Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS03335 and DZA65_RS03340 are separated by 2 nucleotides DZA65_RS03340 and DZA65_RS03345 are separated by 11 nucleotides DZA65_RS03345 and DZA65_RS03355 are separated by 466 nucleotides
DZA65_RS03335: DZA65_RS03335 - YggS family pyridoxal phosphate-dependent enzyme, at 706,563 to 707,222
_RS03335
DZA65_RS03340: DZA65_RS03340 - adenine phosphoribosyltransferase, at 707,225 to 707,785
_RS03340
DZA65_RS03345: DZA65_RS03345 - cysteine synthase family protein, at 707,797 to 708,735
_RS03345
DZA65_RS03355: DZA65_RS03355 - hypothetical protein, at 709,202 to 709,573
_RS03355
Position (kb) 707
708
709 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 706.913 kb on + strand, within DZA65_RS03335 at 706.913 kb on + strand, within DZA65_RS03335 at 706.914 kb on - strand, within DZA65_RS03335 at 706.917 kb on + strand, within DZA65_RS03335 at 706.917 kb on + strand, within DZA65_RS03335 at 706.917 kb on + strand, within DZA65_RS03335 at 706.936 kb on - strand, within DZA65_RS03335 at 707.061 kb on - strand, within DZA65_RS03335 at 707.189 kb on - strand at 707.189 kb on - strand at 707.207 kb on + strand at 707.276 kb on + strand at 707.276 kb on + strand at 707.346 kb on - strand, within DZA65_RS03340 at 707.385 kb on - strand, within DZA65_RS03340 at 707.431 kb on + strand, within DZA65_RS03340 at 707.436 kb on - strand, within DZA65_RS03340 at 707.467 kb on - strand, within DZA65_RS03340 at 707.518 kb on - strand, within DZA65_RS03340 at 707.530 kb on + strand, within DZA65_RS03340 at 707.532 kb on + strand, within DZA65_RS03340 at 707.551 kb on + strand, within DZA65_RS03340 at 707.555 kb on + strand, within DZA65_RS03340 at 707.654 kb on + strand, within DZA65_RS03340 at 707.655 kb on - strand at 707.666 kb on + strand, within DZA65_RS03340 at 707.667 kb on - strand, within DZA65_RS03340 at 707.691 kb on - strand, within DZA65_RS03340 at 707.750 kb on + strand at 707.840 kb on + strand at 707.840 kb on + strand at 707.893 kb on - strand, within DZA65_RS03345 at 708.004 kb on + strand, within DZA65_RS03345 at 708.071 kb on - strand, within DZA65_RS03345 at 708.252 kb on + strand, within DZA65_RS03345 at 708.348 kb on + strand, within DZA65_RS03345 at 708.349 kb on - strand, within DZA65_RS03345 at 708.608 kb on - strand, within DZA65_RS03345 at 708.619 kb on - strand, within DZA65_RS03345 at 708.700 kb on + strand at 708.703 kb on + strand at 708.704 kb on - strand at 708.718 kb on + strand at 708.746 kb on + strand at 708.752 kb on - strand at 708.767 kb on + strand at 708.769 kb on + strand at 708.769 kb on + strand at 708.770 kb on - strand at 708.785 kb on + strand at 708.885 kb on - strand at 708.898 kb on + strand at 708.898 kb on + strand at 708.901 kb on + strand at 708.902 kb on - strand at 708.904 kb on - strand at 708.906 kb on + strand at 708.907 kb on - strand at 708.907 kb on - strand at 708.908 kb on + strand at 708.909 kb on - strand at 708.973 kb on + strand at 708.973 kb on + strand at 708.973 kb on + strand at 708.973 kb on + strand at 708.973 kb on + strand at 708.973 kb on + strand at 708.973 kb on + strand at 708.973 kb on + strand at 708.973 kb on + strand at 708.973 kb on + strand at 708.973 kb on + strand at 708.973 kb on + strand at 708.973 kb on + strand at 708.973 kb on + strand at 708.973 kb on + strand at 