Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS03940 and DZA65_RS03945 are separated by 301 nucleotides DZA65_RS03945 and DZA65_RS03950 overlap by 17 nucleotides DZA65_RS03950 and DZA65_RS03955 are separated by 238 nucleotides
DZA65_RS03940: DZA65_RS03940 - integrase arm-type DNA-binding domain-containing protein, at 836,737 to 837,482
_RS03940
DZA65_RS03945: DZA65_RS03945 - hypothetical protein, at 837,784 to 838,329
_RS03945
DZA65_RS03950: DZA65_RS03950 - nucleotidyl transferase AbiEii/AbiGii toxin family protein, at 838,313 to 839,230
_RS03950
DZA65_RS03955: DZA65_RS03955 - hypothetical protein, at 839,469 to 840,062
_RS03955
Position (kb) 838
839
840 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 837.317 kb on + strand, within DZA65_RS03940 at 837.318 kb on - strand, within DZA65_RS03940 at 837.318 kb on - strand, within DZA65_RS03940 at 837.321 kb on + strand, within DZA65_RS03940 at 837.321 kb on + strand, within DZA65_RS03940 at 837.322 kb on - strand, within DZA65_RS03940 at 837.335 kb on - strand, within DZA65_RS03940 at 837.343 kb on + strand, within DZA65_RS03940 at 837.343 kb on + strand, within DZA65_RS03940 at 837.343 kb on + strand, within DZA65_RS03940 at 837.363 kb on + strand, within DZA65_RS03940 at 837.363 kb on + strand, within DZA65_RS03940 at 837.363 kb on + strand, within DZA65_RS03940 at 837.364 kb on - strand, within DZA65_RS03940 at 837.364 kb on - strand, within DZA65_RS03940 at 837.364 kb on - strand, within DZA65_RS03940 at 837.364 kb on - strand, within DZA65_RS03940 at 837.364 kb on - strand, within DZA65_RS03940 at 837.384 kb on + strand, within DZA65_RS03940 at 837.385 kb on - strand, within DZA65_RS03940 at 837.385 kb on - strand, within DZA65_RS03940 at 837.438 kb on - strand at 837.458 kb on + strand at 837.459 kb on - strand at 837.459 kb on - strand at 837.468 kb on - strand at 837.486 kb on - strand at 837.525 kb on + strand at 837.528 kb on + strand at 837.529 kb on - strand at 837.540 kb on + strand at 837.541 kb on - strand at 837.541 kb on - strand at 837.541 kb on - strand at 837.543 kb on - strand at 837.544 kb on + strand at 837.570 kb on - strand at 837.575 kb on + strand at 837.575 kb on + strand at 837.575 kb on + strand at 837.576 kb on - strand at 837.581 kb on + strand at 837.581 kb on + strand at 837.581 kb on + strand at 837.582 kb on - strand at 837.582 kb on - strand at 837.582 kb on - strand at 837.583 kb on + strand at 837.583 kb on + strand at 837.612 kb on + strand at 837.613 kb on - strand at 837.613 kb on - strand at 837.613 kb on - strand at 837.613 kb on - strand at 837.613 kb on - strand at 837.654 kb on + strand at 837.654 kb on + strand at 837.655 kb on - strand at 837.655 kb on - strand at 837.677 kb on + strand at 837.713 kb on + strand at 837.758 kb on + strand at 837.779 kb on + strand at 838.307 