Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS04205 and DZA65_RS04215 are separated by 587 nucleotides DZA65_RS04215 and DZA65_RS04220 are separated by 155 nucleotides DZA65_RS04220 and DZA65_RS04225 overlap by 8 nucleotides DZA65_RS04225 and DZA65_RS04230 are separated by 58 nucleotides
DZA65_RS04205: DZA65_RS04205 - zinc ribbon domain-containing protein, at 880,162 to 880,665
_RS04205
DZA65_RS04215: DZA65_RS04215 - SsrA-binding protein SmpB, at 881,253 to 881,735
_RS04215
DZA65_RS04220: DZA65_RS04220 - type II toxin-antitoxin system RatA family toxin, at 881,891 to 882,325
_RS04220
DZA65_RS04225: DZA65_RS04225 - RnfH family protein, at 882,318 to 882,611
_RS04225
DZA65_RS04230: DZA65_RS04230 - outer membrane protein assembly factor BamE, at 882,670 to 883,014
_RS04230
Position (kb) 881
882 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 880.367 kb on + strand, within DZA65_RS04205 at 880.367 kb on + strand, within DZA65_RS04205 at 880.368 kb on - strand, within DZA65_RS04205 at 880.384 kb on + strand, within DZA65_RS04205 at 880.516 kb on + strand, within DZA65_RS04205 at 880.517 kb on - strand, within DZA65_RS04205 at 880.519 kb on - strand, within DZA65_RS04205 at 880.535 kb on - strand, within DZA65_RS04205 at 880.578 kb on + strand, within DZA65_RS04205 at 880.579 kb on - strand, within DZA65_RS04205 at 880.579 kb on - strand, within DZA65_RS04205 at 880.581 kb on + strand, within DZA65_RS04205 at 880.581 kb on + strand, within DZA65_RS04205 at 880.581 kb on + strand, within DZA65_RS04205 at 880.582 kb on - strand, within DZA65_RS04205 at 880.627 kb on + strand at 880.627 kb on + strand at 880.628 kb on - strand at 880.628 kb on - strand at 880.628 kb on - strand at 880.628 kb on - strand at 880.628 kb on - strand at 880.628 kb on - strand at 880.638 kb on + strand at 880.677 kb on + strand at 880.678 kb on - strand at 880.678 kb on - strand at 880.695 kb on + strand at 880.695 kb on + strand at 880.696 kb on - strand at 880.699 kb on + strand at 880.699 kb on + strand at 880.699 kb on + strand at 880.699 kb on + strand at 880.699 kb on + strand at 880.699 kb on + strand at 880.700 kb on - strand at 880.700 kb on - strand at 880.700 kb on - strand at 880.700 kb on - strand at 880.703 kb on - strand at 880.725 kb on - strand at 880.742 kb on + strand at 880.742 kb on + strand at 880.743 kb on - strand at 880.818 kb on + strand at 880.877 kb on - strand at 880.885 kb on - strand at 880.896 kb on + strand at 880.897 kb on - strand at 881.219 kb on - strand at 881.220 kb on + strand at 881.220 kb on + strand at 881.221 kb on - strand at 881.239 kb on + strand at 881.240 kb on - strand at 881.244 kb on + strand at 881.245 kb on - strand at 881.245 kb on - strand at 881.245 kb on - strand at 881.245 kb on - strand at 881.245 kb on - strand at 881.410 kb on + strand, within DZA65_RS04215 at 881.410 kb on + strand, within DZA65_RS04215 at 881.411 kb on - strand, within DZA65_RS04215 at 881.471 kb on + strand, within DZA65_RS04215 