Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS03985 and DZA65_RS03995 are separated by 441 nucleotides DZA65_RS03995 and DZA65_RS04000 are separated by 34 nucleotides
DZA65_RS03985: DZA65_RS03985 - phage capsid size determination protein, at 844,335 to 845,081
_RS03985
DZA65_RS03995: DZA65_RS03995 - AAA family ATPase, at 845,523 to 847,271
_RS03995
DZA65_RS04000: DZA65_RS04000 - tyrosine-type recombinase/integrase, at 847,306 to 848,493
_RS04000
Position (kb) 845
846
847
848 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 844.597 kb on + strand, within DZA65_RS03985 at 844.598 kb on - strand, within DZA65_RS03985 at 844.598 kb on - strand at 844.632 kb on + strand, within DZA65_RS03985 at 844.632 kb on + strand, within DZA65_RS03985 at 844.632 kb on + strand, within DZA65_RS03985 at 844.632 kb on + strand, within DZA65_RS03985 at 844.633 kb on - strand, within DZA65_RS03985 at 844.633 kb on - strand, within DZA65_RS03985 at 844.712 kb on + strand, within DZA65_RS03985 at 844.712 kb on + strand, within DZA65_RS03985 at 844.712 kb on + strand, within DZA65_RS03985 at 844.712 kb on + strand, within DZA65_RS03985 at 844.713 kb on - strand, within DZA65_RS03985 at 844.713 kb on - strand, within DZA65_RS03985 at 844.713 kb on - strand, within DZA65_RS03985 at 844.756 kb on + strand, within DZA65_RS03985 at 844.756 kb on + strand, within DZA65_RS03985 at 844.756 kb on + strand, within DZA65_RS03985 at 844.776 kb on - strand, within DZA65_RS03985 at 844.781 kb on + strand, within DZA65_RS03985 at 844.781 kb on + strand, within DZA65_RS03985 at 844.807 kb on + strand, within DZA65_RS03985 at 844.807 kb on + strand, within DZA65_RS03985 at 844.844 kb on + strand, within DZA65_RS03985 at 844.922 kb on + strand, within DZA65_RS03985 at 844.923 kb on - strand, within DZA65_RS03985 at 845.091 kb on + strand at 845.091 kb on + strand at 845.092 kb on - strand at 845.092 kb on - strand at 845.092 kb on - strand at 845.092 kb on - strand at 845.092 kb on - strand at 845.092 kb on - strand at 845.092 kb on - strand at 845.092 kb on - strand at 845.092 kb on - strand at 845.092 kb on - strand at 845.092 kb on - strand at 845.092 kb on - strand at 845.092 kb on - strand at 845.093 kb on + strand at 845.093 kb on + strand at 845.093 kb on + strand at 845.093 kb on + strand at 845.093 kb on + strand at 845.094 kb on - strand at 845.094 kb on - strand at 845.094 kb on - strand at 845.094 kb on - strand at 845.094 kb on - strand at 845.121 kb on + strand at 845.121 kb on + strand at 845.121 kb on + strand at 845.122 kb on - strand at 845.133 kb on - strand at 845.133 kb on - strand at 845.194 kb on + strand at 845.194 kb on + strand at 845.194 kb on + strand at 845.195 kb on - strand at 845.198 kb on + strand at 845.198 