Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS04085 and DZA65_RS04090 are separated by 54 nucleotides DZA65_RS04090 and DZA65_RS04095 are separated by 3 nucleotides DZA65_RS04095 and DZA65_RS04100 are separated by 96 nucleotides
DZA65_RS04085: DZA65_RS04085 - phage capsid scaffolding protein, at 863,076 to 863,912
_RS04085
DZA65_RS04090: DZA65_RS04090 - phage major capsid protein, P2 family, at 863,967 to 864,995
_RS04090
DZA65_RS04095: DZA65_RS04095 - terminase, at 864,999 to 865,700
_RS04095
DZA65_RS04100: DZA65_RS04100 - head completion/stabilization protein, at 865,797 to 866,249
_RS04100
Position (kb) 863
864
865 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 863.033 kb on - strand at 863.042 kb on + strand at 863.042 kb on + strand at 863.069 kb on + strand at 863.073 kb on + strand at 863.073 kb on + strand at 863.073 kb on + strand at 863.073 kb on + strand at 863.074 kb on - strand at 863.074 kb on - strand at 863.074 kb on - strand at 863.074 kb on - strand at 863.074 kb on - strand at 863.074 kb on - strand at 863.074 kb on - strand at 863.074 kb on - strand at 863.074 kb on - strand at 863.087 kb on - strand at 863.087 kb on - strand at 863.094 kb on - strand at 863.132 kb on + strand at 863.133 kb on - strand at 863.179 kb on - strand, within DZA65_RS04085 at 863.179 kb on - strand, within DZA65_RS04085 at 863.193 kb on + strand, within DZA65_RS04085 at 863.193 kb on + strand, within DZA65_RS04085 at 863.193 kb on + strand, within DZA65_RS04085 at 863.194 kb on - strand, within DZA65_RS04085 at 863.194 kb on - strand, within DZA65_RS04085 at 863.194 kb on - strand, within DZA65_RS04085 at 863.248 kb on + strand, within DZA65_RS04085 at 863.248 kb on + strand at 863.257 kb on + strand, within DZA65_RS04085 at 863.257 kb on + strand, within DZA65_RS04085 at 863.258 kb on - strand, within DZA65_RS04085 at 863.258 kb on - strand, within DZA65_RS04085 at 863.258 kb on - strand at 863.258 kb on - strand, within DZA65_RS04085 at 863.305 kb on + strand, within DZA65_RS04085 at 863.305 kb on + strand, within DZA65_RS04085 at 863.323 kb on + strand, within DZA65_RS04085 at 863.324 kb on - strand, within DZA65_RS04085 at 863.324 kb on - strand, within DZA65_RS04085 at 863.324 kb on - strand, within DZA65_RS04085 at 863.350 kb on + strand, within DZA65_RS04085 at 863.372 kb on - strand, within DZA65_RS04085 at 863.409 kb on + strand, within DZA65_RS04085 at 863.410 kb on - strand, within DZA65_RS04085 at 863.464 kb on + strand, within DZA65_RS04085 at 863.475 kb on - strand, within DZA65_RS04085 at 863.475 kb on - strand, within DZA65_RS04085 at 863.475 kb on - strand, within DZA65_RS04085 at 863.506 kb on + strand, within DZA65_RS04085 at 863.507 