kb on + strand at 838.307 kb on + strand at 838.307 kb on + strand at 838.307 kb on + strand at 838.307 kb on + strand at 838.308 kb on - strand at 838.308 kb on - strand at 838.309 kb on + strand at 838.309 kb on + strand at 838.309 kb on + strand at 838.310 kb on - strand at 838.327 kb on + strand at 838.412 kb on + strand, within DZA65_RS03950 at 838.412 kb on + strand, within DZA65_RS03950 at 838.412 kb on + strand, within DZA65_RS03950 at 838.412 kb on + strand, within DZA65_RS03950 at 838.413 kb on - strand, within DZA65_RS03950 at 838.413 kb on - strand, within DZA65_RS03950 at 838.413 kb on - strand, within DZA65_RS03950 at 838.425 kb on - strand, within DZA65_RS03950 at 838.425 kb on - strand, within DZA65_RS03950 at 838.425 kb on - strand, within DZA65_RS03950 at 838.459 kb on + strand, within DZA65_RS03950 at 838.460 kb on - strand, within DZA65_RS03950 at 838.460 kb on - strand, within DZA65_RS03950 at 838.460 kb on - strand, within DZA65_RS03950 at 838.460 kb on - strand, within DZA65_RS03950 at 838.579 kb on + strand, within DZA65_RS03950 at 838.579 kb on + strand, within DZA65_RS03950 at 838.580 kb on - strand, within DZA65_RS03950 at 838.589 kb on + strand, within DZA65_RS03950 at 838.589 kb on + strand, within DZA65_RS03950 at 838.589 kb on + strand, within DZA65_RS03950 at 838.590 kb on - strand, within DZA65_RS03950 at 838.659 kb on - strand, within DZA65_RS03950 at 838.659 kb on - strand, within DZA65_RS03950 at 838.668 kb on + strand, within DZA65_RS03950 at 838.668 kb on + strand, within DZA65_RS03950 at 838.668 kb on + strand, within DZA65_RS03950 at 838.668 kb on + strand, within DZA65_RS03950 at 838.668 kb on + strand, within DZA65_RS03950 at 838.668 kb on + strand, within DZA65_RS03950 at 838.668 kb on + strand, within DZA65_RS03950 at 838.669 kb on - strand, within DZA65_RS03950 at 838.669 kb on - strand, within DZA65_RS03950 at 838.669 kb on - strand, within DZA65_RS03950 at 838.669 kb on - strand, within DZA65_RS03950 at 838.669 kb on - strand, within DZA65_RS03950 at 838.669 kb on - strand, within DZA65_RS03950 at 838.669 kb on - strand, within DZA65_RS03950 at 838.669 kb on - strand, within DZA65_RS03950 at 838.669 kb on - strand, within DZA65_RS03950 at 838.669 kb on - strand, within DZA65_RS03950 at 838.669 kb on - strand, within DZA65_RS03950 at 838.669 kb on - strand, within DZA65_RS03950 at 838.669 kb on - strand, within DZA65_RS03950 at 838.669 kb on - strand, within DZA65_RS03950 at 838.689 kb on + strand, within DZA65_RS03950 at 838.690 kb on - strand, within DZA65_RS03950 at 838.721 kb on - strand, within DZA65_RS03950 at 838.766 kb on + strand, within DZA65_RS03950 at 838.766 kb on + strand, within DZA65_RS03950 at 838.767 kb on - strand, within DZA65_RS03950 at 838.767 kb on - strand, within DZA65_RS03950 at 838.767 kb on - strand, within