Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS03545 and DZA65_RS03555 are separated by 573 nucleotides DZA65_RS03555 and DZA65_RS03560 overlap by 1 nucleotides DZA65_RS03560 and DZA65_RS03565 are separated by 194 nucleotides DZA65_RS03565 and DZA65_RS03570 overlap by 10 nucleotides
DZA65_RS03545: DZA65_RS03545 - hypothetical protein, at 747,744 to 748,634
_RS03545
DZA65_RS03555: DZA65_RS03555 - hypothetical protein, at 749,208 to 749,480
_RS03555
DZA65_RS03560: DZA65_RS03560 - hypothetical protein, at 749,480 to 749,899
_RS03560
DZA65_RS03565: DZA65_RS03565 - HNH endonuclease, at 750,094 to 750,591
_RS03565
DZA65_RS03570: DZA65_RS03570 - hypothetical protein, at 750,582 to 750,998
_RS03570
Position (kb) 749
750 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 748.487 kb on + strand, within DZA65_RS03545 at 748.488 kb on - strand, within DZA65_RS03545 at 748.501 kb on + strand, within DZA65_RS03545 at 748.501 kb on + strand, within DZA65_RS03545 at 748.502 kb on - strand, within DZA65_RS03545 at 748.502 kb on - strand, within DZA65_RS03545 at 748.502 kb on - strand, within DZA65_RS03545 at 748.505 kb on + strand, within DZA65_RS03545 at 748.506 kb on - strand, within DZA65_RS03545 at 748.525 kb on + strand, within DZA65_RS03545 at 748.525 kb on + strand, within DZA65_RS03545 at 748.526 kb on - strand, within DZA65_RS03545 at 748.537 kb on + strand, within DZA65_RS03545 at 748.537 kb on + strand, within DZA65_RS03545 at 748.537 kb on + strand, within DZA65_RS03545 at 748.538 kb on - strand, within DZA65_RS03545 at 748.538 kb on - strand, within DZA65_RS03545 at 748.579 kb on + strand at 748.612 kb on + strand at 748.612 kb on + strand at 748.612 kb on + strand at 748.612 kb on + strand at 748.613 kb on - strand at 748.613 kb on - strand at 748.632 kb on + strand at 748.632 kb on + strand at 748.632 kb on + strand at 748.633 kb on - strand at 748.633 kb on - strand at 748.633 kb on - strand at 748.643 kb on + strand at 748.643 kb on + strand at 748.643 kb on + strand at 748.644 kb on - strand at 748.644 kb on - strand at 748.644 kb on - strand at 748.644 kb on - strand at 748.678 kb on - strand at 748.678 kb on - strand at 748.678 kb on - strand at 748.678 kb on - strand at 748.678 kb on - strand at 748.735 kb on - strand at 748.746 kb on + strand at 748.746 kb on + strand at 748.746 kb on + strand at 748.747 kb on - strand at 748.761 kb on + strand at 748.762 kb on - strand at 748.776 kb on + strand at 748.792 kb on - strand at 748.837 kb on + strand at 748.837 kb on + strand at 748.837 kb on + strand at 748.837 kb on + strand at 748.837 kb on + strand at 748.837 kb on + strand at 748.837 kb on + strand at 748.837 kb on + strand at 748.837 kb on + strand at 748.837 kb on + strand at 748.837 kb on + strand at 748.838 kb on - strand at 748.838 kb on - strand at 748.869 kb on + strand at 748.869 kb on + strand at 748.879 kb on - strand at 748.879 kb on - strand at 748.936 kb on + strand at 748.936 kb on + strand at 748.936 kb on + strand at 748.936 kb on + strand at 748.936 kb on + strand at 748.936 kb on + strand at 748.936 kb on + strand at 748.936 kb on + strand at 748.936 kb on + strand at 748.936 kb on + strand at 748.936 kb on + strand at 748.936 kb on + strand at 748.936 kb on + strand at 748.936 kb on + strand at 748.936 kb on + strand at 748.937 kb on - strand at 748.937 kb on - strand at 748.937 kb on - strand