Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS03730 and DZA65_RS03735 overlap by 8 nucleotides DZA65_RS03735 and DZA65_RS03740 are separated by 42 nucleotides DZA65_RS03740 and DZA65_RS03745 are separated by 344 nucleotides
DZA65_RS03730: DZA65_RS03730 - ABC transporter permease, at 788,096 to 789,001
_RS03730
DZA65_RS03735: DZA65_RS03735 - ATP-binding cassette domain-containing protein, at 788,994 to 789,869
_RS03735
DZA65_RS03740: DZA65_RS03740 - ABC transporter ATP-binding protein, at 789,912 to 790,685
_RS03740
DZA65_RS03745: DZA65_RS03745 - AI-2E family transporter, at 791,030 to 792,040
_RS03745
Position (kb) 789
790
791 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 788.970 kb on + strand at 788.999 kb on + strand at 789.000 kb on - strand at 789.000 kb on - strand at 789.000 kb on - strand at 789.000 kb on - strand at 789.007 kb on + strand at 789.007 kb on + strand at 789.007 kb on + strand at 789.007 kb on + strand at 789.008 kb on - strand at 789.008 kb on - strand at 789.008 kb on - strand at 789.008 kb on - strand at 789.008 kb on - strand at 789.008 kb on - strand at 789.008 kb on - strand at 789.008 kb on - strand at 789.008 kb on - strand at 789.173 kb on + strand, within DZA65_RS03735 at 789.243 kb on - strand, within DZA65_RS03735 at 789.330 kb on + strand, within DZA65_RS03735 at 789.330 kb on + strand, within DZA65_RS03735 at 789.330 kb on + strand at 789.331 kb on - strand, within DZA65_RS03735 at 789.378 kb on + strand, within DZA65_RS03735 at 789.378 kb on + strand, within DZA65_RS03735 at 789.378 kb on + strand, within DZA65_RS03735 at 789.378 kb on + strand, within DZA65_RS03735 at 789.379 kb on - strand, within DZA65_RS03735 at 789.379 kb on - strand, within DZA65_RS03735 at 789.379 kb on - strand, within DZA65_RS03735 at 789.469 kb on + strand, within DZA65_RS03735 at 789.471 kb on + strand, within DZA65_RS03735 at 789.471 kb on + strand, within DZA65_RS03735 at 789.472 kb on - strand, within DZA65_RS03735 at 789.472 kb on - strand, within DZA65_RS03735 at 789.472 kb on - strand, within DZA65_RS03735 at 789.518 kb on + strand, within DZA65_RS03735 at 789.518 kb on + strand, within DZA65_RS03735 at 789.518 kb on + strand, within DZA65_RS03735 at 789.519 kb on - strand, within DZA65_RS03735 at 789.519 kb on - strand, within DZA65_RS03735 at 789.519 kb on - strand, within DZA65_RS03735 at 789.519 kb on - strand, within DZA65_RS03735 at 789.659 kb on + strand, within DZA65_RS03735 at 789.714 kb on + strand, within DZA65_RS03735 at 789.714 kb on + strand, within DZA65_RS03735 at 789.714 kb on + strand, within DZA65_RS03735 at 789.714 kb on + strand, within DZA65_RS03735 at 789.714 kb on + strand, within DZA65_RS03735 at 789.714 kb on + strand, within DZA65_RS03735 at 789.714 kb on + strand, within DZA65_RS03735 at 789.714 kb on + strand, within DZA65_RS03735 at 789.715 kb on - strand, within DZA65_RS03735 at 789.715 kb on - strand, within