Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS04265 and DZA65_RS04270 are separated by 57 nucleotides DZA65_RS04270 and DZA65_RS04275 overlap by 4 nucleotides
DZA65_RS04265: DZA65_RS04265 - NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase, at 889,239 to 891,518
_RS04265
DZA65_RS04270: DZA65_RS04270 - YaiI/YqxD family protein, at 891,576 to 892,025
_RS04270
DZA65_RS04275: DZA65_RS04275 - oxygen-dependent coproporphyrinogen oxidase, at 892,022 to 892,960
_RS04275
Position (kb) 891
892
893 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 890.767 kb on - strand, within DZA65_RS04265 at 890.778 kb on + strand, within DZA65_RS04265 at 890.779 kb on - strand, within DZA65_RS04265 at 890.779 kb on - strand, within DZA65_RS04265 at 890.912 kb on + strand, within DZA65_RS04265 at 890.916 kb on + strand, within DZA65_RS04265 at 890.916 kb on + strand, within DZA65_RS04265 at 890.916 kb on + strand, within DZA65_RS04265 at 890.916 kb on + strand, within DZA65_RS04265 at 890.916 kb on + strand, within DZA65_RS04265 at 890.916 kb on + strand, within DZA65_RS04265 at 890.916 kb on + strand, within DZA65_RS04265 at 890.916 kb on + strand, within DZA65_RS04265 at 890.916 kb on + strand, within DZA65_RS04265 at 890.917 kb on - strand, within DZA65_RS04265 at 890.917 kb on - strand, within DZA65_RS04265 at 890.917 kb on - strand, within DZA65_RS04265 at 890.939 kb on - strand, within DZA65_RS04265 at 891.014 kb on + strand, within DZA65_RS04265 at 891.014 kb on + strand, within DZA65_RS04265 at 891.014 kb on + strand, within DZA65_RS04265 at 891.014 kb on + strand, within DZA65_RS04265 at 891.014 kb on + strand, within DZA65_RS04265 at 891.015 kb on - strand, within DZA65_RS04265 at 891.015 kb on - strand, within DZA65_RS04265 at 891.020 kb on + strand, within DZA65_RS04265 at 891.033 kb on + strand, within DZA65_RS04265 at 891.033 kb on + strand, within DZA65_RS04265 at 891.033 kb on + strand, within DZA65_RS04265 at 891.033 kb on + strand, within DZA65_RS04265 at 891.033 kb on + strand, within DZA65_RS04265 at 891.033 kb on + strand, within DZA65_RS04265 at 891.033 kb on + strand, within DZA65_RS04265 at 891.033 kb on + strand, within DZA65_RS04265 at 891.033 kb on + strand, within DZA65_RS04265 at 891.033 kb on + strand, within DZA65_RS04265 at 891.033 kb on + strand, within DZA65_RS04265 at 891.033 kb on + strand, within DZA65_RS04265 at 891.033 kb on + strand, within DZA65_RS04265 at 891.033 kb on + strand, within DZA65_RS04265 at 891.034 kb on - strand, within DZA65_RS04265 at 891.034 kb on - strand, within DZA65_RS04265 at 891.034 kb on - strand, within DZA65_RS04265 at 891.034 kb on - strand, within DZA65_RS04265 at 891.034 kb on - strand, within DZA65_RS04265 at 891.034 kb on - strand, within DZA65_RS04265 at 891.034 kb on - strand, within DZA65_RS04265 at 891.034 kb on - strand, within DZA65_RS04265 at 891.034 kb on - strand, within DZA65_RS04265 at 891.034 kb on - strand, within DZA65_RS04265 at 891.034 kb on - strand, within DZA65_RS04265 at 891.034 kb on - strand, within DZA65_RS04265 at 891.270 kb on - strand, within DZA65_RS04265 at 891.317 kb on + strand at 891.357 kb on + strand at 891.357 kb on + strand at 891.357 kb on + strand at 891.357 