at 748.937 kb on - strand at 748.937 kb on - strand at 748.937 kb on - strand at 748.937 kb on - strand at 748.937 kb on - strand at 748.937 kb on - strand at 748.937 kb on - strand at 748.937 kb on - strand at 748.940 kb on + strand at 748.940 kb on + strand at 748.940 kb on + strand at 748.941 kb on - strand at 748.941 kb on - strand at 748.941 kb on - strand at 748.941 kb on - strand at 748.941 kb on - strand at 748.941 kb on - strand at 748.941 kb on - strand at 748.959 kb on + strand at 748.966 kb on + strand at 748.985 kb on + strand at 748.985 kb on + strand at 749.018 kb on + strand at 749.018 kb on + strand at 749.018 kb on + strand at 749.019 kb on - strand at 749.051 kb on + strand at 749.054 kb on + strand at 749.055 kb on - strand at 749.055 kb on - strand at 749.055 kb on - strand at 749.082 kb on + strand at 749.083 kb on - strand at 749.083 kb on - strand at 749.083 kb on - strand at 749.083 kb on - strand at 749.083 kb on - strand at 749.111 kb on - strand at 749.111 kb on - strand at 749.111 kb on - strand at 749.145 kb on + strand at 749.145 kb on + strand at 749.145 kb on + strand at 749.179 kb on + strand at 749.179 kb on + strand at 749.179 kb on + strand at 749.179 kb on + strand at 749.179 kb on + strand at 749.179 kb on + strand at 749.180 kb on - strand at 749.180 kb on - strand at 749.180 kb on - strand at 749.180 kb on - strand at 749.180 kb on - strand at 749.181 kb on + strand at 749.181 kb on + strand at 749.193 kb on + strand at 749.193 kb on + strand at 749.193 kb on + strand at 749.193 kb on + strand at 749.194 kb on - strand at 749.194 kb on - strand at 749.194 kb on - strand at 749.195 kb on + strand at 749.195 kb on + strand at 749.233 kb on + strand at 749.233 kb on + strand at 749.233 kb on + strand at 749.233 kb on + strand at 749.233 kb on + strand at 749.233 kb on + strand at 749.233 kb on + strand at 749.234 kb on - strand at 749.234 kb on - strand at 749.234 kb on - strand at 749.234 kb on - strand at 749.274 kb on - strand, within DZA65_RS03555 at 749.321 kb on + strand, within DZA65_RS03555 at 749.321 kb on + strand, within DZA65_RS03555 at 749.322 kb on - strand, within DZA65_RS03555 at 749.359 kb on + strand, within DZA65_RS03555 at 749.360 kb on - strand, within DZA65_RS03555 at 749.363 kb on + strand, within DZA65_RS03555 at 749.364 kb on - strand, within DZA65_RS03555 at 749.364 kb on - strand, within DZA65_RS03555 at 749.364 kb on - strand, within DZA65_RS03555 at 749.441 kb on - strand, within DZA65_RS03555 at 749.486 kb on + strand at 749.486 kb on + strand at 749.487 kb on - strand at 749.505 kb on + strand at 749.506 kb on - strand at 749.509 kb on + strand at 749.509 kb on + strand at 749.510 kb on - strand at 749.510 kb on - strand at 749.517 kb on + strand at 749.517 kb on + strand at 749.518 kb on - strand at 749.518 kb on - strand at 749.518 kb on - strand at 749.566 kb on + strand, within DZA65_RS03560 at 749.597 kb on - strand, within DZA65_RS03560 at 749.597 kb on - strand, within DZA65_RS03560 at 749.602 kb on + strand, within DZA65_RS03560 at 749.602 kb on + strand, within DZA65_RS03560 at 749.625 kb on + strand, within DZA65_RS03560 at 749.626 kb on - strand, within DZA65_RS03560 at 749.635 kb on - strand, within DZA65_RS03560 at 749.637 kb on + strand, within DZA65_RS03560 at 749.637 kb on + strand, within DZA65_RS03560 at 749.637 kb on + strand, within