DZA65_RS03735 at 789.728 kb on - strand, within DZA65_RS03735 at 789.774 kb on + strand, within DZA65_RS03735 at 789.774 kb on + strand, within DZA65_RS03735 at 789.775 kb on - strand, within DZA65_RS03735 at 789.775 kb on - strand at 789.775 kb on - strand, within DZA65_RS03735 at 789.775 kb on - strand, within DZA65_RS03735 at 789.775 kb on - strand, within DZA65_RS03735 at 789.775 kb on - strand, within DZA65_RS03735 at 789.878 kb on + strand at 789.878 kb on + strand at 789.879 kb on - strand at 789.975 kb on + strand at 789.975 kb on + strand at 789.975 kb on + strand at 789.975 kb on + strand at 789.975 kb on + strand at 789.975 kb on + strand at 789.975 kb on + strand at 789.976 kb on - strand at 789.976 kb on - strand at 789.976 kb on - strand at 789.976 kb on - strand at 789.976 kb on - strand at 789.976 kb on - strand at 790.076 kb on + strand, within DZA65_RS03740 at 790.077 kb on - strand, within DZA65_RS03740 at 790.096 kb on + strand, within DZA65_RS03740 at 790.096 kb on + strand, within DZA65_RS03740 at 790.096 kb on + strand, within DZA65_RS03740 at 790.096 kb on + strand, within DZA65_RS03740 at 790.096 kb on + strand, within DZA65_RS03740 at 790.096 kb on + strand, within DZA65_RS03740 at 790.097 kb on - strand, within DZA65_RS03740 at 790.097 kb on - strand, within DZA65_RS03740 at 790.097 kb on - strand, within DZA65_RS03740 at 790.097 kb on - strand, within DZA65_RS03740 at 790.231 kb on + strand, within DZA65_RS03740 at 790.231 kb on + strand at 790.232 kb on - strand, within DZA65_RS03740 at 790.232 kb on - strand, within DZA65_RS03740 at 790.268 kb on + strand, within DZA65_RS03740 at 790.274 kb on - strand, within DZA65_RS03740 at 790.485 kb on + strand, within DZA65_RS03740 at 790.485 kb on + strand, within DZA65_RS03740 at 790.485 kb on + strand, within DZA65_RS03740 at 790.485 kb on + strand, within DZA65_RS03740 at 790.485 kb on + strand, within DZA65_RS03740 at 790.485 kb on + strand, within DZA65_RS03740 at 790.485 kb on + strand, within DZA65_RS03740 at 790.486 kb on - strand, within DZA65_RS03740 at 790.486 kb on - strand, within DZA65_RS03740 at 790.486 kb on - strand, within DZA65_RS03740 at 790.486 kb on - strand, within DZA65_RS03740 at 790.486 kb on - strand, within DZA65_RS03740 at 790.486 kb on - strand, within DZA65_RS03740 at 790.533 kb on - strand, within DZA65_RS03740 at 790.552 kb on - strand, within DZA65_RS03740 at 790.588 kb on + strand, within DZA65_RS03740 at 790.588 kb on + strand, within DZA65_RS03740 at 790.588 kb on + strand, within DZA65_RS03740 at 790.614 kb on + strand at 790.615 kb on - strand at 790.616 kb on + strand at 790.616 kb on + strand at 790.616 kb on + strand at 790.616 kb on + strand at 790.617 kb on - strand at 790.617 kb on - strand at 790.617 kb on - strand at 790.648 kb on - strand at 790.648 kb on - strand at 790.648 kb on - strand at 790.648 kb on - strand at 790.683 kb on + strand at 790.683 kb on + strand at 