kb on + strand at 845.198 kb on + strand at 845.198 kb on + strand at 845.199 kb on - strand at 845.199 kb on - strand at 845.199 kb on - strand at 845.199 kb on - strand at 845.251 kb on + strand at 845.251 kb on + strand at 845.252 kb on - strand at 845.252 kb on - strand at 845.252 kb on - strand at 845.252 kb on - strand at 845.252 kb on - strand at 845.278 kb on - strand at 845.290 kb on + strand at 845.296 kb on + strand at 845.296 kb on + strand at 845.306 kb on + strand at 845.338 kb on - strand at 845.351 kb on + strand at 845.352 kb on - strand at 845.353 kb on + strand at 845.362 kb on + strand at 845.362 kb on + strand at 845.363 kb on - strand at 845.378 kb on + strand at 845.378 kb on + strand at 845.378 kb on + strand at 845.378 kb on + strand at 845.379 kb on - strand at 845.387 kb on + strand at 845.387 kb on + strand at 845.388 kb on - strand at 845.418 kb on + strand at 845.419 kb on - strand at 845.419 kb on - strand at 845.479 kb on + strand at 845.479 kb on + strand at 845.479 kb on + strand at 845.482 kb on - strand at 845.531 kb on - strand at 845.562 kb on - strand at 845.633 kb on + strand at 845.679 kb on - strand at 845.896 kb on - strand, within DZA65_RS03995 at 845.909 kb on + strand, within DZA65_RS03995 at 845.910 kb on - strand, within DZA65_RS03995 at 846.110 kb on - strand, within DZA65_RS03995 at 846.308 kb on + strand, within DZA65_RS03995 at 846.321 kb on + strand, within DZA65_RS03995 at 846.322 kb on - strand, within DZA65_RS03995 at 846.345 kb on + strand, within DZA65_RS03995 at 846.347 kb on + strand, within DZA65_RS03995 at 846.347 kb on + strand, within DZA65_RS03995 at 846.347 kb on + strand, within DZA65_RS03995 at 846.347 kb on + strand, within DZA65_RS03995 at 846.347 kb on + strand, within DZA65_RS03995 at 846.347 kb on + strand, within DZA65_RS03995 at 846.347 kb on + strand, within DZA65_RS03995 at 846.348 kb on - strand, within DZA65_RS03995 at 846.348 kb on - strand, within DZA65_RS03995 at 846.383 kb on - strand, within DZA65_RS03995 at 846.409 kb on + strand, within DZA65_RS03995 at 846.409 kb on + strand, within DZA65_RS03995 at 846.410 kb on - strand, within DZA65_RS03995 at 846.489 kb on - strand, within DZA65_RS03995 at 846.519 kb on + strand, within DZA65_RS03995 at 846.584 kb on - strand, within DZA65_RS03995 at 846.633 kb on - strand, within DZA65_RS03995 at 846.689 kb on - strand, within DZA65_RS03995 at 846.721 kb on - strand, within DZA65_RS03995 at 846.747 kb on - strand, within DZA65_RS03995 at 846.806 kb on - strand, within DZA65_RS03995 at 846.809 kb on - strand, within DZA65_RS03995 at 847.084 kb on + strand, within DZA65_RS03995 at 847.290 kb on + strand at 847.292 kb on + strand at 847.308 kb on - strand at 847.311 kb on + strand at 