Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS03330 and DZA65_RS03335 overlap by 1 nucleotides DZA65_RS03335 and DZA65_RS03340 are separated by 2 nucleotides DZA65_RS03340 and DZA65_RS03345 are separated by 11 nucleotides
DZA65_RS03330: DZA65_RS03330 - EamA family transporter, at 705,631 to 706,563
_RS03330
DZA65_RS03335: DZA65_RS03335 - YggS family pyridoxal phosphate-dependent enzyme, at 706,563 to 707,222
_RS03335
DZA65_RS03340: DZA65_RS03340 - adenine phosphoribosyltransferase, at 707,225 to 707,785
_RS03340
DZA65_RS03345: DZA65_RS03345 - cysteine synthase family protein, at 707,797 to 708,735
_RS03345
Position (kb) 707
708 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 706.226 kb on - strand, within DZA65_RS03330 at 706.226 kb on - strand, within DZA65_RS03330 at 706.226 kb on - strand, within DZA65_RS03330 at 706.231 kb on + strand, within DZA65_RS03330 at 706.279 kb on + strand, within DZA65_RS03330 at 706.298 kb on - strand, within DZA65_RS03330 at 706.345 kb on + strand, within DZA65_RS03330 at 706.346 kb on - strand, within DZA65_RS03330 at 706.392 kb on + strand, within DZA65_RS03330 at 706.415 kb on - strand, within DZA65_RS03330 at 706.507 kb on - strand at 706.716 kb on + strand, within DZA65_RS03335 at 706.731 kb on - strand, within DZA65_RS03335 at 706.739 kb on + strand, within DZA65_RS03335 at 706.740 kb on - strand, within DZA65_RS03335 at 706.761 kb on + strand, within DZA65_RS03335 at 706.913 kb on + strand, within DZA65_RS03335 at 706.913 kb on + strand, within DZA65_RS03335 at 706.914 kb on - strand, within DZA65_RS03335 at 706.917 kb on + strand, within DZA65_RS03335 at 706.917 kb on + strand, within DZA65_RS03335 at 706.917 kb on + strand, within DZA65_RS03335 at 706.936 kb on - strand, within DZA65_RS03335 at 707.061 kb on - strand, within DZA65_RS03335 at 707.189 kb on - strand at 707.189 kb on - strand at 707.207 kb on + strand at 707.276 kb on + strand at 707.276 kb on + strand at 707.346 kb on - strand, within DZA65_RS03340 at 707.385 kb on - strand, within DZA65_RS03340 at 707.431 kb on + strand, within DZA65_RS03340 at 707.436 kb on - strand, within DZA65_RS03340 at 707.467 kb on - strand, within DZA65_RS03340 at 707.518 kb on - strand, within DZA65_RS03340 at 707.530 kb on + strand, within DZA65_RS03340 at 707.532 kb on + strand, within DZA65_RS03340 at 707.551 kb on + strand, within DZA65_RS03340 at 707.555 kb on + strand, within DZA65_RS03340 at 707.654 kb on + strand, within DZA65_RS03340 at 707.655 kb on - strand at 707.666 kb on + strand, within DZA65_RS03340 at 707.667 kb on - strand, within DZA65_RS03340 at 707.691 kb on - strand, within DZA65_RS03340 at 707.750 kb on + strand at 707.840 kb on + strand at 707.840 kb on + strand at 707.893 kb on - strand, within DZA65_RS03345 at 708.004 kb on + strand, within DZA65_RS03345 at 708.071 kb on - strand, within DZA65_RS03345 at 708.252 kb on + strand, within DZA65_RS03345 at 708.348 kb on + strand, within DZA65_RS03345 at 708.349 kb on - strand, within DZA65_RS03345 at 708.608 kb on - strand, within DZA65_RS03345 at 708.619 kb on - strand, within DZA65_RS03345 at 708.700 kb on + strand at 708.703 kb on + strand at 708.704 kb on - strand at 708.718 kb on + strand at 708.746 kb on + strand at 708.752 kb on - strand at 708.767 kb on + strand at 708.769 kb on + strand at 708.769 kb on + strand at 708.770 kb on - strand at 708.785 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 706,226 - DZA65_RS03330 0.64 -0.7 706,226 - DZA65_RS03330 0.64 +2.4 706,226 - DZA65_RS03330 0.64 -0.1 706,231 + DZA65_RS03330 0.64 +0.9 706,279 + DZA65_RS03330 0.69 -0.5 706,298 - DZA65_RS03330 0.71 -0.4 706,345 + DZA65_RS03330 0.77 -0.7 706,346 - DZA65_RS03330 0.77 -0.4 706,392 + DZA65_RS03330 0.82 -2.9 706,415 - DZA65_RS03330 0.84 -1.2 706,507 - +0.4 706,716 + DZA65_RS03335 0.23 +0.3 706,731 - DZA65_RS03335 0.25 -0.8 706,739 + DZA65_RS03335 0.27 -2.5 706,740 - DZA65_RS03335 0.27 +0.3 706,761 + DZA65_RS03335 0.30 +1.0 706,913 + DZA65_RS03335 0.53 +0.3 706,913 + DZA65_RS03335 0.53 -0.8 706,914 - DZA65_RS03335 0.53 +0.2 706,917 + DZA65_RS03335 0.54 -1.2 706,917 + DZA65_RS03335 0.54 +1.2 706,917 + DZA65_RS03335 0.54 +0.0 706,936 - DZA65_RS03335 0.57 -1.4 707,061 - DZA65_RS03335 0.75 +0.6 707,189 - +0.3 707,189 - -0.1 707,207 + +0.9 707,276 + +0.2 707,276 + +0.3 707,346 - DZA65_RS03340 0.22 -0.8 707,385 - DZA65_RS03340 0.29 -0.2 707,431 + DZA65_RS03340 0.37 -1.4 707,436 - DZA65_RS03340 0.38 +0.6 707,467 - DZA65_RS03340 0.43 -0.7 707,518 - DZA65_RS03340 0.52 -2.0 707,530 + DZA65_RS03340 0.54 -2.3 707,532 + DZA65_RS03340 0.55 -0.4 707,551 + DZA65_RS03340 0.58 +0.3 707,555 + DZA65_RS03340 0.59 -0.6 707,654 + DZA65_RS03340 0.76 -0.2 707,655 - +0.0 707,666 + DZA65_RS03340 0.79 +0.0 707,667 - DZA65_RS03340 0.79 -1.6 707,691 - DZA65_RS03340 0.83 +0.6 707,750 + +0.8 707,840 + +0.0 707,840 + -1.2 707,893 - DZA65_RS03345 0.10 -2.1 708,004 + DZA65_RS03345 0.22 -1.4 708,071 - DZA65_RS03345 0.29 +0.2 708,252 + DZA65_RS03345 0.48 -0.2 708,348 + DZA65_RS03345 0.59 +0.4 708,349 - DZA65_RS03345 0.59 +0.9 708,608 - DZA65_RS03345 0.86 +1.6 708,619 - DZA65_RS03345 0.88 +2.2 708,700 + -0.2 708,703 + -1.4 708,704 - +0.3 708,718 + -0.9 708,746 + -1.2 708,752 - -0.7 708,767 + -0.5 708,769 + -1.0 708,769 + -1.4 708,770 - +0.4 708,785 + -2.0
Or see this region's nucleotide sequence