790.683 kb on + strand at 790.684 kb on - strand at 790.684 kb on - strand at 790.684 kb on - strand at 790.684 kb on - strand at 790.684 kb on - strand at 790.684 kb on - strand at 790.698 kb on + strand at 790.712 kb on + strand at 790.713 kb on - strand at 790.713 kb on - strand at 790.841 kb on + strand at 790.841 kb on + strand at 790.841 kb on + strand at 790.842 kb on - strand at 790.842 kb on - strand at 790.842 kb on - strand at 790.842 kb on - strand at 790.842 kb on - strand at 790.842 kb on - strand at 790.842 kb on - strand at 790.842 kb on - strand at 790.842 kb on - strand at 790.842 kb on - strand at 790.842 kb on - strand at 790.845 kb on + strand at 790.846 kb on - strand at 790.846 kb on - strand at 790.846 kb on - strand at 790.852 kb on + strand at 790.853 kb on - strand at 790.872 kb on + strand at 790.895 kb on + strand at 790.895 kb on + strand at 790.921 kb on + strand at 790.924 kb on + strand at 791.006 kb on + strand at 791.006 kb on + strand at 791.006 kb on + strand at 791.006 kb on + strand at 791.006 kb on + strand at 791.006 kb on + strand at 791.006 kb on + strand at 791.006 kb on + strand at 791.007 kb on - strand at 791.007 kb on - strand at 791.007 kb on - strand at 791.007 kb on - strand at 791.029 kb on + strand at 791.029 kb on + strand at 791.029 kb on + strand at 791.029 kb on + strand at 791.029 kb on + strand at 791.030 kb on - strand at 791.030 kb on - strand at 791.030 kb on - strand at 791.077 kb on + strand at 791.078 kb on - strand at 791.078 kb on - strand at 791.078 kb on - strand at 791.081 kb on - strand at 791.081 kb on - strand at 791.081 kb on - strand at 791.147 kb on + strand, within DZA65_RS03745 at 791.147 kb on + strand, within DZA65_RS03745 at 791.147 kb on + strand, within DZA65_RS03745 at 791.147 kb on + strand, within DZA65_RS03745 at 791.147 kb on + strand, within DZA65_RS03745 at 791.148 kb on - strand, within DZA65_RS03745 at 791.158 kb on + strand, within DZA65_RS03745 at 791.163 kb on + strand, within DZA65_RS03745 at 791.163 kb on + strand, within DZA65_RS03745 at 791.163 kb on + strand, within DZA65_RS03745 at 791.164 kb on - strand, within DZA65_RS03745 at 791.164 kb on - strand, within DZA65_RS03745 at 791.164 kb on - strand, within DZA65_RS03745 at 791.164 kb on - strand, within DZA65_RS03745 at 791.164 kb on - strand, within DZA65_RS03745 at 791.164 kb on - strand, within DZA65_RS03745 at 791.164 kb on - strand, within DZA65_RS03745 at 791.336 kb on - strand, within DZA65_RS03745 at 791.362 kb on + strand, within DZA65_RS03745 at 791.362 kb on + strand, within DZA65_RS03745 at 791.362 kb on + strand, within DZA65_RS03745 at 791.362 kb on + strand, within DZA65_RS03745 at 791.363 kb on - strand, within DZA65_RS03745 at 791.363 kb on - strand, within DZA65_RS03745 at 791.370 kb on - strand, within DZA65_RS03745 at 791.370 kb on - strand, within DZA65_RS03745 at 791.370 kb on - strand, within DZA65_RS03745 