708.974 kb on - strand at 708.974 kb on - strand at 708.974 kb on - strand at 708.974 kb on - strand at 708.974 kb on - strand at 708.974 kb on - strand at 708.974 kb on - strand at 708.974 kb on - strand at 709.029 kb on + strand at 709.030 kb on - strand at 709.038 kb on + strand at 709.038 kb on + strand at 709.137 kb on - strand at 709.245 kb on - strand, within DZA65_RS03355 at 709.284 kb on + strand, within DZA65_RS03355 at 709.284 kb on + strand, within DZA65_RS03355 at 709.285 kb on - strand, within DZA65_RS03355 at 709.491 kb on + strand, within DZA65_RS03355 at 709.537 kb on + strand at 709.537 kb on + strand at 709.538 kb on - strand at 709.538 kb on - strand at 709.542 kb on - strand at 709.574 kb on - strand at 709.588 kb on + strand at 709.588 kb on + strand at 709.588 kb on + strand at 709.589 kb on - strand at 709.667 kb on - strand at 709.719 kb on + strand at 709.719 kb on + strand at 709.720 kb on - strand at 709.720 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 706,913 + DZA65_RS03335 0.53 +0.3 706,913 + DZA65_RS03335 0.53 -0.8 706,914 - DZA65_RS03335 0.53 +0.2 706,917 + DZA65_RS03335 0.54 -1.2 706,917 + DZA65_RS03335 0.54 +1.2 706,917 + DZA65_RS03335 0.54 +0.0 706,936 - DZA65_RS03335 0.57 -1.4 707,061 - DZA65_RS03335 0.75 +0.6 707,189 - +0.3 707,189 - -0.1 707,207 + +0.9 707,276 + +0.2 707,276 + +0.3 707,346 - DZA65_RS03340 0.22 -0.8 707,385 - DZA65_RS03340 0.29 -0.2 707,431 + DZA65_RS03340 0.37 -1.4 707,436 - DZA65_RS03340 0.38 +0.6 707,467 - DZA65_RS03340 0.43 -0.7 707,518 - DZA65_RS03340 0.52 -2.0 707,530 + DZA65_RS03340 0.54 -2.3 707,532 + DZA65_RS03340 0.55 -0.4 707,551 + DZA65_RS03340 0.58 +0.3 707,555 + DZA65_RS03340 0.59 -0.6 707,654 + DZA65_RS03340 0.76 -0.2 707,655 - +0.0 707,666 + DZA65_RS03340 0.79 +0.0 707,667 - DZA65_RS03340 0.79 -1.6 707,691 - DZA65_RS03340 0.83 +0.6 707,750 + +0.8 707,840 + +0.0 707,840 + -1.2 707,893 - DZA65_RS03345 0.10 -2.1 708,004 + DZA65_RS03345 0.22 -1.4 708,071 - DZA65_RS03345 0.29 +0.2 708,252 + DZA65_RS03345 0.48 -0.2 708,348 + DZA65_RS03345 0.59 +0.4 708,349 - DZA65_RS03345 0.59 +0.9 708,608 - DZA65_RS03345 0.86 +1.6 708,619 - DZA65_RS03345 0.88 +2.2 708,700 + -0.2 708,703 + -1.4 708,704 - +0.3 708,718 + -0.9 708,746 + -1.2 708,752 - -0.7 708,767 + -0.5 708,769 + -1.0 708,769 + -1.4 708,770 - +0.4 708,785 + -2.0 708,885 - +2.6 708,898 + -0.8 708,898 + -1.8 708,901 + -0.1 708,902 - +2.2 708,904 - +0.6 708,906 + -0.6 708,907 - -0.1 708,907 - -1.0 708,908 + +0.2 708,909 - -0.6 708,973 + -0.8 708,973 + -0.1 708,973 + +2.2 708,973 + +0.0 708,973 + -0.8 708,973 + -0.6 708,973 + -0.4 708,973 + -1.4 708,973 + +0.3 708,973 + -2.2 708,973 + -0.4 708,973 + +0.0 708,973 + +0.6 708,973 + -0.2 708,973 + +0.2 708,974 - +0.8 708,974 - +0.0 708,974 - -0.4 708,974 - +0.0 708,974 - +0.9 708,974 - +0.6 708,974 - +0.6 708,974 - -0.2 709,029 + +0.3 709,030 - -0.6 709,038 + -2.0 709,038 + +1.0 709,137 - -0.5 709,245 - DZA65_RS03355 0.12 +0.2 709,284 + DZA65_RS03355 0.22 +0.0 709,284 + DZA65_RS03355 0.22 +1.4 709,285 - DZA65_RS03355 0.22 -0.4 709,491 + DZA65_RS03355 0.78 -0.7 709,537 + -0.7 709,537 + +1.2 709,538 - -0.6 709,538 - -0.6 709,542 - +0.2 709,574 - -0.5 709,588 + -0.3 709,588 + -1.1 709,588 + +0.3 709,589 - -2.8 709,667 - -2.1 709,719 + -1.4 709,719 + +0.3 709,720 - -0.4 709,720 - +0.6
Or see this region's nucleotide sequence