at 881.572 kb on + strand, within DZA65_RS04215 at 881.572 kb on + strand, within DZA65_RS04215 at 881.573 kb on - strand, within DZA65_RS04215 at 881.573 kb on - strand, within DZA65_RS04215 at 881.666 kb on - strand, within DZA65_RS04215 at 881.666 kb on - strand, within DZA65_RS04215 at 881.666 kb on - strand, within DZA65_RS04215 at 881.714 kb on + strand at 881.747 kb on + strand at 881.748 kb on - strand at 881.748 kb on - strand at 881.748 kb on - strand at 881.748 kb on - strand at 881.749 kb on + strand at 881.749 kb on + strand at 881.750 kb on - strand at 881.750 kb on - strand at 881.791 kb on - strand at 881.791 kb on - strand at 881.854 kb on + strand at 881.857 kb on + strand at 881.857 kb on + strand at 881.857 kb on + strand at 881.858 kb on - strand at 881.858 kb on - strand at 881.858 kb on - strand at 881.858 kb on - strand at 881.872 kb on - strand at 881.890 kb on + strand at 881.891 kb on - strand at 881.943 kb on - strand, within DZA65_RS04220 at 881.945 kb on - strand, within DZA65_RS04220 at 881.945 kb on - strand, within DZA65_RS04220 at 881.945 kb on - strand at 882.089 kb on - strand, within DZA65_RS04220 at 882.109 kb on + strand, within DZA65_RS04220 at 882.167 kb on - strand, within DZA65_RS04220 at 882.190 kb on + strand, within DZA65_RS04220 at 882.190 kb on + strand, within DZA65_RS04220 at 882.190 kb on + strand, within DZA65_RS04220 at 882.190 kb on + strand, within DZA65_RS04220 at 882.191 kb on - strand, within DZA65_RS04220 at 882.191 kb on - strand, within DZA65_RS04220 at 882.191 kb on - strand, within DZA65_RS04220 at 882.277 kb on + strand, within DZA65_RS04220 at 882.277 kb on + strand, within DZA65_RS04220 at 882.314 kb on + strand at 882.314 kb on + strand at 882.314 kb on + strand at 882.315 kb on - strand at 882.315 kb on - strand at 882.346 kb on - strand at 882.366 kb on + strand at 882.367 kb on - strand, within DZA65_RS04225 at 882.414 kb on - strand, within DZA65_RS04225 at 882.508 kb on + strand, within DZA65_RS04225 at 882.508 kb on + strand, within DZA65_RS04225 at 882.508 kb on + strand, within DZA65_RS04225 at 882.508 kb on + strand, within DZA65_RS04225 at 882.508 kb on + strand, within DZA65_RS04225 at 882.509 kb on - strand, within DZA65_RS04225 at 882.509 kb on - strand, within DZA65_RS04225 at 882.509 kb on - strand, within DZA65_RS04225 at 882.560 kb on + strand, within DZA65_RS04225 at 882.568 kb on + strand, within DZA65_RS04225 at 882.569 kb on - strand, within DZA65_RS04225 at 882.671 kb on + strand at 882.671 kb on + strand at 882.671 kb on + strand at 882.671 kb on + strand at 882.672 kb on - strand at 882.672 kb on - strand at 882.672 kb on - strand at 882.672 kb on - strand at 882.672 kb on - strand at 882.672 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 880,367 + DZA65_RS04205 0.41 -0.4 880,367 + DZA65_RS04205 0.41 -0.9 880,368 - DZA65_RS04205 0.41 +0.3 880,384 + DZA65_RS04205 0.44 -0.3 880,516 + DZA65_RS04205 0.70 -1.3 880,517 - DZA65_RS04205 0.70 -0.7 