Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS04265 and DZA65_RS04270 are separated by 57 nucleotides DZA65_RS04270 and DZA65_RS04275 overlap by 4 nucleotides DZA65_RS04275 and DZA65_RS04280 are separated by 213 nucleotides
DZA65_RS04265: DZA65_RS04265 - NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase, at 889,239 to 891,518
_RS04265
DZA65_RS04270: DZA65_RS04270 - YaiI/YqxD family protein, at 891,576 to 892,025
_RS04270
DZA65_RS04275: DZA65_RS04275 - oxygen-dependent coproporphyrinogen oxidase, at 892,022 to 892,960
_RS04275
DZA65_RS04280: DZA65_RS04280 - GNAT family acetyltransferase, at 893,174 to 893,599
_RS04280
Position (kb) 892
893 Strain fitness (log2 ratio) -2
-1
0
1
2 at 891.033 kb on + strand, within DZA65_RS04265 at 891.033 kb on + strand, within DZA65_RS04265 at 891.033 kb on + strand, within DZA65_RS04265 at 891.033 kb on + strand, within DZA65_RS04265 at 891.033 kb on + strand, within DZA65_RS04265 at 891.033 kb on + strand, within DZA65_RS04265 at 891.033 kb on + strand, within DZA65_RS04265 at 891.033 kb on + strand, within DZA65_RS04265 at 891.033 kb on + strand, within DZA65_RS04265 at 891.033 kb on + strand, within DZA65_RS04265 at 891.033 kb on + strand, within DZA65_RS04265 at 891.033 kb on + strand, within DZA65_RS04265 at 891.033 kb on + strand, within DZA65_RS04265 at 891.033 kb on + strand, within DZA65_RS04265 at 891.034 kb on - strand, within DZA65_RS04265 at 891.034 kb on - strand, within DZA65_RS04265 at 891.034 kb on - strand, within DZA65_RS04265 at 891.034 kb on - strand, within DZA65_RS04265 at 891.034 kb on - strand, within DZA65_RS04265 at 891.034 kb on - strand, within DZA65_RS04265 at 891.034 kb on - strand, within DZA65_RS04265 at 891.034 kb on - strand, within DZA65_RS04265 at 891.034 kb on - strand, within DZA65_RS04265 at 891.034 kb on - strand, within DZA65_RS04265 at 891.034 kb on - strand, within DZA65_RS04265 at 891.034 kb on - strand, within DZA65_RS04265 at 891.270 kb on - strand, within DZA65_RS04265 at 891.317 kb on + strand at 891.357 kb on + strand at 891.357 kb on + strand at 891.357 kb on + strand at 891.357 kb on + strand at 891.357 kb on + strand at 891.357 kb on + strand at 891.358 kb on - strand at 891.358 kb on - strand at 891.358 kb on - strand at 891.358 kb on - strand at 891.430 kb on + strand at 891.430 kb on + strand at 891.516 kb on + strand at 891.516 kb on + strand at 891.560 kb on + strand at 891.560 kb on + strand at 891.561 kb on - strand at 891.639 kb on + strand, within DZA65_RS04270 at 891.639 kb on + strand, within DZA65_RS04270 at 891.640 kb on - strand, within DZA65_RS04270 at 891.640 kb on - strand, within DZA65_RS04270 at 891.640 kb on - strand, within DZA65_RS04270 at 891.663 kb on + strand, within DZA65_RS04270 at 891.683 kb on + strand, within DZA65_RS04270 at 891.684 kb on - strand, within DZA65_RS04270 at 891.684 kb on - strand, within DZA65_RS04270 at 891.684 kb on - strand, within DZA65_RS04270 at 891.722 kb on + strand, within DZA65_RS04270 at 891.733 kb on + strand, within DZA65_RS04270 at 891.733 kb on + strand, within DZA65_RS04270 at 891.733 kb on + strand, within DZA65_RS04270 at 891.733 kb on + strand at 891.911 kb on + strand, within DZA65_RS04270 at 891.911 kb on + strand, within DZA65_RS04270 at 892.045 kb on + strand at 892.232 kb on + strand, within DZA65_RS04275 at 892.861 kb on + strand, within DZA65_RS04275 at 892.961 kb on - strand at 892.961 kb on - strand at 892.961 kb on - strand at 892.961 kb on - strand at 892.971 kb on - strand at 892.971 kb on - strand at 892.971 kb on - strand at 892.998 kb on + strand at 892.998 kb on + strand at 893.011 kb on + strand at 893.012 kb on - strand at 893.012 kb on - strand at 893.012 kb on - strand at 893.012 kb on - strand at 893.012 kb on - strand at 893.014 kb on + strand at 893.014 kb on + strand at 893.014 kb on + strand at 893.015 kb on - strand at 893.015 kb on - strand at 893.015 kb on - strand at 893.015 kb on - strand at 893.020 kb on + strand at 893.020 kb on + strand at 893.020 kb on + strand at 893.020 kb on + strand at 893.020 kb on + strand at 893.020 kb on + strand at 893.020 kb on + strand at 893.020 kb on + strand at 893.020 kb on + strand at 893.020 kb on + strand at 893.020 kb on + strand at 893.020 kb on + strand at 893.020 kb on + strand at 893.020 kb on + strand at 893.021 kb on - strand at 893.021 kb on - strand at 893.021 kb on - strand at 893.021 kb on - strand at 893.021 kb on - strand at 893.023 kb on + strand at 893.023 kb on + strand at 893.023 kb on + strand at 893.023 kb on + strand at 893.023 kb on + strand at 893.023 kb on + strand at 893.024 kb on - strand at 893.024 kb on - strand at 893.024 kb on - strand at 893.024 kb on - strand at 893.024 kb on - strand at 893.024 kb on - strand at 893.024 kb on - strand at 893.024 kb on - strand at 893.024 kb on - strand at 893.024 kb on - strand at 893.025 kb on + strand at 893.026 kb on - strand at 893.097 kb on + strand at 893.097 kb on + strand at 893.098 kb on - strand at 893.098 kb on - strand at 893.108 kb on + strand at 893.108 kb on + strand at 893.109 kb on - strand at 893.109 kb on - strand at 893.109 kb on - strand at 893.109 kb on - strand at 893.158 kb on + strand at 893.158 kb on + strand at 893.158 kb on + strand at 893.158 kb on + strand at 893.158 kb on + strand at 893.159 kb on - strand at 893.159 kb on - strand at 893.159 kb on - strand at 893.159 kb on - strand at 893.159 kb on - strand at 893.159 kb on - strand at 893.159 kb on - strand at 893.159 kb on - strand at 893.159 kb on - strand at 893.159 kb on - strand at 893.159 kb on - strand at 893.187 kb on + strand at 893.187 kb on + strand at 893.287 kb on + strand, within DZA65_RS04280 at 893.287 kb on + strand, within DZA65_RS04280 at 893.288 kb on - strand, within DZA65_RS04280 at 893.288 kb on - strand, within DZA65_RS04280 at 893.381 kb on + strand, within DZA65_RS04280 at 893.382 kb on - strand, within DZA65_RS04280 at 893.382 kb on - strand at 893.384 kb on + strand, within DZA65_RS04280 at 893.384 kb on + strand, within DZA65_RS04280 at 893.384 kb on + strand, within DZA65_RS04280 at 893.384 kb on + strand, within DZA65_RS04280 at 893.384 kb on + strand, within DZA65_RS04280 at 893.385 kb on - strand, within DZA65_RS04280 at 893.385 kb on - strand, within DZA65_RS04280 at 893.385 kb on - strand, within DZA65_RS04280 at 893.385 kb on - strand, within