Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS03245 and DZA65_RS03250 are separated by 108 nucleotides DZA65_RS03250 and DZA65_RS03255 are separated by 250 nucleotides DZA65_RS03255 and DZA65_RS03260 are separated by 127 nucleotides
DZA65_RS03245: DZA65_RS03245 - tRNA pseudouridine(55) synthase TruB, at 688,020 to 688,976
_RS03245
DZA65_RS03250: DZA65_RS03250 - 30S ribosomal protein S15, at 689,085 to 689,354
_RS03250
DZA65_RS03255: DZA65_RS03255 - polyribonucleotide nucleotidyltransferase, at 689,605 to 691,725
_RS03255
DZA65_RS03260: DZA65_RS03260 - lipoprotein NlpI, at 691,853 to 692,737
_RS03260
Position (kb) 689
690
691
692 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 688.614 kb on + strand, within DZA65_RS03245 at 688.615 kb on - strand, within DZA65_RS03245 at 688.615 kb on - strand, within DZA65_RS03245 at 688.641 kb on + strand, within DZA65_RS03245 at 688.641 kb on + strand, within DZA65_RS03245 at 688.641 kb on + strand, within DZA65_RS03245 at 688.641 kb on + strand, within DZA65_RS03245 at 688.642 kb on - strand, within DZA65_RS03245 at 688.782 kb on - strand, within DZA65_RS03245 at 688.816 kb on + strand, within DZA65_RS03245 at 688.816 kb on + strand, within DZA65_RS03245 at 688.816 kb on + strand, within DZA65_RS03245 at 688.816 kb on + strand, within DZA65_RS03245 at 688.817 kb on - strand, within DZA65_RS03245 at 688.817 kb on - strand, within DZA65_RS03245 at 688.841 kb on + strand, within DZA65_RS03245 at 688.842 kb on - strand, within DZA65_RS03245 at 688.945 kb on + strand at 688.946 kb on - strand at 689.059 kb on + strand at 689.429 kb on + strand at 689.429 kb on + strand at 689.429 kb on + strand at 689.429 kb on + strand at 689.429 kb on + strand at 689.429 kb on + strand at 689.440 kb on + strand at 689.440 kb on + strand at 689.440 kb on + strand at 689.440 kb on + strand at 689.444 kb on + strand at 689.444 kb on + strand at 689.444 kb on + strand at 689.444 kb on + strand at 689.444 kb on + strand at 689.454 kb on + strand at 689.457 kb on + strand at 689.488 kb on + strand at 689.531 kb on + strand at 689.531 kb on + strand at 689.531 kb on + strand at 689.531 kb on + strand at 689.532 kb on - strand at 689.550 kb on + strand at 689.564 kb on + strand at 689.573 kb on + strand at 689.573 kb on + strand at 689.602 kb on - strand at 689.647 kb on - strand at 689.791 kb on + strand at 690.921 kb on + strand, within DZA65_RS03255 at 690.922 kb on - strand, within DZA65_RS03255 at 691.028 kb on - strand, within DZA65_RS03255 at 691.228 kb on - strand, within DZA65_RS03255 at 691.670 kb on + strand at 691.671 kb on - strand at 691.723 kb on + strand at 691.724 kb on - strand at 691.724 kb on - strand at 691.724 kb on - strand at 691.724 kb on - strand at 691.724 kb on - strand at 691.724 kb on - strand at 691.726 