at 791.381 kb on + strand, within DZA65_RS03745 at 791.382 kb on - strand, within DZA65_RS03745 at 791.382 kb on - strand, within DZA65_RS03745 at 791.397 kb on + strand, within DZA65_RS03745 at 791.397 kb on + strand, within DZA65_RS03745 at 791.398 kb on - strand, within DZA65_RS03745 at 791.398 kb on - strand, within DZA65_RS03745 at 791.504 kb on - strand, within DZA65_RS03745 at 791.531 kb on + strand, within DZA65_RS03745 at 791.531 kb on + strand, within DZA65_RS03745 at 791.531 kb on + strand, within DZA65_RS03745 at 791.531 kb on + strand, within DZA65_RS03745 at 791.531 kb on + strand, within DZA65_RS03745 at 791.531 kb on + strand, within DZA65_RS03745 at 791.531 kb on + strand, within DZA65_RS03745 at 791.531 kb on + strand, within DZA65_RS03745 at 791.531 kb on + strand, within DZA65_RS03745 at 791.532 kb on - strand, within DZA65_RS03745 at 791.532 kb on - strand, within DZA65_RS03745 at 791.532 kb on - strand, within DZA65_RS03745 at 791.532 kb on - strand, within DZA65_RS03745 at 791.532 kb on - strand, within DZA65_RS03745 at 791.532 kb on - strand, within DZA65_RS03745 at 791.532 kb on - strand, within DZA65_RS03745 at 791.532 kb on - strand, within DZA65_RS03745 at 791.532 kb on - strand, within DZA65_RS03745 at 791.532 kb on - strand, within DZA65_RS03745 at 791.532 kb on - strand, within DZA65_RS03745 at 791.532 kb on - strand, within DZA65_RS03745 at 791.532 kb on - strand, within DZA65_RS03745 at 791.533 kb on + strand, within DZA65_RS03745 at 791.533 kb on + strand, within DZA65_RS03745 at 791.534 kb on - strand, within DZA65_RS03745 at 791.534 kb on - strand, within DZA65_RS03745 at 791.649 kb on + strand, within DZA65_RS03745 at 791.649 kb on + strand, within DZA65_RS03745 at 791.650 kb on - strand, within DZA65_RS03745 at 791.650 kb on - strand, within DZA65_RS03745 at 791.658 kb on + strand, within DZA65_RS03745 at 791.659 kb on - strand, within DZA65_RS03745 at 791.674 kb on + strand, within DZA65_RS03745
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 788,970 + -1.7 788,999 + +0.0 789,000 - +0.8 789,000 - +0.5 789,000 - +0.0 789,000 - -0.7 789,007 + +0.6 789,007 + -0.5 789,007 + -2.0 789,007 + +0.6 789,008 - +1.0 789,008 - -0.1 789,008 - +1.0 789,008 - -0.1 789,008 - +0.3 789,008 - -0.6 789,008 - +0.0 789,008 - +0.9 789,008 - -0.6 789,173 + DZA65_RS03735 0.20 +1.0 789,243 - DZA65_RS03735 0.28 -1.4 789,330 + DZA65_RS03735 0.38 -0.8 789,330 + DZA65_RS03735 0.38 +1.6 789,330 + -1.0 789,331 - DZA65_RS03735 0.38 +0.4 789,378 + DZA65_RS03735 0.44 -1.0 789,378 + DZA65_RS03735 0.44 -1.1 789,378 + DZA65_RS03735 0.44 +0.6 789,378 + DZA65_RS03735 0.44 -1.4 789,379 - DZA65_RS03735 0.44 +0.2 789,379 - DZA65_RS03735 0.44 -0.1 789,379 - DZA65_RS03735 0.44 -0.3 789,469 + DZA65_RS03735 0.54 -2.3 789,471 + DZA65_RS03735 0.54 +1.2 789,471 + DZA65_RS03735 0.54 -0.8 789,472 - DZA65_RS03735 0.55 -0.4 789,472 - DZA65_RS03735 0.55 -1.0 789,472 - DZA65_RS03735 0.55 -0.0 