Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS04215 and DZA65_RS04220 are separated by 155 nucleotides DZA65_RS04220 and DZA65_RS04225 overlap by 8 nucleotides DZA65_RS04225 and DZA65_RS04230 are separated by 58 nucleotides DZA65_RS04230 and DZA65_RS04235 are separated by 111 nucleotides
DZA65_RS04215: DZA65_RS04215 - SsrA-binding protein SmpB, at 881,253 to 881,735
_RS04215
DZA65_RS04220: DZA65_RS04220 - type II toxin-antitoxin system RatA family toxin, at 881,891 to 882,325
_RS04220
DZA65_RS04225: DZA65_RS04225 - RnfH family protein, at 882,318 to 882,611
_RS04225
DZA65_RS04230: DZA65_RS04230 - outer membrane protein assembly factor BamE, at 882,670 to 883,014
_RS04230
DZA65_RS04235: DZA65_RS04235 - DNA repair protein RecN, at 883,126 to 884,787
_RS04235
Position (kb) 882
883 Strain fitness (log2 ratio) -2
-1
0
1 at 881.410 kb on + strand, within DZA65_RS04215 at 881.410 kb on + strand, within DZA65_RS04215 at 881.411 kb on - strand, within DZA65_RS04215 at 881.471 kb on + strand, within DZA65_RS04215 at 881.572 kb on + strand, within DZA65_RS04215 at 881.572 kb on + strand, within DZA65_RS04215 at 881.573 kb on - strand, within DZA65_RS04215 at 881.573 kb on - strand, within DZA65_RS04215 at 881.666 kb on - strand, within DZA65_RS04215 at 881.666 kb on - strand, within DZA65_RS04215 at 881.666 kb on - strand, within DZA65_RS04215 at 881.714 kb on + strand at 881.747 kb on + strand at 881.748 kb on - strand at 881.748 kb on - strand at 881.748 kb on - strand at 881.748 kb on - strand at 881.749 kb on + strand at 881.749 kb on + strand at 881.750 kb on - strand at 881.750 kb on - strand at 881.791 kb on - strand at 881.791 kb on - strand at 881.854 kb on + strand at 881.857 kb on + strand at 881.857 kb on + strand at 881.857 kb on + strand at 881.858 kb on - strand at 881.858 kb on - strand at 881.858 kb on - strand at 881.858 kb on - strand at 881.872 kb on - strand at 881.890 kb on + strand at 881.891 kb on - strand at 881.943 kb on - strand, within DZA65_RS04220 at 881.945 kb on - strand, within DZA65_RS04220 at 881.945 kb on - strand, within DZA65_RS04220 at 881.945 kb on - strand at 882.089 kb on - strand, within DZA65_RS04220 at 882.109 kb on + strand, within DZA65_RS04220 at 882.167 kb on - strand, within DZA65_RS04220 at 882.190 kb on + strand, within DZA65_RS04220 at 882.190 kb on + strand, within DZA65_RS04220 at 882.190 kb on + strand, within DZA65_RS04220 at 882.190 kb on + strand, within DZA65_RS04220 at 882.191 kb on - strand, within DZA65_RS04220 at 882.191 kb on - strand, within DZA65_RS04220 at 882.191 kb on - strand, within DZA65_RS04220 at 882.277 kb on + strand, within DZA65_RS04220 at 882.277 kb on + strand, within DZA65_RS04220 at 882.314 kb on + strand at 882.314 kb on + strand at 882.314 kb on + strand at 882.315 kb on - strand at 882.315 kb on - strand at 882.346 kb on - strand at 882.366 kb on + strand at 882.367 kb on - strand, within DZA65_RS04225 at 882.414 kb on - strand, within DZA65_RS04225 at 882.508 kb on + strand, within DZA65_RS04225 at 882.508 kb on + strand, within DZA65_RS04225 at 882.508 kb on + strand, within DZA65_RS04225 at 882.508 kb on + strand, within DZA65_RS04225 at 882.508 kb on + strand, within DZA65_RS04225 at 882.509 kb on - strand, within DZA65_RS04225 at 882.509 kb on - strand, within DZA65_RS04225 at 882.509 kb on - strand, within DZA65_RS04225 at 882.560 kb on + strand, within DZA65_RS04225 at 882.568 kb on + strand, within DZA65_RS04225 at 882.569 kb on - strand, within DZA65_RS04225 at 882.671 kb on + strand at 882.671 kb on + strand at 882.671 kb on + strand at 882.671 kb on + strand at 882.672 kb on - strand at 882.672 kb on - strand at 882.672 kb on - strand at 882.672 kb on - strand at 882.672 kb on - strand at 882.672 kb on - strand at 882.788 kb on + strand, within DZA65_RS04230 at 882.788 kb on + strand, within DZA65_RS04230 at 882.788 kb on + strand, within DZA65_RS04230 at 882.788 kb on + strand, within DZA65_RS04230 at 882.788 kb on + strand, within DZA65_RS04230 at 882.788 kb on + strand, within DZA65_RS04230 at 882.788 kb on + strand, within DZA65_RS04230 at 882.789 kb on - strand, within DZA65_RS04230 at 882.789 kb on - strand at 882.842 kb on + strand, within DZA65_RS04230 at 882.842 kb on + strand, within DZA65_RS04230 at 882.842 kb on + strand, within DZA65_RS04230 at 882.842 kb on + strand, within DZA65_RS04230 at 882.843 kb on - strand, within DZA65_RS04230 at 882.843 kb on - strand, within DZA65_RS04230 at 882.843 kb on - strand, within DZA65_RS04230 at 882.843 kb on - strand, within DZA65_RS04230 at 882.843 kb on - strand, within DZA65_RS04230 at 882.883 kb on + strand, within DZA65_RS04230 at 882.884 kb on - strand, within DZA65_RS04230 at 882.902 kb on + strand, within DZA65_RS04230 at 882.902 kb on + strand, within DZA65_RS04230 at 882.903 kb on - strand, within DZA65_RS04230 at 882.903 kb on - strand, within DZA65_RS04230 at 882.903 kb on - strand, within DZA65_RS04230 at 882.903 kb on - strand, within DZA65_RS04230 at 882.903 kb on - strand, within DZA65_RS04230 at 882.934 kb on + strand, within DZA65_RS04230 at 882.934 kb on + strand, within DZA65_RS04230 at 882.934 kb on + strand, within DZA65_RS04230 at 882.935 kb on - strand, within DZA65_RS04230 at 882.969 kb on + strand, within DZA65_RS04230 at 882.969 kb on + strand, within DZA65_RS04230 at 882.969 kb on + strand, within DZA65_RS04230 at 882.969 kb on + strand, within DZA65_RS04230 at 882.969 kb on + strand, within DZA65_RS04230 at 882.969 kb on + strand, within DZA65_RS04230 at 882.969 kb on + strand, within DZA65_RS04230 at 882.969 kb on + strand, within DZA65_RS04230 at 882.970 kb on - strand, within DZA65_RS04230 at 882.970 kb on - strand, within DZA65_RS04230 at 882.970 kb on - strand, within DZA65_RS04230 at 883.005 kb on + strand at 883.014 kb on + strand at 883.021 kb on + strand at 883.021 kb on + strand at 883.021 kb on + strand at 883.021 kb on + strand at 883.021 kb on + strand at 883.021 kb on + strand at 883.021 kb on + strand at 883.021 kb on + strand at 883.022 kb on - strand at 883.022 kb on - strand at 883.022 kb on - strand at 883.022 kb on - strand at 883.022 kb on - strand at 883.022 kb on - strand at 883.022 kb on - strand at 883.038 kb on + strand at 883.038 kb on + strand at 883.038 kb on + strand at 883.039 kb on - strand at 883.052 kb on + strand at 883.052 kb on + strand at 883.052 kb on + strand at 883.052 kb on + strand at 883.053 kb on - strand at 883.053 kb on - strand at 883.053 kb on - strand at 883.055 kb on + strand at 883.055 kb on + strand at 883.055 kb on + strand at 883.055 kb on + strand at 883.055 kb on + strand at 883.056 kb on - strand at 883.056 kb on - strand at 883.056 kb on - strand at 883.056 kb on - strand at 883.056 kb on - strand at 883.056 kb on - strand at 883.056 kb on - strand at 883.056 kb on - strand at 883.056 kb on - strand at 883.056 kb on - strand at 883.093 kb on - strand at 883.127 kb on + strand at 883.128 kb on - strand at 883.269 kb on + strand at 883.270 kb on - strand at 883.280 kb on + strand at 883.280 kb on + strand at 883.280 kb on + strand at 883.280 kb on + strand at 883.281 kb on - strand at 883.281 kb on - strand at 883.281 kb on - strand at 883.281 kb on - strand at 883.281 kb on - strand at 883.281 kb on - strand at 883.281 kb on - strand at 883.339 kb on - strand, within DZA65_RS04235 at 883.339 kb on - strand, within DZA65_RS04235 at 883.461 kb on + strand, within DZA65_RS04235 at 883.498 kb on + strand, within DZA65_RS04235 at 883.498 kb on + strand, within DZA65_RS04235 at 883.498 kb on + strand, within DZA65_RS04235 at 883.498 kb on + strand, within DZA65_RS04235 at 883.499 kb on - strand, within DZA65_RS04235 at 883.536 kb on + strand, within DZA65_RS04235 at 883.536 kb on + strand, within DZA65_RS04235 at 883.536 kb on + strand, within DZA65_RS04235 at 883.537 kb on - strand, within DZA65_RS04235
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 881,410 + DZA65_RS04215 0.33 -1.0 881,410 + DZA65_RS04215 0.33 +0.1 881,411 - DZA65_RS04215 0.33 +0.0 881,471 + DZA65_RS04215 0.45 -0.4 881,572 + DZA65_RS04215 0.66 +1.6 881,572 + DZA65_RS04215 0.66 -1.1 881,573 - DZA65_RS04215 0.66 +1.3 881,573 - DZA65_RS04215 0.66 +0.9 881,666 - DZA65_RS04215 0.86 -1.2 881,666 - DZA65_RS04215 0.86 -0.7 881,666 - DZA65_RS04215 0.86 -0.4 881,714 + -0.7 881,747 + -1.2 881,748 - +0.1 881,748 - -0.2 881,748 - -0.2 881,748 - -1.5 881,749 + +0.6 881,749 + -2.6 881,750 - -0.1 881,750 - -0.1 881,791 - +1.0 881,791 - -1.4 881,854 + -0.5 881,857 + +0.2 881,857 + +0.0 881,857 + -0.7 881,858 - -2.0 881,858 - -1.4 881,858 - -1.7 881,858 - -0.4 881,872 - -0.4 881,890 + -1.2 881,891 - -1.2 881,943 - DZA65_RS04220 0.12 -2.1 881,945 - DZA65_RS04220 0.12 -0.4 881,945 - DZA65_RS04220 0.12 +0.9 881,945 - +0.6 882,089 - DZA65_RS04220 0.46 +1.0 882,109 + DZA65_RS04220 0.50 -1.2 882,167 - DZA65_RS04220 0.63 +0.0 882,190 + DZA65_RS04220 0.69 -1.6 882,190 + DZA65_RS04220 0.69 -0.5 882,190 + DZA65_RS04220 0.69 -1.7 882,190 + DZA65_RS04220 0.69 -1.5 882,191 - DZA65_RS04220 0.69 -1.6 882,191 - DZA65_RS04220 0.69 -1.6 882,191 - DZA65_RS04220 0.69 -0.2 882,277 + DZA65_RS04220 0.89 +0.6 882,277 + DZA65_RS04220 0.89 -0.7 882,314 + -0.4 882,314 + +0.0 882,314 + +0.2 882,315 - +0.6 882,315 - -2.4 882,346 - -0.4 882,366 + -0.4 882,367 - DZA65_RS04225 0.17 -0.3 882,414 - DZA65_RS04225 0.33 -0.2 882,508 + DZA65_RS04225 0.65 -0.1 882,508 + DZA65_RS04225 0.65 -1.9 882,508 + DZA65_RS04225 0.65 -1.2 882,508 + DZA65_RS04225 0.65 +0.0 882,508 + DZA65_RS04225 0.65 -0.9 882,509 - DZA65_RS04225 0.65 -1.6 882,509 - DZA65_RS04225 0.65 -2.0 882,509 - DZA65_RS04225 0.65 -2.3 882,560 + DZA65_RS04225 0.82 -0.9 882,568 + DZA65_RS04225 0.85 -0.3 882,569 - DZA65_RS04225 0.85 +0.0 882,671 + -1.5 882,671 + -0.7 882,671 + -1.4 882,671 + -1.4 882,672 - -1.5 882,672 - +0.0 882,672 - +0.6 882,672 - -0.9 882,672 - -1.9 882,672 - -0.2 882,788 + DZA65_RS04230 0.34 -0.1 882,788 + DZA65_RS04230 0.34 -0.1 882,788 + DZA65_RS04230 0.34 -0.1 882,788 + DZA65_RS04230 0.34 -1.2 882,788 + DZA65_RS04230 0.34 -0.9 882,788 + DZA65_RS04230 0.34 +0.0 882,788 + DZA65_RS04230 0.34 +0.0 882,789 - DZA65_RS04230 0.34 +0.3 882,789 - +1.6 882,842 + DZA65_RS04230 0.50 -0.4 882,842 + DZA65_RS04230 0.50 -0.8 882,842 + DZA65_RS04230 0.50 -1.1 882,842 + DZA65_RS04230 0.50 -1.2 882,843 - DZA65_RS04230 0.50 -1.9 882,843 - DZA65_RS04230 0.50 +0.0 882,843 - DZA65_RS04230 0.50 -1.8 882,843 - DZA65_RS04230 0.50 -1.7 882,843 - DZA65_RS04230 0.50 +0.7 882,883 + DZA65_RS04230 0.62 -2.0 882,884 - DZA65_RS04230 0.62 -0.4 882,902 + DZA65_RS04230 0.67 -0.2 882,902 + DZA65_RS04230 0.67 +0.2 882,903 - DZA65_RS04230 0.68 -0.4 882,903 - DZA65_RS04230 0.68 -0.7 882,903 - DZA65_RS04230 0.68 +1.0 882,903 - DZA65_RS04230 0.68 +0.3 882,903 - DZA65_RS04230 0.68 -0.5 882,934 + DZA65_RS04230 0.77 -0.7 882,934 + DZA65_RS04230 0.77 +0.4 882,934 + DZA65_RS04230 0.77 -0.7 882,935 - DZA65_RS04230 0.77 +0.1 882,969 + DZA65_RS04230 0.87 -2.3 882,969 + DZA65_RS04230 0.87 -0.7 882,969 + DZA65_RS04230 0.87 -1.2 882,969 + DZA65_RS04230 0.87 -0.8 882,969 + DZA65_RS04230 0.87 -0.7 882,969 + DZA65_RS04230 0.87 -0.4 882,969 + DZA65_RS04230 0.87 -0.4 882,969 + DZA65_RS04230 0.87 -1.0 882,970 - DZA65_RS04230 0.87 -0.5 882,970 - DZA65_RS04230 0.87 -0.7 882,970 - DZA65_RS04230 0.87 -1.0 883,005 + -0.4 883,014 + -1.7 883,021 + +0.6 883,021 + +0.4 883,021 + -0.4 883,021 + -0.3 883,021 + -1.0 883,021 + +0.9 883,021 + +1.4 883,021 + -0.5 883,022 - +0.5 883,022 - -1.7 883,022 - -2.2 883,022 - +0.3 883,022 - +1.0 883,022 - +0.0 883,022 - -0.2 883,038 + -2.6 883,038 + +1.6 883,038 + -0.0 883,039 - +1.2 883,052 + -1.3 883,052 + -1.0 883,052 + -0.6 883,052 + -1.0 883,053 - -0.7 883,053 - -0.4 883,053 - -0.7 883,055 + -0.7 883,055 + +0.6 883,055 + +0.6 883,055 + +0.4 883,055 + -0.4 883,056 - -0.1 883,056 - +0.0 883,056 - -0.5 883,056 - +0.1 883,056 - -0.6 883,056 - +0.3 883,056 - -1.2 883,056 - -0.7 883,056 - -0.7 883,056 - +0.1 883,093 - -1.6 883,127 + -0.1 883,128 - -0.2 883,269 + -0.4 883,270 - -0.4 883,280 + -0.4 883,280 + -2.3 883,280 + -1.2 883,280 + -1.1 883,281 - -1.3 883,281 - +0.0 883,281 - -0.4 883,281 - -0.4 883,281 - -0.7 883,281 - +0.8 883,281 - +1.0 883,339 - DZA65_RS04235 0.13 -0.9 883,339 - DZA65_RS04235 0.13 +0.6 883,461 + DZA65_RS04235 0.20 -0.6 883,498 + DZA65_RS04235 0.22 -0.3 883,498 + DZA65_RS04235 0.22 +0.9 883,498 + DZA65_RS04235 0.22 +0.3 883,498 + DZA65_RS04235 0.22 -2.3 883,499 - DZA65_RS04235 0.22 -1.0 883,536 + DZA65_RS04235 0.25 +0.6 883,536 + DZA65_RS04235 0.25 -1.0 883,536 + DZA65_RS04235 0.25 -0.3 883,537 - DZA65_RS04235 0.25 -0.6
Or see this region's nucleotide sequence