DZA65_RS03950 at 838.768 kb on + strand, within DZA65_RS03950 at 838.768 kb on + strand, within DZA65_RS03950 at 838.768 kb on + strand, within DZA65_RS03950 at 838.768 kb on + strand, within DZA65_RS03950 at 838.769 kb on - strand, within DZA65_RS03950 at 838.769 kb on - strand, within DZA65_RS03950 at 838.769 kb on - strand, within DZA65_RS03950 at 838.769 kb on - strand, within DZA65_RS03950 at 838.789 kb on - strand, within DZA65_RS03950 at 838.795 kb on + strand, within DZA65_RS03950 at 838.795 kb on + strand, within DZA65_RS03950 at 838.796 kb on - strand, within DZA65_RS03950 at 838.796 kb on - strand, within DZA65_RS03950 at 838.799 kb on + strand, within DZA65_RS03950 at 838.799 kb on + strand, within DZA65_RS03950 at 838.799 kb on + strand, within DZA65_RS03950 at 838.799 kb on + strand, within DZA65_RS03950 at 838.799 kb on + strand, within DZA65_RS03950 at 838.799 kb on + strand, within DZA65_RS03950 at 838.799 kb on + strand, within DZA65_RS03950 at 838.799 kb on + strand, within DZA65_RS03950 at 838.799 kb on + strand at 838.800 kb on - strand, within DZA65_RS03950 at 838.800 kb on - strand, within DZA65_RS03950 at 838.800 kb on - strand, within DZA65_RS03950 at 838.800 kb on - strand, within DZA65_RS03950 at 838.800 kb on - strand, within DZA65_RS03950 at 838.800 kb on - strand, within DZA65_RS03950 at 838.809 kb on + strand, within DZA65_RS03950 at 838.820 kb on + strand, within DZA65_RS03950 at 838.829 kb on - strand, within DZA65_RS03950 at 838.829 kb on - strand, within DZA65_RS03950 at 838.837 kb on + strand, within DZA65_RS03950 at 838.837 kb on + strand, within DZA65_RS03950 at 838.837 kb on + strand, within DZA65_RS03950 at 838.838 kb on - strand at 838.838 kb on - strand, within DZA65_RS03950 at 838.901 kb on + strand, within DZA65_RS03950 at 838.901 kb on + strand, within DZA65_RS03950 at 838.901 kb on + strand, within DZA65_RS03950 at 838.901 kb on + strand, within DZA65_RS03950 at 838.902 kb on - strand, within DZA65_RS03950 at 838.902 kb on - strand, within DZA65_RS03950 at 838.902 kb on - strand, within DZA65_RS03950 at 838.902 kb on - strand, within DZA65_RS03950 at 838.902 kb on - strand, within DZA65_RS03950 at 838.929 kb on + strand, within DZA65_RS03950 at 838.929 kb on + strand, within DZA65_RS03950 at 838.929 kb on + strand, within DZA65_RS03950 at 838.930 kb on - strand, within DZA65_RS03950 at 838.930 kb on - strand, within DZA65_RS03950 at 838.958 kb on + strand, within DZA65_RS03950 at 838.958 kb on + strand, within DZA65_RS03950 at 838.958 kb on + strand, within DZA65_RS03950 at 838.958 kb on + strand, within DZA65_RS03950 at 838.958 kb on + strand, within DZA65_RS03950 at 838.958 kb on + strand, within DZA65_RS03950 at 838.959 kb on - strand, within DZA65_RS03950 at 838.959 kb on - strand, within DZA65_RS03950 at 838.959 kb on - strand, within