DZA65_RS04280 at 893.385 kb on - strand, within DZA65_RS04280 at 893.525 kb on + strand, within DZA65_RS04280 at 893.525 kb on + strand, within DZA65_RS04280 at 893.525 kb on + strand, within DZA65_RS04280 at 893.526 kb on - strand, within DZA65_RS04280 at 893.526 kb on - strand, within DZA65_RS04280 at 893.526 kb on - strand, within DZA65_RS04280 at 893.526 kb on - strand, within DZA65_RS04280 at 893.526 kb on - strand, within DZA65_RS04280 at 893.526 kb on - strand, within DZA65_RS04280 at 893.526 kb on - strand, within DZA65_RS04280 at 893.540 kb on + strand, within DZA65_RS04280 at 893.540 kb on + strand, within DZA65_RS04280 at 893.540 kb on + strand, within DZA65_RS04280 at 893.540 kb on + strand at 893.540 kb on + strand, within DZA65_RS04280 at 893.540 kb on + strand, within DZA65_RS04280 at 893.594 kb on + strand at 893.657 kb on - strand at 893.657 kb on - strand at 893.752 kb on + strand at 893.756 kb on + strand at 893.756 kb on + strand at 893.756 kb on + strand at 893.756 kb on + strand at 893.757 kb on - strand at 893.757 kb on - strand at 893.757 kb on - strand at 893.757 kb on - strand at 893.757 kb on - strand at 893.757 kb on - strand at 893.849 kb on + strand at 893.850 kb on - strand at 893.870 kb on + strand at 893.870 kb on + strand at 893.870 kb on + strand at 893.870 kb on + strand at 893.870 kb on + strand at 893.870 kb on + strand at 893.871 kb on - strand at 893.871 kb on - strand at 893.871 kb on - strand at 893.871 kb on - strand at 893.871 kb on - strand at 893.871 kb on - strand at 893.871 kb on - strand at 893.958 kb on + strand at 893.958 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 891,033 + DZA65_RS04265 0.79 -0.3 891,033 + DZA65_RS04265 0.79 -0.2 891,033 + DZA65_RS04265 0.79 -0.7 891,033 + DZA65_RS04265 0.79 -0.7 891,033 + DZA65_RS04265 0.79 -0.3 891,033 + DZA65_RS04265 0.79 -0.4 891,033 + DZA65_RS04265 0.79 -0.2 891,033 + DZA65_RS04265 0.79 +0.8 891,033 + DZA65_RS04265 0.79 -2.0 891,033 + DZA65_RS04265 0.79 -0.7 891,033 + DZA65_RS04265 0.79 +0.4 891,033 + DZA65_RS04265 0.79 +1.1 891,033 + DZA65_RS04265 0.79 +0.1 891,033 + DZA65_RS04265 0.79 -0.1 891,034 - DZA65_RS04265 0.79 -0.3 891,034 - DZA65_RS04265 0.79 +0.0 891,034 - DZA65_RS04265 0.79 +0.6 891,034 - DZA65_RS04265 0.79 -0.2 891,034 - DZA65_RS04265 0.79 +0.3 891,034 - DZA65_RS04265 0.79 +1.3 891,034 - DZA65_RS04265 0.79 -1.5 891,034 - DZA65_RS04265 0.79 +0.7 891,034 - DZA65_RS04265 0.79 -2.7 891,034 - DZA65_RS04265 0.79 +0.5 891,034 - DZA65_RS04265 0.79 -0.4 891,034 - DZA65_RS04265 0.79 +0.3 891,270 - DZA65_RS04265 0.89 -1.3 891,317 + +0.1 891,357 + -0.2 891,357 + +0.9 891,357 + -1.9 891,357 + +0.2 891,357 + -1.1 891,357 + -2.1 891,358 - +1.0 891,358 - +1.6 891,358 - +1.0 891,358 - +1.9 891,430 + -1.7 891,430 + +2.7 891,516 + +0.3 891,516 + -0.6 891,560 + -1.6 891,560 + -1.2 891,561 - -1.7 891,639 + DZA65_RS04270 0.14 +0.4 891,639 + DZA65_RS04270 0.14 -2.0 891,640 - DZA65_RS04270 0.14 +0.1 891,640 - DZA65_RS04270 0.14 -0.4 891,640 - DZA65_RS04270 0.14 +0.0 891,663 + DZA65_RS04270 0.19 -1.8 891,683 + DZA65_RS04270 0.24 -1.5 891,684 - DZA65_RS04270 0.24 -1.0 891,684 - DZA65_RS04270 0.24 -0.7 891,684 - DZA65_RS04270 0.24 -0.4 891,722 + DZA65_RS04270 0.32 -0.7 891,733 + DZA65_RS04270 0.35 -0.1 891,733 + DZA65_RS04270 0.35 +0.0 891,733 + DZA65_RS04270 0.35 +0.6 891,733 + +1.6 891,911 + DZA65_RS04270 0.74 +0.6 891,911 + DZA65_RS04270 0.74 -0.7 892,045 + -1.1 892,232 + DZA65_RS04275 0.22 -1.4 892,861 + DZA65_RS04275 0.89 -2.1 892,961 - -0.7 892,961 - -0.2 892,961 - -0.7 892,961 - -1.6 892,971 - -1.4 892,971 - -1.2 892,971 - -1.6 892,998 + -1.0 892,998 + +0.1 893,011 + +0.8 893,012 - -0.2 893,012 - -0.1 893,012 - +0.2 893,012 - +0.0 893,012 - +0.5 893,014 + +1.2 893,014 + -0.9 893,014 + -0.1 893,015 - -0.3 893,015 - -0.7 893,015 - -0.8 893,015 - +0.9 893,020 + -1.0 893,020 + +0.6 893,020 + +0.9 893,020 + -0.4 893,020 + -0.7 893,020 + -2.2 893,020 + +0.3 893,020 + +0.8 893,020 + +0.4 893,020 + -0.5 893,020 + -2.0 893,020 + -0.7 893,020 + -0.7 893,020 + -0.3 893,021 - -1.0 893,021 - -0.7 893,021 - +0.4 893,021 - -0.7 893,021 - -1.1 893,023 + -1.2 893,023 + +0.9 893,023 + -1.4 893,023 + -2.2 893,023 + -0.6 893,023 + -0.7 893,024 - +0.0 893,024 - -0.4 893,024 - -1.0 893,024 - -0.5 893,024 - -0.2 893,024 - +1.6 893,024 - +0.0 893,024 - +0.2 893,024 - -0.1 893,024 - -0.3 893,025 + -1.8 893,026 - -0.5 893,097 + +1.0 893,097 + -1.5 893,098 - -0.5 893,098 - -1.7 893,108 + -0.4 893,108 + +0.5 893,109 - +1.2 893,109 - -0.4 893,109 - +0.4 893,109 - -0.9 893,158 + +0.3 893,158 + +0.0 893,158 + -1.7 893,158 + -0.8 893,158 + +1.6 893,159 - -0.7 893,159 - -1.6 893,159 - -1.7 893,159 - -1.1 893,159 - +0.3 893,159 - +0.6 893,159 - -0.1 893,159 - +0.4 893,159 - +0.2 893,159 - -0.7 893,159 - -1.0 893,187 + +0.0 893,187 + -0.1 893,287 + DZA65_RS04280 0.27 -0.8 893,287 + DZA65_RS04280 0.27 -1.0 893,288 - DZA65_RS04280 0.27 +0.0 893,288 - DZA65_RS04280 0.27 +0.3 893,381 + DZA65_RS04280 0.49 +0.9 893,382 - DZA65_RS04280 0.49 -0.9 893,382 - +1.6 893,384 + DZA65_RS04280 0.49 +1.0 893,384 + DZA65_RS04280 0.49 +1.0 893,384 + DZA65_RS04280 0.49 +0.0 893,384 + DZA65_RS04280 0.49 +0.6 893,384 + DZA65_RS04280 0.49 -0.1 893,385 - DZA65_RS04280 0.50 -0.6 893,385 - DZA65_RS04280 0.50 +0.6 893,385 - DZA65_RS04280 0.50 -1.1 893,385 - DZA65_RS04280 0.50 +0.0 893,385 - DZA65_RS04280 0.50 -1.0 893,525 + DZA65_RS04280 0.82 -1.5 893,525 + DZA65_RS04280 0.82 -0.4 893,525 + DZA65_RS04280 0.82 +0.1 893,526 - DZA65_RS04280 0.83 -0.2 893,526 - DZA65_RS04280 0.83 -0.2 893,526 - DZA65_RS04280 0.83 -0.7 893,526 - DZA65_RS04280 0.83 +0.8 893,526 - DZA65_RS04280 0.83 -2.0 893,526 - DZA65_RS04280 0.83 -1.0 893,526 - DZA65_RS04280 0.83 +1.6 893,540 + DZA65_RS04280 0.86 +0.6 893,540 + DZA65_RS04280 0.86 -1.1 893,540 + DZA65_RS04280 0.86 +0.3 893,540 + +1.6 893,540 + DZA65_RS04280 0.86 -1.4 893,540 + DZA65_RS04280 0.86 -1.1 893,594 + -0.3 893,657 - -1.4 893,657 - -0.5 893,752 + +0.1 893,756 + -0.4 893,756 + +0.3 893,756 + -0.7 893,756 + -0.2 893,757 - -0.8 893,757 - -1.0 893,757 - -0.8 893,757 - -0.7 893,757 - +0.8 893,757 - +0.0 893,849 + -1.0 893,850 - +0.2 893,870 + -0.4 893,870 + +0.0 893,870 + +0.9 893,870 + +0.0 893,870 + +0.3 893,870 + +0.0 893,871 - -0.4 893,871 - -1.8 893,871 - -0.7 893,871 - +0.3 893,871 - +0.1 893,871 - +0.3 893,871 - +0.5 893,958 + -0.8 893,958 + +1.4
Or see this region's nucleotide sequence