DZA65_RS03560 at 749.699 kb on + strand, within DZA65_RS03560 at 749.718 kb on + strand, within DZA65_RS03560 at 749.718 kb on + strand, within DZA65_RS03560 at 749.771 kb on - strand, within DZA65_RS03560 at 749.897 kb on + strand at 749.923 kb on + strand at 749.932 kb on + strand at 749.933 kb on - strand at 749.933 kb on - strand at 749.952 kb on + strand at 749.964 kb on + strand at 750.003 kb on + strand at 750.044 kb on - strand at 750.050 kb on + strand at 750.259 kb on + strand, within DZA65_RS03565 at 750.274 kb on - strand, within DZA65_RS03565 at 750.276 kb on + strand, within DZA65_RS03565 at 750.277 kb on - strand, within DZA65_RS03565 at 750.277 kb on - strand, within DZA65_RS03565 at 750.278 kb on + strand, within DZA65_RS03565 at 750.278 kb on + strand, within DZA65_RS03565 at 750.278 kb on + strand at 750.318 kb on + strand, within DZA65_RS03565 at 750.319 kb on - strand, within DZA65_RS03565 at 750.340 kb on - strand, within DZA65_RS03565 at 750.348 kb on + strand, within DZA65_RS03565 at 750.372 kb on - strand, within DZA65_RS03565 at 750.424 kb on - strand, within DZA65_RS03565 at 750.442 kb on - strand, within DZA65_RS03565 at 750.455 kb on + strand, within DZA65_RS03565 at 750.466 kb on + strand, within DZA65_RS03565 at 750.589 kb on + strand at 750.602 kb on + strand at 750.603 kb on - strand at 750.701 kb on - strand, within DZA65_RS03570 at 750.704 kb on + strand, within DZA65_RS03570 at 750.802 kb on + strand, within DZA65_RS03570 at 750.802 kb on + strand, within DZA65_RS03570 at 750.867 kb on + strand, within DZA65_RS03570 at 750.868 kb on - strand, within DZA65_RS03570 at 750.871 kb on + strand, within DZA65_RS03570 at 750.872 kb on - strand, within DZA65_RS03570 at 750.874 kb on + strand, within DZA65_RS03570
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 748,487 + DZA65_RS03545 0.83 -0.4 748,488 - DZA65_RS03545 0.84 -1.2 748,501 + DZA65_RS03545 0.85 -0.4 748,501 + DZA65_RS03545 0.85 +0.9 748,502 - DZA65_RS03545 0.85 -0.6 748,502 - DZA65_RS03545 0.85 +0.4 748,502 - DZA65_RS03545 0.85 -0.1 748,505 + DZA65_RS03545 0.85 -0.3 748,506 - DZA65_RS03545 0.86 -1.4 748,525 + DZA65_RS03545 0.88 -2.1 748,525 + DZA65_RS03545 0.88 +0.0 748,526 - DZA65_RS03545 0.88 -1.6 748,537 + DZA65_RS03545 0.89 -1.2 748,537 + DZA65_RS03545 0.89 -1.2 748,537 + DZA65_RS03545 0.89 +0.1 748,538 - DZA65_RS03545 0.89 +0.0 748,538 - DZA65_RS03545 0.89 -1.0 748,579 + -0.8 748,612 + -2.3 748,612 + -1.6 748,612 + +0.0 748,612 + -0.8 748,613 - -0.6 748,613 - -0.1 748,632 + +0.5 748,632 + +0.0 748,632 + -0.4 748,633 - -1.1 748,633 - -0.4 748,633 - -1.8 748,643 + -0.6 748,643 + -0.6 748,643 + +0.0 748,644 - +0.0 748,644 - +0.1 748,644 - -0.7 748,644 - -0.2 748,678 - -0.7 748,678 - -2.0 748,678 - +1.2 748,678 - -1.0 748,678 - +0.2 748,735 - -0.2 748,746 + -1.1 748,746 + -2.2 748,746 + -0.1 748,747 - -0.1 748,761 + -1.6 748,762 - +0.3 748,776 + +0.0 748,792 - +1.9 748,837 + -0.3 748,837 + +0.0 748,837 + -1.2 748,837 + +0.6 748,837 + -0.1 748,837 + -0.4 748,837 + +1.6 748,837 + +0.4 748,837 + -0.5 748,837 + +0.3 748,837 + +0.6 748,838 - -0.1 748,838 - -0.6 748,869 + -2.2 748,869 + -2.2 748,879 - +0.2 748,879 - -0.8 748,936 + +0.0 748,936 + +0.4 748,936 + +1.3 748,936 + -1.6 748,936 + +0.0 748,936 + -0.7 748,936 + -1.0 748,936 + -0.4 748,936 + -2.9 748,936 + -0.4 748,936 + +0.6 748,936 + -0.2 748,936 + -0.2 748,936 + +0.6 748,936 + -0.2 748,937 - +0.4 748,937 - -0.6 748,937 - +0.3 748,937 - +0.5 748,937 - +0.3 748,937 - +0.0 748,937 - +0.2 748,937 - -0.8 748,937 - -0.4 748,937 - -1.6 748,937 - +1.0 748,940 + +0.0 748,940 + +0.0 748,940 + -1.8 748,941 - -0.2 748,941 - -0.6 748,941 - -0.6 748,941 - -0.8 748,941 - -0.4 748,941 - +1.6 748,941 - -0.0 748,959 + +0.0 748,966 + +0.0 748,985 + -0.2 748,985 + +0.4 749,018 + -0.6 749,018 + -0.8 749,018 + -0.7 749,019 - +0.6 749,051 + -1.2 749,054 + -0.7 749,055 - +2.6 749,055 - +0.5 749,055 - -1.7 749,082 + -0.4 749,083 - +0.0 749,083 - -1.6 749,083 - +0.1 749,083 - -0.1 749,083 - +1.3 749,111 - +0.9 749,111 - -0.8 749,111 - +0.9 749,145 + +0.2 749,145 + -0.9 749,145 + -0.1 749,179 + +2.0 749,179 + -1.2 749,179 + -2.0 749,179 + -0.1 749,179 + +0.3 749,179 + +0.0 749,180 - -1.6 749,180 - +1.6 749,180 - -0.2 749,180 - -1.6 749,180 - -0.6 749,181 + +0.4 749,181 + +0.3 749,193 + -1.2 749,193 + -0.5 749,193 + +0.9 749,193 + -1.1 749,194 - -0.3 749,194 - +0.6 749,194 - +1.1 749,195 + +1.1 749,195 + -0.7 749,233 + +0.0 749,233 + -0.9 749,233 + +0.5 749,233 + -0.0 749,233 + -2.8 749,233 + -0.7 749,233 + -2.2 749,234 - -0.1 749,234 - -0.1 749,234 - +0.0 749,234 - -0.1 749,274 - DZA65_RS03555 0.24 -1.7 749,321 + DZA65_RS03555 0.41 +0.4 749,321 + DZA65_RS03555 0.41 -1.7 749,322 - DZA65_RS03555 0.42 -0.4 749,359 + DZA65_RS03555 0.55 -0.1 749,360 - DZA65_RS03555 0.56 +0.3 749,363 + DZA65_RS03555 0.57 -1.4 749,364 - DZA65_RS03555 0.57 -0.2 749,364 - DZA65_RS03555 0.57 -1.0 749,364 - DZA65_RS03555 0.57 +0.1 749,441 - DZA65_RS03555 0.85 +0.1 749,486 + -0.5 749,486 + -0.2 749,487 - +1.6 749,505 + -0.6 749,506 - -0.3 749,509 + +2.0 749,509 + -1.0 749,510 - +0.6 749,510 - +0.6 749,517 + +1.6 749,517 + -0.4 749,518 - +2.0 749,518 - -0.2 749,518 - -0.1 749,566 + DZA65_RS03560 0.20 +0.4 749,597 - DZA65_RS03560 0.28 -0.7 749,597 - DZA65_RS03560 0.28 -1.5 749,602 + DZA65_RS03560 0.29 -0.5 749,602 + DZA65_RS03560 0.29 +0.0 749,625 + DZA65_RS03560 0.35 -0.9 749,626 - DZA65_RS03560 0.35 -0.7 749,635 - DZA65_RS03560 0.37 -0.4 749,637 + DZA65_RS03560 0.37 -1.8 749,637 + DZA65_RS03560 0.37 +0.4 749,637 + DZA65_RS03560 0.37 -0.6 749,699 + DZA65_RS03560 0.52 -1.2 749,718 + DZA65_RS03560 0.57 +1.6 749,718 + DZA65_RS03560 0.57 -1.4 749,771 - DZA65_RS03560 0.69 -0.4 749,897 + -1.3 749,923 + -0.2 749,932 + -0.4 749,933 - -0.3 749,933 - +1.0 749,952 + -0.8 749,964 + -0.4 750,003 + -1.0 750,044 - +0.2 750,050 + +0.6 750,259 + DZA65_RS03565 0.33 -1.2 750,274 - DZA65_RS03565 0.36 -0.5 750,276 + DZA65_RS03565 0.37 -0.2 750,277 - DZA65_RS03565 0.37 +0.9 750,277 - DZA65_RS03565 0.37 -1.2 750,278 + DZA65_RS03565 0.37 +0.5 750,278 + DZA65_RS03565 0.37 -1.1 750,278 + -1.2 750,318 + DZA65_RS03565 0.45 +0.4 750,319 - DZA65_RS03565 0.45 +1.0 750,340 - DZA65_RS03565 0.49 -0.7 750,348 + DZA65_RS03565 0.51 +0.3 750,372 - DZA65_RS03565 0.56 -0.5 750,424 - DZA65_RS03565 0.66 -2.2 750,442 - DZA65_RS03565 0.70 -0.4 750,455 + DZA65_RS03565 0.72 +1.6 750,466 + DZA65_RS03565 0.75 +1.4 750,589 + +1.6 750,602 + -0.1 750,603 - +0.0 750,701 - DZA65_RS03570 0.29 +1.3 750,704 + DZA65_RS03570 0.29 -0.4 750,802 + DZA65_RS03570 0.53 +0.6 750,802 + DZA65_RS03570 0.53 -0.7 750,867 + DZA65_RS03570 0.68 -2.1 750,868 - DZA65_RS03570 0.69 -0.2 750,871 + DZA65_RS03570 0.69 +0.6 750,872 - DZA65_RS03570 0.70 -0.7 750,874 + DZA65_RS03570 0.70 -0.7
Or see this region's nucleotide sequence