789,518 + DZA65_RS03735 0.60 -0.3 789,518 + DZA65_RS03735 0.60 -1.4 789,518 + DZA65_RS03735 0.60 +1.2 789,519 - DZA65_RS03735 0.60 +0.6 789,519 - DZA65_RS03735 0.60 -0.4 789,519 - DZA65_RS03735 0.60 -0.3 789,519 - DZA65_RS03735 0.60 -0.7 789,659 + DZA65_RS03735 0.76 -1.2 789,714 + DZA65_RS03735 0.82 -0.9 789,714 + DZA65_RS03735 0.82 -0.5 789,714 + DZA65_RS03735 0.82 -0.7 789,714 + DZA65_RS03735 0.82 -0.1 789,714 + DZA65_RS03735 0.82 -1.4 789,714 + DZA65_RS03735 0.82 +0.4 789,714 + DZA65_RS03735 0.82 -0.6 789,714 + DZA65_RS03735 0.82 +0.0 789,715 - DZA65_RS03735 0.82 +0.2 789,715 - DZA65_RS03735 0.82 -0.4 789,728 - DZA65_RS03735 0.84 +3.2 789,774 + DZA65_RS03735 0.89 -2.0 789,774 + DZA65_RS03735 0.89 -0.9 789,775 - DZA65_RS03735 0.89 +0.4 789,775 - +2.6 789,775 - DZA65_RS03735 0.89 -0.3 789,775 - DZA65_RS03735 0.89 +0.3 789,775 - DZA65_RS03735 0.89 -0.4 789,775 - DZA65_RS03735 0.89 -1.4 789,878 + +0.4 789,878 + -0.7 789,879 - -0.5 789,975 + +0.1 789,975 + +1.0 789,975 + -0.1 789,975 + -0.8 789,975 + -1.7 789,975 + -1.3 789,975 + +0.4 789,976 - +0.0 789,976 - +1.6 789,976 - -0.4 789,976 - -1.0 789,976 - +0.7 789,976 - -0.5 790,076 + DZA65_RS03740 0.21 -1.4 790,077 - DZA65_RS03740 0.21 -1.0 790,096 + DZA65_RS03740 0.24 +0.2 790,096 + DZA65_RS03740 0.24 +0.6 790,096 + DZA65_RS03740 0.24 -0.9 790,096 + DZA65_RS03740 0.24 +0.3 790,096 + DZA65_RS03740 0.24 +0.0 790,096 + DZA65_RS03740 0.24 -1.6 790,097 - DZA65_RS03740 0.24 -1.0 790,097 - DZA65_RS03740 0.24 -1.8 790,097 - DZA65_RS03740 0.24 -0.8 790,097 - DZA65_RS03740 0.24 -0.1 790,231 + DZA65_RS03740 0.41 +0.0 790,231 + +1.0 790,232 - DZA65_RS03740 0.41 -0.3 790,232 - DZA65_RS03740 0.41 -0.7 790,268 + DZA65_RS03740 0.46 -0.5 790,274 - DZA65_RS03740 0.47 -0.1 790,485 + DZA65_RS03740 0.74 +0.2 790,485 + DZA65_RS03740 0.74 +0.6 790,485 + DZA65_RS03740 0.74 -0.1 790,485 + DZA65_RS03740 0.74 +1.1 790,485 + DZA65_RS03740 0.74 +0.1 790,485 + DZA65_RS03740 0.74 +0.6 790,485 + DZA65_RS03740 0.74 +1.0 790,486 - DZA65_RS03740 0.74 -0.7 790,486 - DZA65_RS03740 0.74 +0.9 790,486 - DZA65_RS03740 0.74 -1.2 790,486 - DZA65_RS03740 0.74 -0.7 790,486 - DZA65_RS03740 0.74 +2.2 790,486 - DZA65_RS03740 0.74 -0.1 790,533 - DZA65_RS03740 0.80 -3.2 790,552 - DZA65_RS03740 0.83 -0.1 790,588 + DZA65_RS03740 0.87 -0.9 790,588 + DZA65_RS03740 0.87 +0.7 790,588 + DZA65_RS03740 0.87 -0.4 790,614 + -1.1 790,615 - +0.1 790,616 + -1.6 790,616 + +0.0 790,616 + -0.6 790,616 + -1.0 790,617 - -0.2 790,617 - +1.0 790,617 - -1.0 790,648 - +0.5 790,648 - +0.0 790,648 - -1.4 790,648 - -1.0 790,683 + +0.6 790,683 + -0.7 790,683 + -0.4 790,684 - +0.3 790,684 - -1.2 790,684 - +0.0 790,684 - -0.3 790,684 - -0.2 790,684 - -1.0 790,698 + +0.2 790,712 + -0.6 790,713 - -0.8 790,713 - +0.2 790,841 + +0.6 790,841 + -0.2 790,841 + -0.7 790,842 - -0.8 790,842 - -1.2 790,842 - -0.4 790,842 - +0.6 790,842 - -0.7 790,842 - -0.7 790,842 - -1.1 790,842 - -0.4 790,842 - -0.5 790,842 - -1.6 