847.312 kb on - strand at 847.312 kb on - strand at 847.322 kb on - strand at 847.322 kb on - strand at 847.322 kb on - strand at 847.361 kb on + strand at 847.362 kb on - strand at 847.365 kb on + strand at 847.375 kb on - strand at 847.376 kb on + strand at 847.376 kb on + strand at 847.377 kb on - strand at 847.377 kb on - strand at 847.377 kb on - strand at 847.377 kb on - strand at 847.377 kb on - strand at 847.437 kb on + strand, within DZA65_RS04000 at 847.438 kb on - strand, within DZA65_RS04000 at 847.468 kb on + strand, within DZA65_RS04000 at 847.478 kb on - strand, within DZA65_RS04000 at 847.519 kb on + strand, within DZA65_RS04000 at 847.558 kb on - strand, within DZA65_RS04000 at 847.558 kb on - strand, within DZA65_RS04000 at 847.567 kb on - strand, within DZA65_RS04000 at 847.583 kb on + strand, within DZA65_RS04000 at 847.583 kb on + strand, within DZA65_RS04000 at 847.583 kb on + strand, within DZA65_RS04000 at 847.584 kb on - strand, within DZA65_RS04000 at 847.584 kb on - strand, within DZA65_RS04000 at 847.653 kb on + strand, within DZA65_RS04000 at 847.653 kb on + strand, within DZA65_RS04000 at 847.653 kb on + strand, within DZA65_RS04000 at 847.653 kb on + strand, within DZA65_RS04000 at 847.653 kb on + strand, within DZA65_RS04000 at 847.654 kb on - strand, within DZA65_RS04000 at 847.654 kb on - strand, within DZA65_RS04000 at 847.654 kb on - strand, within DZA65_RS04000 at 847.654 kb on - strand, within DZA65_RS04000 at 847.654 kb on - strand, within DZA65_RS04000 at 847.654 kb on - strand, within DZA65_RS04000 at 847.654 kb on - strand, within DZA65_RS04000 at 847.654 kb on - strand, within DZA65_RS04000 at 847.756 kb on - strand, within DZA65_RS04000 at 847.765 kb on + strand, within DZA65_RS04000 at 847.765 kb on + strand, within DZA65_RS04000 at 847.765 kb on + strand, within DZA65_RS04000 at 847.765 kb on + strand, within DZA65_RS04000 at 847.765 kb on + strand, within DZA65_RS04000 at 847.765 kb on + strand, within DZA65_RS04000 at 847.766 kb on - strand, within DZA65_RS04000 at 847.766 kb on - strand, within DZA65_RS04000 at 847.766 kb on - strand, within DZA65_RS04000 at 847.766 kb on - strand, within DZA65_RS04000 at 847.766 kb on - strand, within DZA65_RS04000 at 847.766 kb on - strand, within DZA65_RS04000 at 847.766 kb on - strand, within DZA65_RS04000 at 847.766 kb on - strand, within DZA65_RS04000 at 847.806 kb on + strand, within DZA65_RS04000 at 847.806 kb on + strand, within DZA65_RS04000 at 847.806 kb on + strand, within DZA65_RS04000 at 847.807 kb on - strand, within DZA65_RS04000 at 847.807 kb on - strand, within DZA65_RS04000 at 847.807 kb on - strand, within DZA65_RS04000 at 847.807 kb on - strand, within DZA65_RS04000 at 847.837 kb on + strand, within