1.6
924,404 - -1.0
924,454 + -0.0
924,454 + +0.2
924,454 + +1.9
924,454 + -0.3
924,454 + -0.0
924,455 - +0.6
924,455 - +0.3
924,455 - -1.6
924,455 - +0.7
924,455 - +0.4
924,455 - -0.9
924,457 + +0.1
924,457 + -1.0
924,457 + -0.7
924,457 + -1.7
924,458 - -0.3
924,458 - -0.3
924,458 - -1.6
924,478 - -0.2
924,499 - -0.6
924,499 - +0.3
924,533 - -0.8
924,555 - +0.8
924,570 + -1.7
924,570 + +0.6
924,591 - -0.7
924,591 - -0.2
924,599 + +0.3
924,599 + -1.0
924,634 + -0.0
924,634 + -0.9
924,634 + -1.0
924,635 - -0.0
924,635 - -1.6
924,646 - -1.0
924,653 + -1.6
924,653 + +0.3
924,653 + -1.1
924,654 - -0.1
924,654 - -1.0
924,658 + +1.3
924,658 + +0.3
924,658 + -2.3
924,658 + +0.6
924,658 + +0.2
924,659 - +0.4
924,659 - -0.4
924,659 - -1.1
924,659 - -1.1
924,660 + -0.9
924,661 - -0.0
924,661 - -0.6
924,661 - -0.2
924,661 - -0.6
924,661 - -2.1
924,662 + +0.8
924,662 + -2.3
924,663 - +0.7
924,671 + -0.0
924,671 + -0.2
924,671 + -1.9
924,672 - +0.6
924,672 - -1.4
924,672 - -0.9
924,709 - -1.7
924,709 - -1.1
924,731 - +0.3
924,736 + +0.2
924,743 + -1.1
924,743 + -0.0
924,743 + -0.5
924,743 + -1.4
924,846 + DZA65_RS04425 0.16 -0.2
924,846 + DZA65_RS04425 0.16 -1.4
924,875 - DZA65_RS04425 0.19 +0.3
924,919 - DZA65_RS04425 0.24 +1.3
924,970 + DZA65_RS04425 0.30 -2.3
924,971 - DZA65_RS04425 0.30 -0.2
924,972 + DZA65_RS04425 0.31 -1.7
924,972 + DZA65_RS04425 0.31 -0.9
924,972 + DZA65_RS04425 0.31 -0.8
924,972 + DZA65_RS04425 0.31 -0.2
924,972 + DZA65_RS04425 0.31 -1.4
924,972 + DZA65_RS04425 0.31 -1.3
924,972 + DZA65_RS04425 0.31 -0.0
924,972 + DZA65_RS04425 0.31 +1.6
924,972 + DZA65_RS04425 0.31 +0.3
924,972 + DZA65_RS04425 0.31 -0.0
924,972 + DZA65_RS04425 0.31 -1.0
924,972 + DZA65_RS04425 0.31 +0.1
924,972 + DZA65_RS04425 0.31 -0.9
924,972 + DZA65_RS04425 0.31 -0.0
924,972 + DZA65_RS04425 0.31 -0.4
924,973 - DZA65_RS04425 0.31 +1.0
924,973 - DZA65_RS04425 0.31 +1.6
924,973 - DZA65_RS04425 0.31 -2.2
924,973 - DZA65_RS04425 0.31 -0.0
924,973 - DZA65_RS04425 0.31 -0.0
924,973 - DZA65_RS04425 0.31 +0.4
924,973 - DZA65_RS04425 0.31 +0.4
924,973 - DZA65_RS04425 0.31 -1.0
924,973 - DZA65_RS04425 0.31 -3.1
924,973 - DZA65_RS04425 0.31 -0.2
924,973 - DZA65_RS04425 0.31 -2.9
924,973 - DZA65_RS04425 0.31 -1.7
924,973 - DZA65_RS04425 0.31 -0.4
924,973 - +0.3
924,973 - DZA65_RS04425 0.31 -0.8
924,973 - DZA65_RS04425 0.31 -0.9
925,027 + DZA65_RS04425 0.37 +0.1
925,027 + DZA65_RS04425 0.37 +0.8
925,027 + DZA65_RS04425 0.37 +0.3
925,027 + DZA65_RS04425 0.37 -0.6
925,028 - DZA65_RS04425 0.37 -0.6
