Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS04235 and DZA65_RS04240 are separated by 83 nucleotides DZA65_RS04240 and DZA65_RS04250 are separated by 172 nucleotides
DZA65_RS04235: DZA65_RS04235 - DNA repair protein RecN, at 883,126 to 884,787
_RS04235
DZA65_RS04240: DZA65_RS04240 - NAD(+) kinase, at 884,871 to 885,749
_RS04240
DZA65_RS04250: DZA65_RS04250 - nucleotide exchange factor GrpE, at 885,922 to 886,509
_RS04250
Position (kb) 884
885
886 Strain fitness (log2 ratio) -2
-1
0
1 at 883.892 kb on + strand, within DZA65_RS04235 at 883.892 kb on + strand, within DZA65_RS04235 at 883.893 kb on - strand, within DZA65_RS04235 at 883.893 kb on - strand, within DZA65_RS04235 at 883.893 kb on - strand, within DZA65_RS04235 at 883.893 kb on - strand, within DZA65_RS04235 at 883.893 kb on - strand, within DZA65_RS04235 at 883.917 kb on + strand, within DZA65_RS04235 at 883.918 kb on - strand, within DZA65_RS04235 at 883.918 kb on - strand, within DZA65_RS04235 at 883.928 kb on + strand, within DZA65_RS04235 at 884.147 kb on + strand, within DZA65_RS04235 at 884.147 kb on + strand, within DZA65_RS04235 at 884.147 kb on + strand, within DZA65_RS04235 at 884.147 kb on + strand, within DZA65_RS04235 at 884.147 kb on + strand, within DZA65_RS04235 at 884.148 kb on - strand, within DZA65_RS04235 at 884.148 kb on - strand, within DZA65_RS04235 at 884.148 kb on - strand, within DZA65_RS04235 at 884.148 kb on - strand, within DZA65_RS04235 at 884.148 kb on - strand, within DZA65_RS04235 at 884.148 kb on - strand, within DZA65_RS04235 at 884.148 kb on - strand, within DZA65_RS04235 at 884.169 kb on - strand, within DZA65_RS04235 at 884.214 kb on - strand, within DZA65_RS04235 at 884.323 kb on + strand, within DZA65_RS04235 at 884.323 kb on + strand, within DZA65_RS04235 at 884.323 kb on + strand, within DZA65_RS04235 at 884.323 kb on + strand, within DZA65_RS04235 at 884.324 kb on - strand, within DZA65_RS04235 at 884.324 kb on - strand, within DZA65_RS04235 at 884.324 kb on - strand, within DZA65_RS04235 at 884.324 kb on - strand, within DZA65_RS04235 at 884.324 kb on - strand at 884.324 kb on - strand, within DZA65_RS04235 at 884.324 kb on - strand, within DZA65_RS04235 at 884.377 kb on + strand, within DZA65_RS04235 at 884.377 kb on + strand, within DZA65_RS04235 at 884.378 kb on - strand, within DZA65_RS04235 at 884.378 kb on - strand, within DZA65_RS04235 at 884.378 kb on - strand, within DZA65_RS04235 at 884.571 kb on + strand, within DZA65_RS04235 at 884.571 kb on + strand, within DZA65_RS04235 at 884.572 kb on - strand, within DZA65_RS04235 at 884.572 kb on - strand, within DZA65_RS04235 at 884.673 kb on + strand at 884.673 kb on + strand at 884.673 kb on + strand at 884.673 kb on + strand at 884.674 kb on - strand at 884.674 kb on - strand at 884.674 kb on - strand at 884.763 kb on + strand at 884.764 kb on - strand at 884.790 kb on + strand at 884.790 kb on + strand at 884.791 kb on - strand at 884.800 kb on + strand at 884.800 kb on + strand at 884.801 kb on - strand at 884.801 kb on - strand at 884.811 kb on - strand at 884.811 kb on - strand at 884.820 kb on + strand at 884.821 kb on - strand at 884.824 kb on + strand at 884.825 kb on - strand at 884.829 kb on + strand at 884.831 kb on + strand at 884.847 kb on - strand at 884.866 kb on + strand at 884.866 kb on + strand at 885.761 kb on - strand at 885.761 kb on - strand at 885.761 kb on - strand at 885.761 kb on - strand at 885.761 kb on - strand at 885.761 kb on - strand at 885.761 kb on - strand at 885.761 kb on - strand at 885.761 kb on - strand at 885.761 kb on - strand at 885.817 kb on + strand at 885.818 kb on - strand at 885.818 kb on - strand at 885.818 kb on - strand at 885.818 