DZA65_RS04000 at 847.838 kb on - strand, within DZA65_RS04000 at 847.863 kb on + strand, within DZA65_RS04000 at 847.863 kb on + strand, within DZA65_RS04000 at 847.863 kb on + strand, within DZA65_RS04000 at 847.863 kb on + strand, within DZA65_RS04000 at 847.863 kb on + strand, within DZA65_RS04000 at 847.863 kb on + strand, within DZA65_RS04000 at 847.864 kb on - strand, within DZA65_RS04000 at 847.864 kb on - strand, within DZA65_RS04000 at 847.893 kb on + strand, within DZA65_RS04000 at 847.899 kb on + strand, within DZA65_RS04000 at 847.900 kb on - strand, within DZA65_RS04000 at 847.900 kb on - strand, within DZA65_RS04000 at 847.943 kb on + strand, within DZA65_RS04000 at 847.969 kb on + strand, within DZA65_RS04000 at 847.969 kb on + strand, within DZA65_RS04000 at 847.969 kb on + strand, within DZA65_RS04000 at 847.969 kb on + strand, within DZA65_RS04000 at 847.970 kb on - strand, within DZA65_RS04000 at 847.970 kb on - strand, within DZA65_RS04000 at 847.970 kb on - strand at 848.026 kb on + strand, within DZA65_RS04000 at 848.027 kb on - strand, within DZA65_RS04000 at 848.027 kb on - strand, within DZA65_RS04000 at 848.027 kb on - strand, within DZA65_RS04000 at 848.027 kb on - strand, within DZA65_RS04000 at 848.027 kb on - strand, within DZA65_RS04000 at 848.133 kb on + strand, within DZA65_RS04000 at 848.133 kb on + strand, within DZA65_RS04000 at 848.157 kb on + strand, within DZA65_RS04000 at 848.158 kb on - strand, within DZA65_RS04000 at 848.185 kb on + strand, within DZA65_RS04000 at 848.236 kb on + strand, within DZA65_RS04000 at 848.236 kb on + strand, within DZA65_RS04000 at 848.237 kb on - strand, within DZA65_RS04000 at 848.237 kb on - strand, within DZA65_RS04000 at 848.237 kb on - strand at 848.237 kb on - strand, within DZA65_RS04000
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 844,597 + DZA65_RS03985 0.35 -0.5 844,598 - DZA65_RS03985 0.35 -0.7 844,598 - -0.4 844,632 + DZA65_RS03985 0.40 +0.4 844,632 + DZA65_RS03985 0.40 -0.6 844,632 + DZA65_RS03985 0.40 +0.9 844,632 + DZA65_RS03985 0.40 -1.5 844,633 - DZA65_RS03985 0.40 -1.7 844,633 - DZA65_RS03985 0.40 +0.3 844,712 + DZA65_RS03985 0.50 -0.4 844,712 + DZA65_RS03985 0.50 +0.2 844,712 + DZA65_RS03985 0.50 -0.4 844,712 + DZA65_RS03985 0.50 -1.1 844,713 - DZA65_RS03985 0.51 +0.3 844,713 - DZA65_RS03985 0.51 -0.4 844,713 - DZA65_RS03985 0.51 -0.4 844,756 + DZA65_RS03985 0.56 -0.9 844,756 + DZA65_RS03985 0.56 +0.3 844,756 + DZA65_RS03985 0.56 -1.0 844,776 - DZA65_RS03985 0.59 +2.0 844,781 + DZA65_RS03985 0.60 +0.0 844,781 + DZA65_RS03985 0.60 +0.0 844,807 + DZA65_RS03985 0.63 +1.0 844,807 + DZA65_RS03985 0.63 +0.6 844,844 + DZA65_RS03985 0.68 -0.3 844,922 + DZA65_RS03985 0.79 -0.7 844,923 - DZA65_RS03985 0.79 -0.4 845,091 + -1.0 