790,842 - -1.2 790,845 + -1.6 790,846 - -1.2 790,846 - +1.0 790,846 - -1.0 790,852 + -0.7 790,853 - -0.2 790,872 + -2.0 790,895 + +0.2 790,895 + -1.2 790,921 + +1.0 790,924 + -2.1 791,006 + +1.0 791,006 + +1.6 791,006 + -0.4 791,006 + +0.5 791,006 + -0.9 791,006 + -0.1 791,006 + -0.7 791,006 + +0.3 791,007 - -0.5 791,007 - -2.7 791,007 - +0.3 791,007 - -0.1 791,029 + -1.8 791,029 + -1.0 791,029 + -0.7 791,029 + -0.2 791,029 + -1.7 791,030 - +0.2 791,030 - +1.1 791,030 - -1.0 791,077 + -1.2 791,078 - +1.1 791,078 - +0.6 791,078 - +1.4 791,081 - -0.4 791,081 - -0.7 791,081 - -0.5 791,147 + DZA65_RS03745 0.12 +0.6 791,147 + DZA65_RS03745 0.12 +0.6 791,147 + DZA65_RS03745 0.12 -0.7 791,147 + DZA65_RS03745 0.12 -1.8 791,147 + DZA65_RS03745 0.12 -1.9 791,148 - DZA65_RS03745 0.12 -1.6 791,158 + DZA65_RS03745 0.13 +0.8 791,163 + DZA65_RS03745 0.13 -0.6 791,163 + DZA65_RS03745 0.13 -2.2 791,163 + DZA65_RS03745 0.13 +0.0 791,164 - DZA65_RS03745 0.13 -0.6 791,164 - DZA65_RS03745 0.13 -0.7 791,164 - DZA65_RS03745 0.13 -2.4 791,164 - DZA65_RS03745 0.13 -1.7 791,164 - DZA65_RS03745 0.13 -0.2 791,164 - DZA65_RS03745 0.13 +0.1 791,164 - DZA65_RS03745 0.13 -0.4 791,336 - DZA65_RS03745 0.30 -1.0 791,362 + DZA65_RS03745 0.33 -0.7 791,362 + DZA65_RS03745 0.33 -0.7 791,362 + DZA65_RS03745 0.33 +0.0 791,362 + DZA65_RS03745 0.33 -1.8 791,363 - DZA65_RS03745 0.33 -0.8 791,363 - DZA65_RS03745 0.33 -1.6 791,370 - DZA65_RS03745 0.34 -1.4 791,370 - DZA65_RS03745 0.34 +0.2 791,370 - DZA65_RS03745 0.34 +0.6 791,381 + DZA65_RS03745 0.35 -0.5 791,382 - DZA65_RS03745 0.35 -1.1 791,382 - DZA65_RS03745 0.35 +0.5 791,397 + DZA65_RS03745 0.36 -1.0 791,397 + DZA65_RS03745 0.36 -0.6 791,398 - DZA65_RS03745 0.36 -0.2 791,398 - DZA65_RS03745 0.36 +0.6 791,504 - DZA65_RS03745 0.47 +0.2 791,531 + DZA65_RS03745 0.50 -0.2 791,531 + DZA65_RS03745 0.50 +2.2 791,531 + DZA65_RS03745 0.50 -0.5 791,531 + DZA65_RS03745 0.50 +0.3 791,531 + DZA65_RS03745 0.50 -1.8 791,531 + DZA65_RS03745 0.50 -0.7 791,531 + DZA65_RS03745 0.50 +1.2 791,531 + DZA65_RS03745 0.50 +1.3 791,531 + DZA65_RS03745 0.50 +0.6 791,532 - DZA65_RS03745 0.50 +0.3 791,532 - DZA65_RS03745 0.50 -2.3 791,532 - DZA65_RS03745 0.50 +0.4 791,532 - DZA65_RS03745 0.50 -0.3 791,532 - DZA65_RS03745 0.50 +0.0 791,532 - DZA65_RS03745 0.50 +0.4 791,532 - DZA65_RS03745 0.50 -1.2 791,532 - DZA65_RS03745 0.50 -0.2 791,532 - DZA65_RS03745 0.50 +0.4 791,532 - DZA65_RS03745 0.50 -1.5 791,532 - DZA65_RS03745 0.50 +0.1 791,532 - DZA65_RS03745 0.50 -1.8 791,532 - DZA65_RS03745 0.50 -2.0 791,533 + DZA65_RS03745 0.50 -0.7 791,533 + DZA65_RS03745 0.50 -0.2 791,534 - DZA65_RS03745 0.50 +0.5 791,534 - DZA65_RS03745 0.50 -0.6 791,649 + DZA65_RS03745 0.61 -0.6 791,649 + DZA65_RS03745 0.61 +1.6 791,650 - DZA65_RS03745 0.61 -1.0 791,650 - DZA65_RS03745 0.61 -0.4 791,658 + DZA65_RS03745 0.62 -3.0 791,659 - DZA65_RS03745 0.62 +0.7 791,674 + DZA65_RS03745 0.64 +0.9
Or see this region's nucleotide sequence