kb on - strand at 885.818 kb on - strand at 885.818 kb on - strand at 885.818 kb on - strand at 885.818 kb on - strand at 885.818 kb on - strand at 885.876 kb on + strand at 885.888 kb on + strand at 886.507 kb on + strand at 886.508 kb on - strand at 886.508 kb on - strand at 886.508 kb on - strand at 886.614 kb on - strand at 886.631 kb on + strand at 886.632 kb on - strand at 886.632 kb on - strand at 886.632 kb on - strand at 886.632 kb on - strand at 886.691 kb on + strand at 886.692 kb on - strand at 886.692 kb on - strand at 886.695 kb on + strand at 886.695 kb on + strand at 886.695 kb on + strand at 886.696 kb on - strand at 886.696 kb on - strand at 886.696 kb on - strand at 886.696 kb on - strand at 886.696 kb on - strand at 886.696 kb on - strand at 886.709 kb on + strand at 886.709 kb on + strand at 886.710 kb on - strand at 886.713 kb on + strand at 886.714 kb on - strand at 886.721 kb on + strand at 886.722 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 883,892 + DZA65_RS04235 0.46 +0.6 883,892 + DZA65_RS04235 0.46 -0.8 883,893 - DZA65_RS04235 0.46 -0.5 883,893 - DZA65_RS04235 0.46 -0.4 883,893 - DZA65_RS04235 0.46 -0.1 883,893 - DZA65_RS04235 0.46 -0.4 883,893 - DZA65_RS04235 0.46 -0.4 883,917 + DZA65_RS04235 0.48 -0.4 883,918 - DZA65_RS04235 0.48 -0.7 883,918 - DZA65_RS04235 0.48 -0.6 883,928 + DZA65_RS04235 0.48 -0.6 884,147 + DZA65_RS04235 0.61 +0.6 884,147 + DZA65_RS04235 0.61 -1.4 884,147 + DZA65_RS04235 0.61 -0.4 884,147 + DZA65_RS04235 0.61 -1.1 884,147 + DZA65_RS04235 0.61 -0.1 884,148 - DZA65_RS04235 0.61 -0.7 884,148 - DZA65_RS04235 0.61 +0.0 884,148 - DZA65_RS04235 0.61 +0.6 884,148 - DZA65_RS04235 0.61 +1.2 884,148 - DZA65_RS04235 0.61 -2.2 884,148 - DZA65_RS04235 0.61 -0.7 884,148 - DZA65_RS04235 0.61 -1.4 884,169 - DZA65_RS04235 0.63 -0.7 884,214 - DZA65_RS04235 0.65 -1.4 884,323 + DZA65_RS04235 0.72 -1.1 884,323 + DZA65_RS04235 0.72 -1.0 884,323 + DZA65_RS04235 0.72 -0.7 884,323 + DZA65_RS04235 0.72 -0.4 884,324 - DZA65_RS04235 0.72 +0.4 884,324 - DZA65_RS04235 0.72 +1.0 884,324 - DZA65_RS04235 0.72 +0.6 884,324 - DZA65_RS04235 0.72 +0.3 884,324 - +0.6 884,324 - DZA65_RS04235 0.72 -0.4 884,324 - DZA65_RS04235 0.72 -1.0 884,377 + DZA65_RS04235 0.75 -0.7 884,377 + DZA65_RS04235 0.75 -1.4 884,378 - DZA65_RS04235 0.75 +0.0 884,378 - DZA65_RS04235 0.75 -0.4 884,378 - DZA65_RS04235 0.75 -0.1 884,571 + DZA65_RS04235 0.87 -2.2 884,571 + DZA65_RS04235 0.87 -1.3 884,572 - DZA65_RS04235 0.87 -0.2 884,572 - DZA65_RS04235 0.87 +0.6 884,673 + -1.1 884,673 + -2.2 884,673 + +0.3 884,673 + +1.3 884,674 - +0.0 884,674 - +0.5 884,674 - -1.2 884,763 + +0.4 884,764 - -0.7 884,790 + +0.6 884,790 + -0.2 884,791 - +0.2 884,800 + +0.2 884,800 + -0.9 884,801 - -1.7 884,801 - -0.7 884,811 - +0.0 884,811 - -1.0 884,820 + -1.2 884,821 - +0.8 884,824 + +0.0 884,825 - +0.2 884,829 + -0.3 884,831 + -1.3 884,847 - -1.4 884,866 + -0.2 884,866 + +1.1 885,761 - -0.6 885,761 - -1.0 885,761 - +0.1 885,761 - -1.9 885,761 - -1.6 885,761 - +0.9 885,761 - +0.0 885,761 - -0.4 885,761 - -1.1 885,761 - +0.6 885,817 + -0.2 885,818 - +0.6 885,818 - -1.7 885,818 - +0.0 885,818 - +0.0 885,818 - -0.2 885,818 - -1.4 885,818 - -0.7 885,818 - +0.9 885,818 - +0.3 885,876 + -0.9 885,888 + +0.8 886,507 + +0.0 886,508 - -1.2 886,508 - -1.0 886,508 - -0.4 886,614 - -1.0 886,631 + -0.2 886,632 - -0.4 886,632 - +0.3 886,632 - -0.5 886,632 - -1.9 886,691 + -1.2 886,692 - -0.7 886,692 - -0.4 886,695 + +0.0 886,695 + +0.2 886,695 + -0.8 886,696 - -1.9 886,696 - +0.5 886,696 - -1.4 886,696 - -0.5 886,696 - +1.3 886,696 - +1.0 886,709 + +1.2 886,709 + -0.6 886,710 - -0.4 886,713 + -2.3 886,714 - -0.6 886,721 + -0.9 886,722 - +0.7
Or see this region's nucleotide sequence