845,091 + +0.4 845,092 - -0.4 845,092 - -0.2 845,092 - -1.2 845,092 - -1.4 845,092 - +2.2 845,092 - -0.4 845,092 - -0.6 845,092 - -1.2 845,092 - -0.2 845,092 - -0.2 845,092 - +0.1 845,092 - +1.3 845,092 - -2.6 845,093 + +1.9 845,093 + -0.4 845,093 + -1.2 845,093 + +0.7 845,093 + -1.1 845,094 - -0.9 845,094 - -1.1 845,094 - +1.0 845,094 - -1.2 845,094 - -0.4 845,121 + -2.7 845,121 + -0.6 845,121 + -1.4 845,122 - -0.4 845,133 - +0.0 845,133 - -1.0 845,194 + -0.2 845,194 + +1.2 845,194 + -0.2 845,195 - +1.3 845,198 + -1.0 845,198 + -0.4 845,198 + +0.3 845,198 + +0.6 845,199 - +0.5 845,199 - -0.1 845,199 - -1.2 845,199 - -1.4 845,251 + +0.2 845,251 + -1.9 845,252 - -0.4 845,252 - -0.1 845,252 - -0.7 845,252 - -0.6 845,252 - -1.2 845,278 - -1.2 845,290 + -0.7 845,296 + +1.6 845,296 + -0.2 845,306 + -0.9 845,338 - -0.1 845,351 + -0.7 845,352 - -0.6 845,353 + -1.4 845,362 + -0.8 845,362 + +1.0 845,363 - -1.0 845,378 + -0.5 845,378 + -2.0 845,378 + -0.9 845,378 + +0.0 845,379 - +1.0 845,387 + +0.1 845,387 + -0.6 845,388 - +0.3 845,418 + -1.6 845,419 - +2.0 845,419 - -0.9 845,479 + -1.6 845,479 + -0.7 845,479 + -0.4 845,482 - -0.7 845,531 - -0.4 845,562 - +0.0 845,633 + +1.6 845,679 - -1.4 845,896 - DZA65_RS03995 0.21 -1.0 845,909 + DZA65_RS03995 0.22 -0.3 845,910 - DZA65_RS03995 0.22 -1.5 846,110 - DZA65_RS03995 0.34 +0.4 846,308 + DZA65_RS03995 0.45 +1.2 846,321 + DZA65_RS03995 0.46 +0.4 846,322 - DZA65_RS03995 0.46 -2.0 846,345 + DZA65_RS03995 0.47 +1.1 846,347 + DZA65_RS03995 0.47 -1.0 846,347 + DZA65_RS03995 0.47 -0.7 846,347 + DZA65_RS03995 0.47 -0.5 846,347 + DZA65_RS03995 0.47 +0.5 846,347 + DZA65_RS03995 0.47 +0.2 846,347 + DZA65_RS03995 0.47 -0.4 846,347 + DZA65_RS03995 0.47 +0.3 846,348 - DZA65_RS03995 0.47 -2.5 846,348 - DZA65_RS03995 0.47 +0.3 846,383 - DZA65_RS03995 0.49 +0.1 846,409 + DZA65_RS03995 0.51 -0.1 846,409 + DZA65_RS03995 0.51 +0.6 846,410 - DZA65_RS03995 0.51 +0.6 846,489 - DZA65_RS03995 0.55 -2.6 846,519 + DZA65_RS03995 0.57 +0.2 846,584 - DZA65_RS03995 0.61 -0.1 846,633 - DZA65_RS03995 0.63 -0.2 846,689 - DZA65_RS03995 0.67 +0.3 846,721 - DZA65_RS03995 0.68 +0.0 846,747 - DZA65_RS03995 0.70 -0.3 846,806 - DZA65_RS03995 0.73 -0.1 846,809 - DZA65_RS03995 0.74 -0.6 847,084 + DZA65_RS03995 0.89 +0.5 847,290 + +0.0 847,292 + -1.9 847,308 - -2.1 847,311 + +0.5 847,312 - +0.2 847,312 - +1.3 847,322 - -1.0 847,322 - -0.2 847,322 - -0.4 847,361 + -0.4 847,362 - -0.3 847,365 + -0.2 847,375 - -0.7 847,376 + +0.6 847,376 + -0.4 847,377 - -0.2 847,377 - +0.0 847,377 - -1.2 847,377 - -0.1 847,377 - -1.0 847,437 + DZA65_RS04000 0.11 -1.0 847,438 - DZA65_RS04000 0.11 +0.4 847,468 + DZA65_RS04000 0.14 -0.4 847,478 - DZA65_RS04000 0.14 +0.3 847,519 + DZA65_RS04000 0.18 -0.5 847,558 - DZA65_RS04000 0.21 -0.3 