kb on + strand at 891.357 kb on + strand at 891.357 kb on + strand at 891.358 kb on - strand at 891.358 kb on - strand at 891.358 kb on - strand at 891.358 kb on - strand at 891.430 kb on + strand at 891.430 kb on + strand at 891.516 kb on + strand at 891.516 kb on + strand at 891.560 kb on + strand at 891.560 kb on + strand at 891.561 kb on - strand at 891.639 kb on + strand, within DZA65_RS04270 at 891.639 kb on + strand, within DZA65_RS04270 at 891.640 kb on - strand, within DZA65_RS04270 at 891.640 kb on - strand, within DZA65_RS04270 at 891.640 kb on - strand, within DZA65_RS04270 at 891.663 kb on + strand, within DZA65_RS04270 at 891.683 kb on + strand, within DZA65_RS04270 at 891.684 kb on - strand, within DZA65_RS04270 at 891.684 kb on - strand, within DZA65_RS04270 at 891.684 kb on - strand, within DZA65_RS04270 at 891.722 kb on + strand, within DZA65_RS04270 at 891.733 kb on + strand, within DZA65_RS04270 at 891.733 kb on + strand, within DZA65_RS04270 at 891.733 kb on + strand, within DZA65_RS04270 at 891.733 kb on + strand at 891.911 kb on + strand, within DZA65_RS04270 at 891.911 kb on + strand, within DZA65_RS04270 at 892.045 kb on + strand at 892.232 kb on + strand, within DZA65_RS04275 at 892.861 kb on + strand, within DZA65_RS04275 at 892.961 kb on - strand at 892.961 kb on - strand at 892.961 kb on - strand at 892.961 kb on - strand at 892.971 kb on - strand at 892.971 kb on - strand at 892.971 kb on - strand at 892.998 kb on + strand at 892.998 kb on + strand at 893.011 kb on + strand at 893.012 kb on - strand at 893.012 kb on - strand at 893.012 kb on - strand at 893.012 kb on - strand at 893.012 kb on - strand at 893.014 kb on + strand at 893.014 kb on + strand at 893.014 kb on + strand at 893.015 kb on - strand at 893.015 kb on - strand at 893.015 kb on - strand at 893.015 kb on - strand at 893.020 kb on + strand at 893.020 kb on + strand at 893.020 kb on + strand at 893.020 kb on + strand at 893.020 kb on + strand at 893.020 kb on + strand at 893.020 kb on + strand at 893.020 kb on + strand at 893.020 kb on + strand at 893.020 kb on + strand at 893.020 kb on + strand at 893.020 kb on + strand at 893.020 kb on + strand at 893.020 kb on + strand at 893.021 kb on - strand at 893.021 kb on - strand at 893.021 kb on - strand at 893.021 kb on - strand at 893.021 kb on - strand at 893.023 kb on + strand at 893.023 kb on + strand at 893.023 kb on + strand at 893.023 kb on + strand at 893.023 kb on + strand at 893.023 kb on + strand at 893.024 kb on - strand at 893.024 kb on - strand at 893.024 kb on - strand at 893.024 kb on - strand at 893.024 kb on - strand at 893.024 kb on - strand at 893.024 kb on - strand at 893.024 kb on - strand at 893.024 kb on - strand at 893.024 kb on - strand at 893.025 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 890,767 - DZA65_RS04265 0.67 +0.0 890,778 + DZA65_RS04265 0.68 +0.4 890,779 - DZA65_RS04265 0.68 +0.2 890,779 - DZA65_RS04265 0.68 -1.7 890,912 + DZA65_RS04265 0.73 -0.2 890,916 + DZA65_RS04265 0.74 -0.7 890,916 + DZA65_RS04265 0.74 -0.3 890,916 + DZA65_RS04265 0.74 -1.0 890,916 + DZA65_RS04265 0.74 -3.0 890,916 + DZA65_RS04265 0.74 -0.7 890,916 + DZA65_RS04265 0.74 -0.2 890,916 + DZA65_RS04265 0.74 -0.7 890,916 + DZA65_RS04265 0.74 -0.7 890,916 + DZA65_RS04265 0.74 -1.3 890,917 - DZA65_RS04265 0.74 -0.9 890,917 - DZA65_RS04265 0.74 -0.5 890,917 - DZA65_RS04265 0.74 -1.4 890,939 - DZA65_RS04265 0.75 -1.1 891,014 + DZA65_RS04265 0.78 -1.0 891,014 + DZA65_RS04265 0.78 -1.6 891,014 + DZA65_RS04265 0.78 +0.2 891,014 + DZA65_RS04265 0.78 -2.3 891,014 + DZA65_RS04265 0.78 -0.7 891,015 - DZA65_RS04265 0.78 -0.4 891,015 - DZA65_RS04265 0.78 -0.7 891,020 + DZA65_RS04265 0.78 +1.6 891,033 + DZA65_RS04265 0.79 -0.3 891,033 + DZA65_RS04265 0.79 -0.2 891,033 + DZA65_RS04265 0.79 -0.7 891,033 + DZA65_RS04265 0.79 -0.7 891,033 + DZA65_RS04265 0.79 -0.3 891,033 + DZA65_RS04265 0.79 -0.4 891,033 + DZA65_RS04265 0.79 -0.2 891,033 + DZA65_RS04265 0.79 +0.8 891,033 + DZA65_RS04265 0.79 -2.0 891,033 + DZA65_RS04265 0.79 -0.7 891,033 + DZA65_RS04265 0.79 +0.4 891,033 + DZA65_RS04265 0.79 +1.1 891,033 + DZA65_RS04265 0.79 +0.1 891,033 + DZA65_RS04265 0.79 -0.1 891,034 - DZA65_RS04265 0.79 -0.3 891,034 - DZA65_RS04265 0.79 +0.0 891,034 - DZA65_RS04265 0.79 +0.6 891,034 - DZA65_RS04265 0.79 -0.2 891,034 - DZA65_RS04265 0.79 +0.3 891,034 - DZA65_RS04265 0.79 +1.3 891,034 - DZA65_RS04265 0.79 -1.5 891,034 - DZA65_RS04265 0.79 +0.7 891,034 - DZA65_RS04265 0.79 -2.7 891,034 - DZA65_RS04265 0.79 +0.5 891,034 - DZA65_RS04265 0.79 -0.4 891,034 - DZA65_RS04265 0.79 +0.3 891,270 - DZA65_RS04265 0.89 -1.3 891,317 + +0.1 891,357 + -0.2 891,357 + +0.9 891,357 + -1.9 891,357 + +0.2 891,357 + -1.1 891,357 + -2.1 891,358 - +1.0 891,358 - +1.6 891,358 - +1.0 891,358 - +1.9 891,430 + -1.7 891,430 + +2.7 891,516 + +0.3 891,516 + -0.6 891,560 + -1.6 891,560 + -1.2 891,561 - -1.7 891,639 + DZA65_RS04270 0.14 +0.4 891,639 + DZA65_RS04270 0.14 -2.0 891,640 - DZA65_RS04270 0.14 +0.1 891,640 - DZA65_RS04270 0.14 -0.4 891,640 - DZA65_RS04270 0.14 +0.0 891,663 + DZA65_RS04270 0.19 -1.8 891,683 + DZA65_RS04270 0.24 -1.5 891,684 - DZA65_RS04270 0.24 -1.0 891,684 - DZA65_RS04270 0.24 -0.7 891,684 - DZA65_RS04270 0.24 -0.4 891,722 + DZA65_RS04270 0.32 -0.7 891,733 + DZA65_RS04270 0.35 -0.1 891,733 + DZA65_RS04270 0.35 +0.0 891,733 + DZA65_RS04270 0.35 +0.6 891,733 + +1.6 891,911 + DZA65_RS04270 0.74 +0.6 891,911 + DZA65_RS04270 0.74 -0.7 892,045 + -1.1 892,232 + DZA65_RS04275 0.22 -1.4 892,861 + DZA65_RS04275 0.89 -2.1 892,961 - -0.7 892,961 - -0.2 892,961 - -0.7 892,961 - -1.6 892,971 - -1.4 892,971 - -1.2 892,971 - -1.6 892,998 + -1.0 892,998 + +0.1 893,011 + +0.8 893,012 - -0.2 893,012 - -0.1 893,012 - +0.2 893,012 - +0.0 893,012 - +0.5 893,014 + +1.2 893,014 + -0.9 893,014 + -0.1 893,015 - -0.3 893,015 - -0.7 893,015 - -0.8 893,015 - +0.9 893,020 + -1.0 893,020 + +0.6 893,020 + +0.9 893,020 + -0.4 893,020 + -0.7 893,020 + -2.2 893,020 + +0.3 893,020 + +0.8 893,020 + +0.4 893,020 + -0.5 893,020 + -2.0 893,020 + -0.7 893,020 + -0.7 893,020 + -0.3 893,021 - -1.0 893,021 - -0.7 893,021 - +0.4 893,021 - -0.7 893,021 - -1.1 893,023 + -1.2 893,023 + +0.9 893,023 + -1.4 893,023 + -2.2 893,023 + -0.6 893,023 + -0.7 893,024 - +0.0 893,024 - -0.4 893,024 - -1.0 893,024 - -0.5 893,024 - -0.2 893,024 - +1.6 893,024 - +0.0 893,024 - +0.2 893,024 - -0.1 893,024 - -0.3 893,025 + -1.8
Or see this region's nucleotide sequence