DZA65_RS03950 at 838.959 kb on - strand, within DZA65_RS03950 at 839.009 kb on + strand, within DZA65_RS03950 at 839.009 kb on + strand, within DZA65_RS03950 at 839.009 kb on + strand at 839.009 kb on + strand, within DZA65_RS03950 at 839.009 kb on + strand, within DZA65_RS03950 at 839.010 kb on - strand, within DZA65_RS03950 at 839.010 kb on - strand, within DZA65_RS03950 at 839.019 kb on + strand, within DZA65_RS03950 at 839.019 kb on + strand, within DZA65_RS03950 at 839.020 kb on - strand, within DZA65_RS03950 at 839.020 kb on - strand, within DZA65_RS03950 at 839.020 kb on - strand, within DZA65_RS03950 at 839.034 kb on + strand, within DZA65_RS03950 at 839.072 kb on - strand, within DZA65_RS03950 at 839.137 kb on + strand, within DZA65_RS03950 at 839.138 kb on - strand, within DZA65_RS03950 at 839.138 kb on - strand, within DZA65_RS03950 at 839.145 kb on - strand at 839.161 kb on - strand at 839.161 kb on - strand at 839.193 kb on + strand at 839.193 kb on + strand at 839.193 kb on + strand at 839.246 kb on + strand at 839.368 kb on + strand at 839.374 kb on - strand at 839.421 kb on - strand at 839.422 kb on + strand at 839.428 kb on + strand at 839.428 kb on + strand at 839.428 kb on + strand at 839.429 kb on - strand at 839.510 kb on + strand at 839.637 kb on - strand, within DZA65_RS03955 at 839.736 kb on - strand, within DZA65_RS03955 at 839.736 kb on - strand, within DZA65_RS03955 at 839.755 kb on + strand, within DZA65_RS03955 at 839.756 kb on - strand, within DZA65_RS03955 at 839.759 kb on - strand, within DZA65_RS03955 at 839.878 kb on + strand, within DZA65_RS03955 at 840.017 kb on + strand at 840.018 kb on - strand at 840.018 kb on - strand at 840.063 kb on - strand at 840.063 kb on - strand at 840.063 kb on - strand at 840.065 kb on + strand at 840.065 kb on + strand at 840.191 kb on - strand at 840.206 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 837,317 + DZA65_RS03940 0.78 -0.7 837,318 - DZA65_RS03940 0.78 -1.0 837,318 - DZA65_RS03940 0.78 -1.5 837,321 + DZA65_RS03940 0.78 +0.2 837,321 + DZA65_RS03940 0.78 +0.4 837,322 - DZA65_RS03940 0.78 -0.2 837,335 - DZA65_RS03940 0.80 -1.7 837,343 + DZA65_RS03940 0.81 -1.4 837,343 + DZA65_RS03940 0.81 -0.4 837,343 + DZA65_RS03940 0.81 -0.2 837,363 + DZA65_RS03940 0.84 -1.1 837,363 + DZA65_RS03940 0.84 -1.1 837,363 + DZA65_RS03940 0.84 +0.6 837,364 - DZA65_RS03940 0.84 +2.3 837,364 - DZA65_RS03940 0.84 +1.5 837,364 - DZA65_RS03940 0.84 -0.4 837,364 - DZA65_RS03940 0.84 -1.5 837,364 - DZA65_RS03940 0.84 -2.6 837,384 + DZA65_RS03940 0.87 -0.7 837,385 - DZA65_RS03940 0.87 +0.3 837,385 - DZA65_RS03940 0.87 +0.0 837,438 - +0.9 837,458 + +0.4 837,459 - +0.6 837,459 - +1.2 837,468 - -0.5 837,486 - -0.0 837,525 + +0.6 837,528 + -1.1 837,529 - -0.5 837,540 + -2.0 837,541 - +0.5 837,541 - -0.3 837,541 - -1.1 837,543 - -1.2 