Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS03670 and DZA65_RS03675 are separated by 806 nucleotides DZA65_RS03675 and DZA65_RS03680 are separated by 210 nucleotides
DZA65_RS03670: DZA65_RS03670 - kdo(2)-lipid IV(A) palmitoleoyltransferase, at 772,225 to 773,145
_RS03670
DZA65_RS03675: DZA65_RS03675 - NCS2 family permease, at 773,952 to 775,319
_RS03675
DZA65_RS03680: DZA65_RS03680 - Na+/H+ antiporter, at 775,530 to 777,176
_RS03680
Position (kb) 773
774
775
776 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 772.970 kb on - strand, within DZA65_RS03670 at 772.971 kb on + strand, within DZA65_RS03670 at 772.971 kb on + strand, within DZA65_RS03670 at 772.971 kb on + strand, within DZA65_RS03670 at 772.971 kb on + strand, within DZA65_RS03670 at 772.971 kb on + strand, within DZA65_RS03670 at 772.971 kb on + strand, within DZA65_RS03670 at 772.972 kb on - strand, within DZA65_RS03670 at 772.972 kb on - strand, within DZA65_RS03670 at 772.972 kb on - strand, within DZA65_RS03670 at 773.035 kb on + strand, within DZA65_RS03670 at 773.036 kb on - strand, within DZA65_RS03670 at 773.083 kb on + strand at 773.087 kb on + strand at 773.087 kb on + strand at 773.088 kb on - strand at 773.088 kb on - strand at 773.188 kb on + strand at 773.188 kb on + strand at 773.188 kb on + strand at 773.188 kb on + strand at 773.189 kb on - strand at 773.189 kb on - strand at 773.189 kb on - strand at 773.189 kb on - strand at 773.191 kb on + strand at 773.191 kb on + strand at 773.191 kb on + strand at 773.192 kb on - strand at 773.235 kb on + strand at 773.292 kb on + strand at 773.292 kb on + strand at 773.293 kb on - strand at 773.293 kb on - strand at 773.293 kb on - strand at 773.317 kb on + strand at 773.317 kb on + strand at 773.317 kb on + strand at 773.318 kb on - strand at 773.318 kb on - strand at 773.326 kb on + strand at 773.327 kb on - strand at 773.327 kb on - strand at 773.327 kb on - strand at 773.340 kb on - strand at 773.340 kb on - strand at 773.402 kb on + strand at 773.402 kb on + strand at 773.403 kb on - strand at 773.403 kb on - strand at 773.403 kb on - strand at 773.422 kb on + strand at 773.423 kb on - strand at 773.426 kb on + strand at 773.427 kb on - strand at 773.454 kb on + strand at 773.454 kb on + strand at 773.454 kb on + strand at 773.455 kb on - strand at 773.501 kb on + strand at 773.570 kb on - strand at 773.570 kb on - strand at 773.672 kb on + strand at 773.673 kb on - strand at 773.704 kb on + strand at 773.705 kb on - strand at 773.849 kb on - strand at 773.885 kb on - strand at 773.894 kb on + strand at 773.900 kb on + strand at 773.900 kb on + strand at 773.901 kb on - strand at 773.926 kb on - strand at 773.946 kb on + strand at 773.947 kb on - strand at 773.947 kb on - strand at 774.023 kb on + strand at 774.024 kb on - strand at 774.024 kb on - strand at 774.024 kb on - strand at 774.024 kb on - strand at 774.024 kb on - strand at 774.024 kb on - strand at 