kb on - strand, within DZA65_RS04085 at 863.530 kb on + strand, within DZA65_RS04085 at 863.531 kb on - strand, within DZA65_RS04085 at 863.549 kb on + strand, within DZA65_RS04085 at 863.549 kb on + strand, within DZA65_RS04085 at 863.549 kb on + strand, within DZA65_RS04085 at 863.549 kb on + strand, within DZA65_RS04085 at 863.549 kb on + strand, within DZA65_RS04085 at 863.550 kb on - strand, within DZA65_RS04085 at 863.550 kb on - strand, within DZA65_RS04085 at 863.562 kb on - strand, within DZA65_RS04085 at 863.562 kb on - strand, within DZA65_RS04085 at 863.573 kb on + strand, within DZA65_RS04085 at 863.574 kb on - strand, within DZA65_RS04085 at 863.574 kb on - strand, within DZA65_RS04085 at 863.588 kb on + strand, within DZA65_RS04085 at 863.589 kb on - strand, within DZA65_RS04085 at 863.589 kb on - strand, within DZA65_RS04085 at 863.646 kb on - strand, within DZA65_RS04085 at 863.693 kb on - strand, within DZA65_RS04085 at 863.753 kb on + strand, within DZA65_RS04085 at 863.808 kb on - strand, within DZA65_RS04085 at 863.852 kb on + strand at 863.853 kb on - strand at 863.859 kb on - strand at 863.910 kb on + strand at 863.910 kb on + strand at 863.911 kb on - strand at 863.911 kb on - strand at 863.943 kb on - strand at 863.966 kb on + strand at 863.966 kb on + strand at 863.967 kb on - strand at 863.967 kb on - strand at 863.975 kb on - strand at 863.994 kb on + strand at 864.007 kb on - strand at 864.007 kb on - strand at 864.252 kb on + strand, within DZA65_RS04090 at 864.252 kb on + strand, within DZA65_RS04090 at 864.252 kb on + strand, within DZA65_RS04090 at 864.252 kb on + strand, within DZA65_RS04090 at 864.253 kb on - strand, within DZA65_RS04090 at 864.253 kb on - strand, within DZA65_RS04090 at 864.253 kb on - strand, within DZA65_RS04090 at 864.253 kb on - strand, within DZA65_RS04090 at 864.254 kb on + strand, within DZA65_RS04090 at 864.254 kb on + strand, within DZA65_RS04090 at 864.254 kb on + strand, within DZA65_RS04090 at 864.255 kb on - strand, within DZA65_RS04090 at 864.255 kb on - strand, within DZA65_RS04090 at 864.255 kb on - strand, within DZA65_RS04090 at 864.255 kb on - strand, within DZA65_RS04090 at 864.255 kb on - strand, within DZA65_RS04090 at 864.255 kb on - strand, within DZA65_RS04090 at 864.383 kb on + strand, within DZA65_RS04090 at 864.512 kb on + strand, within DZA65_RS04090 at 864.513 kb on - strand, within DZA65_RS04090 at 864.529 kb on + strand at 864.549 kb on + strand, within DZA65_RS04090 at 864.550 kb on - strand, within DZA65_RS04090 at 864.666 kb on + strand, within DZA65_RS04090 at 864.765 kb on - strand, within DZA65_RS04090 at 864.765 kb on - strand, within DZA65_RS04090 at 864.779 kb on + strand, within DZA65_RS04090 at 864.779 kb on + strand at 864.780 kb on - strand, within DZA65_RS04090 at 864.809 kb on + strand, within DZA65_RS04090 at 864.809 kb on + strand, within DZA65_RS04090 at 864.809 kb on + strand, within DZA65_RS04090 at 864.809 kb on + strand, within DZA65_RS04090 at 864.809 kb on + strand, within DZA65_RS04090 at 864.809 kb on + strand, within DZA65_RS04090 at 864.809 kb on + strand, within DZA65_RS04090 at 864.810 kb on - strand, within DZA65_RS04090 at 864.810 kb on - strand, within DZA65_RS04090 at 864.810 kb on - strand, within DZA65_RS04090 at 864.813 kb on + strand, within DZA65_RS04090 at 864.813 kb on + strand, within DZA65_RS04090 at 864.813 kb on + strand, within DZA65_RS04090 at 864.814 kb on - strand, within DZA65_RS04090 at 864.814 kb on - strand, within DZA65_RS04090 at 864.824 kb on + strand, within DZA65_RS04090 at 864.825 kb on - strand, within DZA65_RS04090 at 864.825 kb on - strand, within DZA65_RS04090 at 864.825 kb on - strand, within DZA65_RS04090 at 864.825 kb on - strand, within DZA65_RS04090 at 864.883 kb on - strand, within DZA65_RS04090 at 864.925 kb on - strand at 864.925 kb on - strand at 864.925 kb on - strand at 864.925 kb on - strand at 865.054 kb on + strand at 865.055 kb on - strand at 865.207 kb on + strand, within DZA65_RS04095 at 865.208 kb on - strand, within DZA65_RS04095 at 865.208 kb on - strand, within DZA65_RS04095 at 865.208 kb on - strand, within DZA65_RS04095 at 865.215 kb on + strand, within DZA65_RS04095 at 865.236 kb on + strand, within DZA65_RS04095 at 865.236 kb on + strand, within DZA65_RS04095 at 865.236 kb on + strand, within DZA65_RS04095 at 865.236 kb on + strand, within DZA65_RS04095 at 865.236 kb on + strand, within DZA65_RS04095 at 865.237 kb on - strand, within DZA65_RS04095 at 865.390 kb on + strand, within DZA65_RS04095 at 865.420 kb on + strand, within DZA65_RS04095 at 865.420 kb on + strand, within DZA65_RS04095 at 865.420 kb on + strand, within DZA65_RS04095 at 865.441 kb on - strand, within DZA65_RS04095 at 865.441 kb on - strand, within DZA65_RS04095 at 865.441 kb on - strand, within DZA65_RS04095 at 865.483 kb on + strand, within DZA65_RS04095 at 865.483 kb on + strand, within DZA65_RS04095 at 865.484 kb on - strand, within DZA65_RS04095 at 865.484 kb on - strand, within DZA65_RS04095 at 865.484 kb on - strand, within DZA65_RS04095 at 865.484 kb on - strand, within DZA65_RS04095 at 865.484 kb on - strand, within DZA65_RS04095 at 865.529 kb on - strand, within DZA65_RS04095 at 865.664 kb on + strand at 865.698 kb on + strand at 865.698 kb on + strand at 865.698 kb on + strand at 865.699 kb on - strand at 865.706 kb on + strand at 865.707 kb on - strand at 865.785 kb on + strand at 865.822 kb on - strand at 865.834 kb on + strand at 865.834 kb on + strand at 865.834 kb on + strand at 865.835 kb on - strand at 865.835 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 863,033 - -0.6 863,042 + -0.4 863,042 + -2.1 863,069 + -0.4 863,073 + -0.8 863,073 + -0.2 863,073 + -0.9 863,073 + +0.1 863,074 - +0.3 863,074 - -1.4 863,074 - -0.1 863,074 - +0.0 863,074 - -0.3 863,074 - +0.6 863,074 - -1.1 863,074 - -0.2 863,074 - -2.1 863,087 - -0.5 863,087 - -0.1 863,094 - -0.5 863,132 + -1.2 863,133 - -2.2 863,179 - DZA65_RS04085 0.12 +0.6 863,179 - DZA65_RS04085 0.12 -1.2 863,193 + DZA65_RS04085 0.14 -0.5 863,193 + DZA65_RS04085 0.14 -1.9 863,193 + DZA65_RS04085 0.14 -1.2 863,194 - DZA65_RS04085 0.14 +1.0 863,194 - DZA65_RS04085 0.14 -0.3 863,194 - DZA65_RS04085 0.14 -0.6 863,248 + DZA65_RS04085 0.21 -1.9 863,248 + +1.6 863,257 + DZA65_RS04085 0.22 +0.4 863,257 + DZA65_RS04085 0.22 -0.5 863,258 - DZA65_RS04085 0.22 +0.8 863,258 - DZA65_RS04085 0.22 +0.9 863,258 - +0.6 863,258 - DZA65_RS04085 0.22 +0.0 863,305 + DZA65_RS04085 0.27 +0.1 863,305 + DZA65_RS04085 0.27 -0.2 863,323 + DZA65_RS04085 0.30 +0.7 863,324 - DZA65_RS04085 0.30 -1.0 863,324 - DZA65_RS04085 0.30 -0.5 863,324 - DZA65_RS04085 0.30 -1.4 863,350 + DZA65_RS04085 0.33 -0.6 863,372 - DZA65_RS04085 0.35 -0.4 863,409 + DZA65_RS04085 0.40 -0.3 863,410 - DZA65_RS04085 0.40 +0.0 863,464 + DZA65_RS04085 0.46 +0.9 863,475 - DZA65_RS04085 0.48 +0.3 863,475 - DZA65_RS04085 0.48 -0.4 863,475 - DZA65_RS04085 0.48 +0.1 863,506 + DZA65_RS04085 0.51 -0.1 863,507 - DZA65_RS04085 0.51 -2.0 863,530 + DZA65_RS04085 0.54 +0.2 863,531 - DZA65_RS04085 0.54 -2.2 863,549 + DZA65_RS04085 0.57 -0.2 863,549 + DZA65_RS04085 0.57 +1.2 863,549 + DZA65_RS04085 0.57 -2.0 863,549 + DZA65_RS04085 0.57 -0.7 863,549 + DZA65_RS04085 0.57 +0.7 863,550 - DZA65_RS04085 0.57 +0.0 863,550 - DZA65_RS04085 0.57 -0.5 863,562 - DZA65_RS04085 0.58 +1.3 863,562 - DZA65_RS04085 0.58 -0.8 863,573 + DZA65_RS04085 0.59 -0.5 863,574 - DZA65_RS04085 0.59 +0.0 863,574 - DZA65_RS04085 0.59 -1.9 863,588 + DZA65_RS04085 0.61 +0.0 863,589 - DZA65_RS04085 0.61 +1.0 863,589 - DZA65_RS04085 0.61 +0.0 863,646 - DZA65_RS04085 0.68 -0.6 863,693 - DZA65_RS04085 0.74 -0.2 863,753 + DZA65_RS04085 0.81 -1.2 863,808 - DZA65_RS04085 0.87 -0.7 863,852 + +0.0 863,853 - -0.4 863,859 - -0.1 863,910 + +0.0 863,910 + -1.4 863,911 - +0.5 863,911 - -0.1 863,943 - -0.3 863,966 + +0.6 863,966 + -1.2 863,967 - -1.4 863,967 - -0.4 863,975 - -0.7 863,994 + +0.4 864,007 - -0.1 864,007 - -0.7 864,252 + DZA65_RS04090 0.28 -0.7 864,252 + DZA65_RS04090 0.28 -0.7 864,252 + DZA65_RS04090 0.28 -1.1 864,252 + DZA65_RS04090 0.28 +0.4 864,253 - DZA65_RS04090 0.28 +0.7 864,253 - DZA65_RS04090 0.28 -2.4 864,253 - DZA65_RS04090 0.28 -0.5 864,253 - DZA65_RS04090 0.28 +0.9 864,254 + DZA65_RS04090 0.28 -2.0 864,254 + DZA65_RS04090 0.28 +0.6 864,254 + DZA65_RS04090 0.28 +0.2 864,255 - DZA65_RS04090 0.28 +0.3 864,255 - DZA65_RS04090 0.28 +0.2 864,255 - DZA65_RS04090 0.28 +2.0 864,255 - DZA65_RS04090 0.28 +0.8 864,255 - DZA65_RS04090 0.28 +0.5 864,255 - DZA65_RS04090 0.28 -0.5 864,383 + DZA65_RS04090 0.40 +0.0 864,512 + DZA65_RS04090 0.53 -0.1 864,513 - DZA65_RS04090 0.53 -1.1 864,529 + +1.6 864,549 + DZA65_RS04090 0.57 +0.6 864,550 - DZA65_RS04090 0.57 +0.2 864,666 + DZA65_RS04090 0.68 +0.9 864,765 - DZA65_RS04090 0.78 -0.7 864,765 - DZA65_RS04090 0.78 +1.0 864,779 + DZA65_RS04090 0.79 -0.6 864,779 + +3.2 864,780 - DZA65_RS04090 0.79 -1.0 864,809 + DZA65_RS04090 0.82 +0.8 864,809 + DZA65_RS04090 0.82 +0.6 864,809 + DZA65_RS04090 0.82 +0.2 864,809 + DZA65_RS04090 0.82 -0.5 864,809 + DZA65_RS04090 0.82 +0.1 864,809 + DZA65_RS04090 0.82 -2.3 864,809 + DZA65_RS04090 0.82 +0.0 864,810 - DZA65_RS04090 0.82 -0.3 864,810 - DZA65_RS04090 0.82 +0.1 864,810 - DZA65_RS04090 0.82 -1.2 864,813 + DZA65_RS04090 0.82 +0.6 864,813 + DZA65_RS04090 0.82 -1.8 864,813 + DZA65_RS04090 0.82 -0.4 864,814 - DZA65_RS04090 0.82 +1.6 864,814 - DZA65_RS04090 0.82 -0.1 864,824 + DZA65_RS04090 0.83 -1.0 864,825 - DZA65_RS04090 0.83 +0.3 864,825 - DZA65_RS04090 0.83 -0.5 864,825 - DZA65_RS04090 0.83 +2.6 864,825 - DZA65_RS04090 0.83 -0.2 864,883 - DZA65_RS04090 0.89 +0.3 864,925 - +0.3 864,925 - +1.2 864,925 - -0.6 864,925 - -1.5 865,054 + -0.7 865,055 - +0.4 865,207 + DZA65_RS04095 0.30 -0.4 865,208 - DZA65_RS04095 0.30 +0.0 865,208 - DZA65_RS04095 0.30 +0.4 865,208 - DZA65_RS04095 0.30 -1.4 865,215 + DZA65_RS04095 0.31 -0.7 865,236 + DZA65_RS04095 0.34 +0.3 865,236 + DZA65_RS04095 0.34 +1.2 865,236 + DZA65_RS04095 0.34 +0.6 865,236 + DZA65_RS04095 0.34 -0.9 865,236 + DZA65_RS04095 0.34 -0.4 865,237 - DZA65_RS04095 0.34 -1.2 865,390 + DZA65_RS04095 0.56 -1.8 865,420 + DZA65_RS04095 0.60 -0.4 865,420 + DZA65_RS04095 0.60 -3.6 865,420 + DZA65_RS04095 0.60 -0.7 865,441 - DZA65_RS04095 0.63 -0.2 865,441 - DZA65_RS04095 0.63 -1.0 865,441 - DZA65_RS04095 0.63 -1.5 865,483 + DZA65_RS04095 0.69 -0.3 865,483 + DZA65_RS04095 0.69 -1.0 865,484 - DZA65_RS04095 0.69 -1.3 865,484 - DZA65_RS04095 0.69 +0.8 865,484 - DZA65_RS04095 0.69 -0.0 865,484 - DZA65_RS04095 0.69 -0.7 865,484 - DZA65_RS04095 0.69 -1.0 865,529 - DZA65_RS04095 0.75 -0.3 865,664 + +0.9 865,698 + +0.3 865,698 + -0.2 865,698 + -1.7 865,699 - +1.3 865,706 + -1.4 865,707 - -1.0 865,785 + -2.7 865,822 - -0.1 865,834 + -1.4 865,834 + +0.3 865,834 + -0.6 865,835 - -1.2 865,835 - -1.2
Or see this region's nucleotide sequence