837,544 + +0.4 837,570 - +0.3 837,575 + +0.3 837,575 + -0.6 837,575 + -0.2 837,576 - +0.7 837,581 + +0.1 837,581 + +0.2 837,581 + +0.5 837,582 - -0.6 837,582 - +0.5 837,582 - -0.1 837,583 + -0.6 837,583 + -1.2 837,612 + -1.4 837,613 - +1.3 837,613 - +1.9 837,613 - -0.2 837,613 - -0.6 837,613 - -0.1 837,654 + -0.9 837,654 + -1.0 837,655 - -1.1 837,655 - -0.1 837,677 + +0.1 837,713 + -0.4 837,758 + -0.7 837,779 + -0.7 838,307 + -0.4 838,307 + -1.2 838,307 + -0.6 838,307 + -1.4 838,307 + -2.6 838,308 - -0.2 838,308 - -0.7 838,309 + +0.6 838,309 + -1.3 838,309 + -0.3 838,310 - -0.5 838,327 + +1.9 838,412 + DZA65_RS03950 0.11 +1.2 838,412 + DZA65_RS03950 0.11 -0.7 838,412 + DZA65_RS03950 0.11 +0.1 838,412 + DZA65_RS03950 0.11 +0.2 838,413 - DZA65_RS03950 0.11 +0.2 838,413 - DZA65_RS03950 0.11 +0.5 838,413 - DZA65_RS03950 0.11 -0.9 838,425 - DZA65_RS03950 0.12 -1.1 838,425 - DZA65_RS03950 0.12 +0.5 838,425 - DZA65_RS03950 0.12 +1.0 838,459 + DZA65_RS03950 0.16 +0.1 838,460 - DZA65_RS03950 0.16 -0.4 838,460 - DZA65_RS03950 0.16 +1.0 838,460 - DZA65_RS03950 0.16 +1.1 838,460 - DZA65_RS03950 0.16 +0.6 838,579 + DZA65_RS03950 0.29 -0.6 838,579 + DZA65_RS03950 0.29 +0.3 838,580 - DZA65_RS03950 0.29 +0.9 838,589 + DZA65_RS03950 0.30 +0.3 838,589 + DZA65_RS03950 0.30 -0.8 838,589 + DZA65_RS03950 0.30 -1.2 838,590 - DZA65_RS03950 0.30 -0.8 838,659 - DZA65_RS03950 0.38 -0.3 838,659 - DZA65_RS03950 0.38 -0.4 838,668 + DZA65_RS03950 0.39 +0.4 838,668 + DZA65_RS03950 0.39 -0.6 838,668 + DZA65_RS03950 0.39 +0.5 838,668 + DZA65_RS03950 0.39 -1.2 838,668 + DZA65_RS03950 0.39 +1.0 838,668 + DZA65_RS03950 0.39 +0.2 838,668 + DZA65_RS03950 0.39 +0.6 838,669 - DZA65_RS03950 0.39 -1.8 838,669 - DZA65_RS03950 0.39 -0.1 838,669 - DZA65_RS03950 0.39 +0.4 838,669 - DZA65_RS03950 0.39 +0.6 838,669 - DZA65_RS03950 0.39 -2.1 838,669 - DZA65_RS03950 0.39 +0.6 838,669 - DZA65_RS03950 0.39 +1.0 838,669 - DZA65_RS03950 0.39 -1.0 838,669 - DZA65_RS03950 0.39 +1.0 838,669 - DZA65_RS03950 0.39 -0.2 838,669 - DZA65_RS03950 0.39 -0.7 838,669 - DZA65_RS03950 0.39 +0.5 838,669 - DZA65_RS03950 0.39 -2.3 838,669 - DZA65_RS03950 0.39 +0.0 838,689 + DZA65_RS03950 0.41 -1.4 838,690 - DZA65_RS03950 0.41 -1.6 838,721 - DZA65_RS03950 0.44 +0.6 838,766 + DZA65_RS03950 0.49 -0.9 838,766 + DZA65_RS03950 0.49 -1.0 838,767 - DZA65_RS03950 0.49 +0.0 838,767 - DZA65_RS03950 0.49 -0.7 838,767 - DZA65_RS03950 0.49 -0.9 838,768 + DZA65_RS03950 0.50 -2.0 838,768 + DZA65_RS03950 0.50 -2.1 838,768 + DZA65_RS03950 0.50 +0.3 838,768 + DZA65_RS03950 0.50 +0.7 838,769 - DZA65_RS03950 0.50 -1.2 838,769 - DZA65_RS03950 0.50 -2.0 838,769 - DZA65_RS03950 0.50 -2.1 838,769 - DZA65_RS03950 0.50 -0.4 838,789 - DZA65_RS03950 0.52 +0.3 838,795 + DZA65_RS03950 0.53 +0.2 838,795 + DZA65_RS03950 0.53 -1.0 838,796 - DZA65_RS03950 0.53 +0.0 838,796 - DZA65_RS03950 