774.091 kb on - strand, within DZA65_RS03675 at 774.122 kb on + strand, within DZA65_RS03675 at 774.123 kb on - strand, within DZA65_RS03675 at 774.281 kb on + strand, within DZA65_RS03675 at 774.281 kb on + strand, within DZA65_RS03675 at 774.282 kb on - strand, within DZA65_RS03675 at 774.282 kb on - strand, within DZA65_RS03675 at 774.282 kb on - strand at 774.282 kb on - strand, within DZA65_RS03675 at 774.314 kb on + strand, within DZA65_RS03675 at 774.314 kb on + strand, within DZA65_RS03675 at 774.315 kb on - strand, within DZA65_RS03675 at 774.315 kb on - strand, within DZA65_RS03675 at 774.315 kb on - strand, within DZA65_RS03675 at 774.315 kb on - strand, within DZA65_RS03675 at 774.315 kb on - strand, within DZA65_RS03675 at 774.315 kb on - strand, within DZA65_RS03675 at 774.325 kb on + strand, within DZA65_RS03675 at 774.325 kb on + strand, within DZA65_RS03675 at 774.325 kb on + strand, within DZA65_RS03675 at 774.332 kb on + strand, within DZA65_RS03675 at 774.434 kb on + strand, within DZA65_RS03675 at 774.434 kb on + strand, within DZA65_RS03675 at 774.645 kb on + strand, within DZA65_RS03675 at 774.645 kb on + strand, within DZA65_RS03675 at 774.645 kb on + strand, within DZA65_RS03675 at 774.645 kb on + strand, within DZA65_RS03675 at 774.645 kb on + strand, within DZA65_RS03675 at 774.646 kb on - strand, within DZA65_RS03675 at 774.646 kb on - strand, within DZA65_RS03675 at 774.646 kb on - strand, within DZA65_RS03675 at 774.646 kb on - strand, within DZA65_RS03675 at 774.646 kb on - strand, within DZA65_RS03675 at 774.713 kb on + strand, within DZA65_RS03675 at 774.714 kb on - strand at 774.845 kb on + strand, within DZA65_RS03675 at 774.846 kb on - strand, within DZA65_RS03675 at 774.927 kb on + strand, within DZA65_RS03675 at 774.927 kb on + strand, within DZA65_RS03675 at 774.927 kb on + strand, within DZA65_RS03675 at 774.927 kb on + strand, within DZA65_RS03675 at 774.928 kb on - strand, within DZA65_RS03675 at 775.032 kb on + strand, within DZA65_RS03675 at 775.032 kb on + strand, within DZA65_RS03675 at 775.033 kb on - strand, within DZA65_RS03675 at 775.048 kb on - strand, within DZA65_RS03675 at 775.071 kb on + strand, within DZA65_RS03675 at 775.071 kb on + strand, within DZA65_RS03675 at 775.071 kb on + strand, within DZA65_RS03675 at 775.071 kb on + strand, within DZA65_RS03675 at 775.071 kb on + strand, within DZA65_RS03675 at 775.071 kb on + strand, within DZA65_RS03675 at 775.071 kb on + strand, within DZA65_RS03675 at 775.071 kb on + strand, within DZA65_RS03675 at 775.071 kb on + strand, within DZA65_RS03675 at 775.071 kb on + strand, within DZA65_RS03675 at 775.072 kb on - strand, within DZA65_RS03675 at 775.072 kb on - strand, within DZA65_RS03675 at 775.072 kb on - strand, within DZA65_RS03675 at 775.072 kb on - strand, within DZA65_RS03675 at 775.072 kb on - strand, within DZA65_RS03675 at 775.072 kb on - strand, within DZA65_RS03675 at 775.072 kb on - strand, within DZA65_RS03675 at 775.072 kb on - strand, within DZA65_RS03675 at 775.072 kb on - strand, within DZA65_RS03675 at 775.072 kb on - strand, within DZA65_RS03675 at 775.072 kb on - strand, within DZA65_RS03675 at 775.072 kb on - strand, within DZA65_RS03675 at 775.072 kb on - strand, within DZA65_RS03675 at 775.072 kb on - strand, within DZA65_RS03675 at 775.072 kb on - strand, within DZA65_RS03675 at 775.147 kb on + strand, within DZA65_RS03675 at 775.148 kb on - strand, within DZA65_RS03675 at 775.156 kb on + strand, within DZA65_RS03675 at 775.175 kb on + strand, within DZA65_RS03675 at 775.175 kb on + strand, within DZA65_RS03675 at 775.175 kb on + strand, within DZA65_RS03675 at 775.176 kb on - strand, within DZA65_RS03675 at 775.178 kb on + strand, within DZA65_RS03675 at 775.178 kb on + strand, within DZA65_RS03675 at 775.179 kb on - strand, within DZA65_RS03675 at 775.179 kb on - strand, within DZA65_RS03675 at 775.179 kb on - strand, within DZA65_RS03675 at 775.267 kb on + strand at 775.267 kb on + strand at 775.267 kb on + strand at 775.268 kb on - strand at 775.271 kb on + strand at 775.271 kb on + strand at 775.272 kb on - strand at 775.296 kb on + strand at 775.297 kb on - strand at 775.317 kb on + strand at 775.318 kb on - strand at 775.330 kb on + strand at 775.331 kb on - strand at 775.370 kb on - strand at 775.426 kb on + strand at 775.506 kb on + strand at 775.507 kb on - strand at 775.507 kb on - strand at 775.507 kb on - strand at 775.538 kb on - strand at 775.600 kb on + strand at 775.600 kb on + strand at 775.601 kb on - strand at 775.601 kb on - strand at 775.701 kb on - strand, within DZA65_RS03680 at 775.772 kb on + strand, within DZA65_RS03680 at 775.772 kb on + strand, within DZA65_RS03680 at 775.772 kb on + strand, within DZA65_RS03680 at 775.772 kb on + strand, within DZA65_RS03680 at 775.773 kb on - strand, within DZA65_RS03680 at 775.773 kb on - strand, within DZA65_RS03680 at 775.773 kb on - strand, within DZA65_RS03680 at 775.814 kb on + strand, within DZA65_RS03680 at 775.815 kb on - strand, within DZA65_RS03680 at 775.972 kb on + strand, within DZA65_RS03680 at 775.972 kb on + strand, within DZA65_RS03680 at 775.973 kb on - strand, within DZA65_RS03680 at 775.973 kb on - strand, within DZA65_RS03680 at 776.086 kb on + strand, within DZA65_RS03680 at 776.087 kb on - strand, within DZA65_RS03680 at 776.136 kb on + strand, within DZA65_RS03680 at 776.136 kb on + strand, within DZA65_RS03680 at 776.137 kb on - strand, within DZA65_RS03680 at 776.137 kb on - strand, within DZA65_RS03680 at 776.197 kb on + strand, within DZA65_RS03680 at 776.198 kb on - strand, within DZA65_RS03680 at 776.201 kb on - strand, within DZA65_RS03680 at 776.201 kb on - strand, within DZA65_RS03680 at 776.201 kb on - strand, within DZA65_RS03680 at 776.201 kb on - strand, within DZA65_RS03680 at 776.226 kb on + strand, within DZA65_RS03680 at 776.227 kb on - strand, within DZA65_RS03680 at 776.288 kb on + strand, within DZA65_RS03680 at 776.288 kb on + strand, within DZA65_RS03680 at 776.289 kb on - strand, within DZA65_RS03680