847,558 - DZA65_RS04000 0.21 -0.4 847,567 - DZA65_RS04000 0.22 +0.3 847,583 + DZA65_RS04000 0.23 -1.1 847,583 + DZA65_RS04000 0.23 -0.9 847,583 + DZA65_RS04000 0.23 -0.7 847,584 - DZA65_RS04000 0.23 -0.9 847,584 - DZA65_RS04000 0.23 -0.4 847,653 + DZA65_RS04000 0.29 -1.9 847,653 + DZA65_RS04000 0.29 -1.0 847,653 + DZA65_RS04000 0.29 -0.2 847,653 + DZA65_RS04000 0.29 +1.2 847,653 + DZA65_RS04000 0.29 -0.1 847,654 - DZA65_RS04000 0.29 +0.3 847,654 - DZA65_RS04000 0.29 +1.2 847,654 - DZA65_RS04000 0.29 +0.6 847,654 - DZA65_RS04000 0.29 -1.0 847,654 - DZA65_RS04000 0.29 -2.4 847,654 - DZA65_RS04000 0.29 -0.1 847,654 - DZA65_RS04000 0.29 +0.6 847,654 - DZA65_RS04000 0.29 -0.3 847,756 - DZA65_RS04000 0.38 -0.6 847,765 + DZA65_RS04000 0.39 -0.2 847,765 + DZA65_RS04000 0.39 -1.6 847,765 + DZA65_RS04000 0.39 -0.8 847,765 + DZA65_RS04000 0.39 +0.3 847,765 + DZA65_RS04000 0.39 -0.5 847,765 + DZA65_RS04000 0.39 -0.3 847,766 - DZA65_RS04000 0.39 -0.6 847,766 - DZA65_RS04000 0.39 -1.0 847,766 - DZA65_RS04000 0.39 -0.2 847,766 - DZA65_RS04000 0.39 -0.6 847,766 - DZA65_RS04000 0.39 -0.7 847,766 - DZA65_RS04000 0.39 -0.1 847,766 - DZA65_RS04000 0.39 -0.4 847,766 - DZA65_RS04000 0.39 -1.4 847,806 + DZA65_RS04000 0.42 +0.0 847,806 + DZA65_RS04000 0.42 -0.1 847,806 + DZA65_RS04000 0.42 -0.3 847,807 - DZA65_RS04000 0.42 +0.0 847,807 - DZA65_RS04000 0.42 -1.8 847,807 - DZA65_RS04000 0.42 +0.5 847,807 - DZA65_RS04000 0.42 -0.4 847,837 + DZA65_RS04000 0.45 +0.6 847,838 - DZA65_RS04000 0.45 +0.1 847,863 + DZA65_RS04000 0.47 -0.4 847,863 + DZA65_RS04000 0.47 -1.0 847,863 + DZA65_RS04000 0.47 +0.1 847,863 + DZA65_RS04000 0.47 -2.9 847,863 + DZA65_RS04000 0.47 -1.6 847,863 + DZA65_RS04000 0.47 -1.8 847,864 - DZA65_RS04000 0.47 -1.0 847,864 - DZA65_RS04000 0.47 -0.4 847,893 + DZA65_RS04000 0.49 -0.3 847,899 + DZA65_RS04000 0.50 -0.2 847,900 - DZA65_RS04000 0.50 +0.4 847,900 - DZA65_RS04000 0.50 -2.0 847,943 + DZA65_RS04000 0.54 -0.4 847,969 + DZA65_RS04000 0.56 -0.4 847,969 + DZA65_RS04000 0.56 -0.2 847,969 + DZA65_RS04000 0.56 -1.6 847,969 + DZA65_RS04000 0.56 +0.1 847,970 - DZA65_RS04000 0.56 -1.1 847,970 - DZA65_RS04000 0.56 -1.7 847,970 - +1.6 848,026 + DZA65_RS04000 0.61 -1.0 848,027 - DZA65_RS04000 0.61 +0.3 848,027 - DZA65_RS04000 0.61 +1.1 848,027 - DZA65_RS04000 0.61 -0.7 848,027 - DZA65_RS04000 0.61 -0.1 848,027 - DZA65_RS04000 0.61 -0.3 848,133 + DZA65_RS04000 0.70 -1.8 848,133 + DZA65_RS04000 0.70 -1.4 848,157 + DZA65_RS04000 0.72 -0.4 848,158 - DZA65_RS04000 0.72 +0.6 848,185 + DZA65_RS04000 0.74 -0.6 848,236 + DZA65_RS04000 0.78 +1.2 848,236 + DZA65_RS04000 0.78 -0.4 848,237 - DZA65_RS04000 0.78 -0.1 848,237 - DZA65_RS04000 0.78 +1.3 848,237 - +0.6 848,237 - DZA65_RS04000 0.78 -1.4
Or see this region's nucleotide sequence