880,519 - DZA65_RS04205 0.71 -0.1 880,535 - DZA65_RS04205 0.74 -0.7 880,578 + DZA65_RS04205 0.83 +0.3 880,579 - DZA65_RS04205 0.83 +0.8 880,579 - DZA65_RS04205 0.83 +0.4 880,581 + DZA65_RS04205 0.83 -3.3 880,581 + DZA65_RS04205 0.83 -0.8 880,581 + DZA65_RS04205 0.83 +0.6 880,582 - DZA65_RS04205 0.83 +1.0 880,627 + -1.0 880,627 + -1.4 880,628 - -0.7 880,628 - +0.0 880,628 - +0.0 880,628 - +0.0 880,628 - -2.0 880,628 - +0.9 880,638 + -0.7 880,677 + +0.6 880,678 - -2.1 880,678 - -1.1 880,695 + +0.7 880,695 + -1.3 880,696 - -0.7 880,699 + -1.1 880,699 + -0.7 880,699 + -0.2 880,699 + +0.2 880,699 + -0.4 880,699 + -0.4 880,700 - +0.6 880,700 - -1.3 880,700 - -0.7 880,700 - -1.7 880,703 - +1.0 880,725 - +0.2 880,742 + +0.8 880,742 + -0.7 880,743 - +0.0 880,818 + -1.0 880,877 - -0.4 880,885 - -2.2 880,896 + -1.4 880,897 - -0.7 881,219 - -0.1 881,220 + -1.0 881,220 + -0.8 881,221 - -1.1 881,239 + +1.3 881,240 - -0.6 881,244 + -1.7 881,245 - +0.4 881,245 - -0.2 881,245 - +0.3 881,245 - -1.0 881,245 - +0.6 881,410 + DZA65_RS04215 0.33 -1.0 881,410 + DZA65_RS04215 0.33 +0.1 881,411 - DZA65_RS04215 0.33 +0.0 881,471 + DZA65_RS04215 0.45 -0.4 881,572 + DZA65_RS04215 0.66 +1.6 881,572 + DZA65_RS04215 0.66 -1.1 881,573 - DZA65_RS04215 0.66 +1.3 881,573 - DZA65_RS04215 0.66 +0.9 881,666 - DZA65_RS04215 0.86 -1.2 881,666 - DZA65_RS04215 0.86 -0.7 881,666 - DZA65_RS04215 0.86 -0.4 881,714 + -0.7 881,747 + -1.2 881,748 - +0.1 881,748 - -0.2 881,748 - -0.2 881,748 - -1.5 881,749 + +0.6 881,749 + -2.6 881,750 - -0.1 881,750 - -0.1 881,791 - +1.0 881,791 - -1.4 881,854 + -0.5 881,857 + +0.2 881,857 + +0.0 881,857 + -0.7 881,858 - -2.0 881,858 - -1.4 881,858 - -1.7 881,858 - -0.4 881,872 - -0.4 881,890 + -1.2 881,891 - -1.2 881,943 - DZA65_RS04220 0.12 -2.1 881,945 - DZA65_RS04220 0.12 -0.4 881,945 - DZA65_RS04220 0.12 +0.9 881,945 - +0.6 882,089 - DZA65_RS04220 0.46 +1.0 882,109 + DZA65_RS04220 0.50 -1.2 882,167 - DZA65_RS04220 0.63 +0.0 882,190 + DZA65_RS04220 0.69 -1.6 882,190 + DZA65_RS04220 0.69 -0.5 882,190 + DZA65_RS04220 0.69 -1.7 882,190 + DZA65_RS04220 0.69 -1.5 882,191 - DZA65_RS04220 0.69 -1.6 882,191 - DZA65_RS04220 0.69 -1.6 882,191 - DZA65_RS04220 0.69 -0.2 882,277 + DZA65_RS04220 0.89 +0.6 882,277 + DZA65_RS04220 0.89 -0.7 882,314 + -0.4 882,314 + +0.0 882,314 + +0.2 882,315 - +0.6 882,315 - -2.4 882,346 - -0.4 882,366 + -0.4 882,367 - DZA65_RS04225 0.17 -0.3 882,414 - DZA65_RS04225 0.33 -0.2 882,508 + DZA65_RS04225 0.65 -0.1 882,508 + DZA65_RS04225 0.65 -1.9 882,508 + DZA65_RS04225 0.65 -1.2 882,508 + DZA65_RS04225 0.65 +0.0 882,508 + DZA65_RS04225 0.65 -0.9 882,509 - DZA65_RS04225 0.65 -1.6 882,509 - DZA65_RS04225 0.65 -2.0 882,509 - DZA65_RS04225 0.65 -2.3 882,560 + DZA65_RS04225 0.82 -0.9 882,568 + DZA65_RS04225 0.85 -0.3 882,569 - DZA65_RS04225 0.85 +0.0 882,671 + -1.5 882,671 + -0.7 882,671 + -1.4 882,671 + -1.4 882,672 - -1.5 882,672 - +0.0 882,672 - +0.6 882,672 - -0.9 882,672 - -1.9 882,672 - -0.2
Or see this region's nucleotide sequence