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 772,970 - DZA65_RS03670 0.81 -1.9 772,971 + DZA65_RS03670 0.81 -1.5 772,971 + DZA65_RS03670 0.81 -2.1 772,971 + DZA65_RS03670 0.81 -1.0 772,971 + DZA65_RS03670 0.81 +0.3 772,971 + DZA65_RS03670 0.81 -1.7 772,971 + DZA65_RS03670 0.81 -0.7 772,972 - DZA65_RS03670 0.81 -1.0 772,972 - DZA65_RS03670 0.81 -1.0 772,972 - DZA65_RS03670 0.81 -1.2 773,035 + DZA65_RS03670 0.88 +0.6 773,036 - DZA65_RS03670 0.88 -0.3 773,083 + +1.6 773,087 + -1.9 773,087 + -1.7 773,088 - -0.8 773,088 - -1.7 773,188 + -1.0 773,188 + -0.7 773,188 + -1.5 773,188 + -1.2 773,189 - -0.6 773,189 - +0.9 773,189 - -1.1 773,189 - -0.7 773,191 + -1.1 773,191 + -1.3 773,191 + -1.3 773,192 - -0.4 773,235 + +1.4 773,292 + -2.2 773,292 + -0.3 773,293 - +1.2 773,293 - -1.2 773,293 - -0.4 773,317 + -0.8 773,317 + -1.0 773,317 + -0.1 773,318 - -0.1 773,318 - -0.3 773,326 + +0.8 773,327 - +0.0 773,327 - +1.9 773,327 - -1.8 773,340 - +0.6 773,340 - -0.3 773,402 + -1.6 773,402 + -1.3 773,403 - -1.8 773,403 - -0.5 773,403 - -2.2 773,422 + -0.1 773,423 - -0.5 773,426 + -0.7 773,427 - -1.8 773,454 + -1.0 773,454 + -0.1 773,454 + -2.1 773,455 - -0.9 773,501 + -0.7 773,570 - -2.2 773,570 - -0.4 773,672 + +0.0 773,673 - -1.3 773,704 + -0.8 773,705 - +0.2 773,849 - -2.5 773,885 - +1.0 773,894 + +0.2 773,900 + +0.0 773,900 + -0.8 773,901 - -0.7 773,926 - -0.5 773,946 + -1.2 773,947 - +1.2 773,947 - -1.7 774,023 + -0.8 774,024 - -1.1 774,024 - -0.9 774,024 - +0.3 774,024 - +0.3 774,024 - +0.3 774,024 - -0.2 774,091 - DZA65_RS03675 0.10 -0.7 774,122 + DZA65_RS03675 0.12 -1.1 774,123 - DZA65_RS03675 0.12 +0.0 774,281 + DZA65_RS03675 0.24 -0.5 774,281 + DZA65_RS03675 0.24 +0.2 774,282 - DZA65_RS03675 0.24 -0.3 774,282 - DZA65_RS03675 0.24 +0.3 774,282 - -1.0 774,282 - DZA65_RS03675 0.24 +0.8 774,314 + DZA65_RS03675 0.26 -0.5 774,314 + DZA65_RS03675 0.26 -1.4 774,315 - DZA65_RS03675 0.27 +1.9 774,315 - DZA65_RS03675 0.27 +1.0 774,315 - DZA65_RS03675 0.27 -0.2 774,315 - DZA65_RS03675 0.27 -2.4 774,315 - DZA65_RS03675 0.27 +0.4 774,315 - DZA65_RS03675 0.27 +0.6 774,325 + DZA65_RS03675 0.27 -0.4 774,325 + DZA65_RS03675 0.27 -0.5 774,325 + DZA65_RS03675 0.27 -0.5 774,332 + DZA65_RS03675 0.28 +0.0 774,434 + DZA65_RS03675 0.35 -2.0 774,434 + DZA65_RS03675 0.35 +0.0 774,645 + DZA65_RS03675 0.51 -0.7 774,645 + DZA65_RS03675 0.51 +0.3 774,645 + DZA65_RS03675 0.51 -0.1 774,645 + DZA65_RS03675 0.51 -1.0 774,645 + DZA65_RS03675 0.51 -0.2 774,646 - DZA65_RS03675 0.51 -0.5 774,646 - DZA65_RS03675 0.51 -1.7 774,646 - DZA65_RS03675 0.51 -0.0 774,646 - DZA65_RS03675 0.51 -0.5 774,646 - DZA65_RS03675 0.51 +3.2 774,713 + DZA65_RS03675 0.56 +0.3 774,714 - +0.6 774,845 + DZA65_RS03675 0.65 -0.5 774,846 - DZA65_RS03675 0.65 -1.4 774,927 + DZA65_RS03675 0.71 +1.0 774,927 + DZA65_RS03675 0.71 -0.7 774,927 + DZA65_RS03675 0.71 +0.2 774,927 + DZA65_RS03675 0.71 +0.4 774,928 - DZA65_RS03675 0.71 -1.8 775,032 + DZA65_RS03675 0.79 +0.3 775,032 + DZA65_RS03675 0.79 -0.1 775,033 - DZA65_RS03675 0.79 +0.1 775,048 - DZA65_RS03675 0.80 +0.6 775,071 + DZA65_RS03675 0.82 -1.0 775,071 + DZA65_RS03675 0.82 -0.8 775,071 + DZA65_RS03675 0.82 +0.6 775,071 + DZA65_RS03675 0.82 +0.2 775,071 + DZA65_RS03675 0.82 +1.6 775,071 + DZA65_RS03675 0.82 -1.3 775,071 + DZA65_RS03675 0.82 -0.0 775,071 + DZA65_RS03675 0.82 -0.7 775,071 + DZA65_RS03675 0.82 +0.1 775,071 + DZA65_RS03675 0.82 -1.2 775,072 - DZA65_RS03675 0.82 -0.2 775,072 - DZA65_RS03675 0.82 -0.7 775,072 - DZA65_RS03675 0.82 +0.8 775,072 - DZA65_RS03675 0.82 -0.8 775,072 - DZA65_RS03675 0.82 -0.1 775,072 - DZA65_RS03675 0.82 -0.6 775,072 - DZA65_RS03675 0.82 +0.1 775,072 - DZA65_RS03675 0.82 -2.4 775,072 - DZA65_RS03675 0.82 -2.3 775,072 - DZA65_RS03675 0.82 +0.6 775,072 - DZA65_RS03675 0.82 -2.1 775,072 - DZA65_RS03675 0.82 -0.1 775,072 - DZA65_RS03675 0.82 -0.4 775,072 - DZA65_RS03675 0.82 -2.1 775,072 - DZA65_RS03675 0.82 +0.4 775,147 + DZA65_RS03675 0.87 -0.8 775,148 - DZA65_RS03675 0.87 -1.8 775,156 + DZA65_RS03675 0.88 -0.1 775,175 + DZA65_RS03675 0.89 -1.0 775,175 + DZA65_RS03675 0.89 -1.0 775,175 + DZA65_RS03675 0.89 +0.8 775,176 - DZA65_RS03675 0.89 +0.3 775,178 + DZA65_RS03675 0.90 +1.4 775,178 + DZA65_RS03675 0.90 +0.0 775,179 - DZA65_RS03675 0.90 -1.1 775,179 - DZA65_RS03675 0.90 +0.1 775,179 - DZA65_RS03675 0.90 -0.6 775,267 + -0.6 775,267 + -0.8 775,267 + -0.8 775,268 - +0.6 775,271 + -0.8 775,271 + -1.4 775,272 - -1.4 775,296 + +2.0 775,297 - -1.4 775,317 + +0.9 775,318 - +0.5 775,330 + -1.4 775,331 - +0.0 775,370 - -0.7 775,426 + -0.8 775,506 + -0.2 775,507 - +1.6 775,507 - -0.2 775,507 - -2.3 775,538 - -0.5 775,600 + +0.6 775,600 + -1.3 775,601 - -0.3 775,601 - -0.7 775,701 - DZA65_RS03680 0.10 -1.0 775,772 + DZA65_RS03680 0.15 +0.3 775,772 + DZA65_RS03680 0.15 +0.5 775,772 + DZA65_RS03680 0.15 -0.3 775,772 + DZA65_RS03680 0.15 +0.6 775,773 - DZA65_RS03680 0.15 -0.1 775,773 - DZA65_RS03680 0.15 -1.5 775,773 - DZA65_RS03680 0.15 -0.2 775,814 + DZA65_RS03680 0.17 -1.7 775,815 - DZA65_RS03680 0.17 +0.5 775,972 + DZA65_RS03680 0.27 +0.0 775,972 + DZA65_RS03680 0.27 -1.0 775,973 - DZA65_RS03680 0.27 +0.4 775,973 - DZA65_RS03680 0.27 -1.4 776,086 + DZA65_RS03680 0.34 -0.2 776,087 - DZA65_RS03680 0.34 +0.0 776,136 + DZA65_RS03680 0.37 -0.5 776,136 + DZA65_RS03680 0.37 -0.7 776,137 - DZA65_RS03680 0.37 -0.2 776,137 - DZA65_RS03680 0.37 -1.0 776,197 + DZA65_RS03680 0.40 +1.1 776,198 - DZA65_RS03680 0.41 +1.9 776,201 - DZA65_RS03680 0.41 -0.5 776,201 - DZA65_RS03680 0.41 -1.2 776,201 - DZA65_RS03680 0.41 +0.0 776,201 - DZA65_RS03680 0.41 -0.2 776,226 + DZA65_RS03680 0.42 -0.5 776,227 - DZA65_RS03680 0.42 -0.4 776,288 + DZA65_RS03680 0.46 +0.9 776,288 + DZA65_RS03680 0.46 +0.0 776,289 - DZA65_RS03680 0.46 -0.3
Or see this region's nucleotide sequence