925,059 + DZA65_RS04425 0.41 -0.8
925,059 + DZA65_RS04425 0.41 +0.8
925,059 + DZA65_RS04425 0.41 -0.3
925,060 - DZA65_RS04425 0.41 -1.9
925,060 - DZA65_RS04425 0.41 +0.8
925,060 - DZA65_RS04425 0.41 -0.8
925,060 - DZA65_RS04425 0.41 -1.8
925,060 - DZA65_RS04425 0.41 -0.7
925,060 - DZA65_RS04425 0.41 -1.2
925,060 - DZA65_RS04425 0.41 -1.6
925,169 + DZA65_RS04425 0.53 +0.1
925,169 + DZA65_RS04425 0.53 -1.0
925,251 + DZA65_RS04425 0.63 -0.5
925,252 - DZA65_RS04425 0.63 -0.0
925,525 + +0.3
925,611 - -0.6
925,623 + -0.6
925,679 + -1.4
925,679 + +0.6
925,679 + +0.6
925,679 + -0.2
925,679 + -1.4
925,679 + -0.6
925,679 + +0.2
925,680 - +2.1
925,790 - DZA65_RS04430 0.24 +2.2
925,878 + DZA65_RS04430 0.42 +0.6
925,879 - DZA65_RS04430 0.43 -1.3
925,879 - DZA65_RS04430 0.43 -0.3
925,879 - DZA65_RS04430 0.43 -0.4
925,973 + DZA65_RS04430 0.63 -1.7
925,974 - DZA65_RS04430 0.63 -0.7
926,012 + DZA65_RS04430 0.71 -0.7
926,013 - DZA65_RS04430 0.71 -0.6
926,070 + DZA65_RS04430 0.83 -1.4
926,070 + DZA65_RS04430 0.83 -1.0
926,070 + DZA65_RS04430 0.83 -1.4
926,070 + DZA65_RS04430 0.83 -0.5
926,070 + DZA65_RS04430 0.83 +1.6
926,071 - DZA65_RS04430 0.84 +0.2
926,071 - DZA65_RS04430 0.84 -1.4
926,071 - DZA65_RS04430 0.84 -0.0
926,071 - DZA65_RS04430 0.84 -0.0
926,071 - DZA65_RS04430 0.84 -0.5
926,071 - DZA65_RS04430 0.84 +0.6
926,072 + DZA65_RS04430 0.84 -1.7
926,072 + DZA65_RS04430 0.84 -0.5
926,072 + DZA65_RS04430 0.84 -0.0
926,072 + DZA65_RS04430 0.84 +0.2
926,072 + DZA65_RS04430 0.84 -0.4
926,073 - -0.0
926,082 + DZA65_RS04430 0.86 -1.1
926,082 + DZA65_RS04430 0.86 -1.5
926,082 + DZA65_RS04430 0.86 -1.7
926,082 + DZA65_RS04430 0.86 -0.6
926,082 + DZA65_RS04430 0.86 -1.9
926,082 + DZA65_RS04430 0.86 -1.5
926,082 + DZA65_RS04430 0.86 +0.3
926,083 - DZA65_RS04430 0.86 -0.4
926,083 - DZA65_RS04430 0.86 -0.0
926,083 - DZA65_RS04430 0.86 -1.0
926,083 - DZA65_RS04430 0.86 +0.2
926,083 - DZA65_RS04430 0.86 +0.2
926,146 - +1.2
926,180 - -0.7
926,310 - +0.2
926,325 + +0.6
926,359 + -0.6
926,359 + -2.3
926,359 + -1.2
926,360 - -0.7
926,360 - -0.5
926,360 - -0.7
926,570 + DZA65_RS04440 0.26 +0.9
926,570 + DZA65_RS04440 0.26 +1.2
926,570 + +2.6
926,571 - DZA65_RS04440 0.27 +0.2
926,571 - DZA65_RS04440 0.27 -0.3
926,571 - DZA65_RS04440 0.27 -0.5
926,571 - DZA65_RS04440 0.27 -1.7
926,571 - DZA65_RS04440 0.27 -1.5
926,571 - DZA65_RS04440 0.27 +1.3
926,571 - DZA65_RS04440 0.27 +1.2
926,571 - DZA65_RS04440 0.27 -0.2
926,571 - DZA65_RS04440 0.27 -2.0

Or see this region's nucleotide sequence