0.53 -0.2 838,799 + DZA65_RS03950 0.53 -0.3 838,799 + DZA65_RS03950 0.53 -0.4 838,799 + DZA65_RS03950 0.53 +0.8 838,799 + DZA65_RS03950 0.53 -1.0 838,799 + DZA65_RS03950 0.53 +2.0 838,799 + DZA65_RS03950 0.53 -1.0 838,799 + DZA65_RS03950 0.53 -1.4 838,799 + DZA65_RS03950 0.53 -0.1 838,799 + +0.0 838,800 - DZA65_RS03950 0.53 -1.7 838,800 - DZA65_RS03950 0.53 +0.0 838,800 - DZA65_RS03950 0.53 -1.0 838,800 - DZA65_RS03950 0.53 -1.0 838,800 - DZA65_RS03950 0.53 -1.1 838,800 - DZA65_RS03950 0.53 +0.3 838,809 + DZA65_RS03950 0.54 -0.7 838,820 + DZA65_RS03950 0.55 -0.7 838,829 - DZA65_RS03950 0.56 +0.3 838,829 - DZA65_RS03950 0.56 -1.1 838,837 + DZA65_RS03950 0.57 +0.3 838,837 + DZA65_RS03950 0.57 +1.1 838,837 + DZA65_RS03950 0.57 -0.3 838,838 - +2.2 838,838 - DZA65_RS03950 0.57 +1.6 838,901 + DZA65_RS03950 0.64 -1.7 838,901 + DZA65_RS03950 0.64 -1.9 838,901 + DZA65_RS03950 0.64 +0.9 838,901 + DZA65_RS03950 0.64 +0.1 838,902 - DZA65_RS03950 0.64 -0.2 838,902 - DZA65_RS03950 0.64 +0.0 838,902 - DZA65_RS03950 0.64 -2.6 838,902 - DZA65_RS03950 0.64 +0.7 838,902 - DZA65_RS03950 0.64 -0.4 838,929 + DZA65_RS03950 0.67 +0.6 838,929 + DZA65_RS03950 0.67 -0.2 838,929 + DZA65_RS03950 0.67 -1.6 838,930 - DZA65_RS03950 0.67 +0.1 838,930 - DZA65_RS03950 0.67 -2.3 838,958 + DZA65_RS03950 0.70 +0.3 838,958 + DZA65_RS03950 0.70 -0.9 838,958 + DZA65_RS03950 0.70 +0.4 838,958 + DZA65_RS03950 0.70 -0.8 838,958 + DZA65_RS03950 0.70 +0.8 838,958 + DZA65_RS03950 0.70 +2.3 838,959 - DZA65_RS03950 0.70 -0.2 838,959 - DZA65_RS03950 0.70 +0.9 838,959 - DZA65_RS03950 0.70 -0.3 838,959 - DZA65_RS03950 0.70 +0.3 839,009 + DZA65_RS03950 0.76 +0.0 839,009 + DZA65_RS03950 0.76 -0.2 839,009 + +0.6 839,009 + DZA65_RS03950 0.76 +0.0 839,009 + DZA65_RS03950 0.76 -0.3 839,010 - DZA65_RS03950 0.76 -2.2 839,010 - DZA65_RS03950 0.76 +0.2 839,019 + DZA65_RS03950 0.77 -0.6 839,019 + DZA65_RS03950 0.77 +1.6 839,020 - DZA65_RS03950 0.77 -1.9 839,020 - DZA65_RS03950 0.77 -1.0 839,020 - DZA65_RS03950 0.77 +1.0 839,034 + DZA65_RS03950 0.79 +0.2 839,072 - DZA65_RS03950 0.83 -0.4 839,137 + DZA65_RS03950 0.90 +0.6 839,138 - DZA65_RS03950 0.90 +0.6 839,138 - DZA65_RS03950 0.90 +0.0 839,145 - -1.3 839,161 - -0.6 839,161 - -0.3 839,193 + +0.2 839,193 + +0.0 839,193 + -1.0 839,246 + -1.6 839,368 + +1.0 839,374 - -0.2 839,421 - -0.6 839,422 + +0.0 839,428 + +0.2 839,428 + -0.7 839,428 + -1.6 839,429 - +0.3 839,510 + -0.3 839,637 - DZA65_RS03955 0.28 -1.6 839,736 - DZA65_RS03955 0.45 -1.0 839,736 - DZA65_RS03955 0.45 -1.1 839,755 + DZA65_RS03955 0.48 -1.2 839,756 - DZA65_RS03955 0.48 -0.2 839,759 - DZA65_RS03955 0.49 +0.3 839,878 + DZA65_RS03955 0.69 +0.1 840,017 + -3.3 840,018 - +0.1 840,018 - -0.4 840,063 - +0.8 840,063 - +1.6 840,063 - -0.1 840,065 + -0.1 840,065 + +1.0 840,191 - -1.2 840,206 + -0.2
Or see this region's nucleotide sequence