kb on + strand at 691.752 kb on + strand at 691.753 kb on - strand at 691.774 kb on + strand at 691.774 kb on + strand at 691.774 kb on + strand at 691.774 kb on + strand at 691.774 kb on + strand at 691.774 kb on + strand at 691.774 kb on + strand at 691.774 kb on + strand at 691.774 kb on + strand at 691.775 kb on - strand at 691.775 kb on - strand at 691.775 kb on - strand at 691.775 kb on - strand at 691.777 kb on + strand at 691.777 kb on + strand at 691.777 kb on + strand at 691.777 kb on + strand at 691.777 kb on + strand at 691.778 kb on - strand at 691.778 kb on - strand at 691.779 kb on + strand at 691.780 kb on - strand at 691.780 kb on - strand at 691.780 kb on - strand at 691.796 kb on + strand at 691.797 kb on - strand at 691.877 kb on + strand at 691.877 kb on + strand at 691.878 kb on - strand at 691.878 kb on - strand at 691.878 kb on - strand at 691.894 kb on + strand at 691.894 kb on + strand at 691.895 kb on - strand at 691.895 kb on - strand at 692.021 kb on - strand at 692.046 kb on + strand, within DZA65_RS03260 at 692.046 kb on + strand, within DZA65_RS03260 at 692.047 kb on - strand, within DZA65_RS03260 at 692.047 kb on - strand, within DZA65_RS03260 at 692.048 kb on + strand, within DZA65_RS03260 at 692.049 kb on - strand, within DZA65_RS03260 at 692.049 kb on - strand, within DZA65_RS03260 at 692.066 kb on + strand, within DZA65_RS03260 at 692.066 kb on + strand, within DZA65_RS03260 at 692.066 kb on + strand, within DZA65_RS03260 at 692.066 kb on + strand, within DZA65_RS03260 at 692.066 kb on + strand, within DZA65_RS03260 at 692.135 kb on - strand, within DZA65_RS03260 at 692.153 kb on + strand, within DZA65_RS03260 at 692.165 kb on + strand, within DZA65_RS03260 at 692.244 kb on - strand, within DZA65_RS03260 at 692.364 kb on - strand, within DZA65_RS03260 at 692.421 kb on - strand at 692.506 kb on + strand, within DZA65_RS03260 at 692.506 kb on + strand, within DZA65_RS03260 at 692.508 kb on + strand, within DZA65_RS03260 at 692.509 kb on - strand, within DZA65_RS03260 at 692.509 kb on - strand, within DZA65_RS03260 at 692.521 kb on + strand, within DZA65_RS03260 at 692.567 kb on + strand, within DZA65_RS03260 at 692.567 kb on + strand, within DZA65_RS03260 at 692.567 kb on + strand, within DZA65_RS03260 at 692.567 kb on + strand, within DZA65_RS03260 at 692.568 kb on - strand, within DZA65_RS03260 at 692.582 kb on + strand, within DZA65_RS03260 at 692.582 kb on + strand at 692.583 kb on - strand, within DZA65_RS03260 at 692.586 kb on + strand, within DZA65_RS03260 at 692.587 kb on - strand, within DZA65_RS03260 at 692.587 kb on - strand, within DZA65_RS03260 at 692.715 kb on + strand at 692.715 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 688,614 + DZA65_RS03245 0.62 -0.4 688,615 - DZA65_RS03245 0.62 -0.6 688,615 - DZA65_RS03245 0.62 -2.0 688,641 + DZA65_RS03245 0.65 -1.3 688,641 + DZA65_RS03245 0.65 -2.3 688,641 + DZA65_RS03245 0.65 +1.6 688,641 + DZA65_RS03245 0.65 -1.4 688,642 - DZA65_RS03245 0.65 +0.0 688,782 - DZA65_RS03245 0.80 +0.2 688,816 + DZA65_RS03245 0.83 +0.6 688,816 + DZA65_RS03245 0.83 +0.0 688,816 + DZA65_RS03245 0.83 +1.2 688,816 + DZA65_RS03245 0.83 -1.7 688,817 - DZA65_RS03245 0.83 -2.5 688,817 - DZA65_RS03245 0.83 -1.4 688,841 + DZA65_RS03245 0.86 +0.4 688,842 - DZA65_RS03245 0.86 -1.2 688,945 + -1.8 688,946 - -0.3 689,059 + +0.8 689,429 + -0.2 689,429 + +1.6 689,429 + -1.7 689,429 + -1.5 689,429 + -0.1 689,429 + -1.9 689,440 + -1.3 689,440 + +0.0 689,440 + +0.4 689,440 + +0.5 689,444 + -1.0 689,444 + -1.1 689,444 + +0.6 689,444 + -0.9 689,444 + +1.6 689,454 + +1.0 689,457 + -0.5 689,488 + -0.3 689,531 + -0.3 689,531 + -0.2 689,531 + -1.4 689,531 + -2.1 689,532 - +1.3 689,550 + -0.6 689,564 + +1.3 689,573 + -0.4 689,573 + +0.8 689,602 - -0.5 689,647 - -1.4 689,791 + +2.2 690,921 + DZA65_RS03255 0.62 +0.0 690,922 - DZA65_RS03255 0.62 -0.4 691,028 - DZA65_RS03255 0.67 -1.8 691,228 - DZA65_RS03255 0.77 -1.3 691,670 + +0.0 691,671 - +0.0 691,723 + -0.9 691,724 - -1.0 691,724 - -0.4 691,724 - +0.4 691,724 - -1.0 691,724 - -1.0 691,724 - +0.3 691,726 + +0.5 691,752 + +1.2 691,753 - -1.5 691,774 + +0.6 691,774 + -1.2 691,774 + -0.7 691,774 + +0.1 691,774 + -0.1 691,774 + -1.4 691,774 + -0.5 691,774 + -0.4 691,774 + +0.8 691,775 - +0.0 691,775 - -1.2 691,775 - +0.6 691,775 - -1.2 691,777 + -1.0 691,777 + -1.1 691,777 + -0.6 691,777 + -1.3 691,777 + +0.4 691,778 - +0.0 691,778 - -0.7 691,779 + -0.4 691,780 - -1.5 691,780 - +0.9 691,780 - -0.4 691,796 + -2.0 691,797 - +0.3 691,877 + +0.3 691,877 + -0.2 691,878 - -2.5 691,878 - +0.0 691,878 - -1.0 691,894 + +0.6 691,894 + -0.2 691,895 - -1.2 691,895 - -1.9 692,021 - +0.0 692,046 + DZA65_RS03260 0.22 -1.4 692,046 + DZA65_RS03260 0.22 -0.4 692,047 - DZA65_RS03260 0.22 -0.4 692,047 - DZA65_RS03260 0.22 -0.7 692,048 + DZA65_RS03260 0.22 -1.5 692,049 - DZA65_RS03260 0.22 -0.9 692,049 - DZA65_RS03260 0.22 -0.5 692,066 + DZA65_RS03260 0.24 +0.4 692,066 + DZA65_RS03260 0.24 -0.4 692,066 + DZA65_RS03260 0.24 -1.2 692,066 + DZA65_RS03260 0.24 -0.7 692,066 + DZA65_RS03260 0.24 +0.3 692,135 - DZA65_RS03260 0.32 +0.4 692,153 + DZA65_RS03260 0.34 -2.3 692,165 + DZA65_RS03260 0.35 -0.2 692,244 - DZA65_RS03260 0.44 -1.0 692,364 - DZA65_RS03260 0.58 -0.7 692,421 - -0.7 692,506 + DZA65_RS03260 0.74 -0.8 692,506 + DZA65_RS03260 0.74 -0.7 692,508 + DZA65_RS03260 0.74 -2.9 692,509 - DZA65_RS03260 0.74 +1.6 692,509 - DZA65_RS03260 0.74 -0.4 692,521 + DZA65_RS03260 0.75 -0.4 692,567 + DZA65_RS03260 0.81 +0.0 692,567 + DZA65_RS03260 0.81 -1.5 692,567 + DZA65_RS03260 0.81 -1.4 692,567 + DZA65_RS03260 0.81 +0.6 692,568 - DZA65_RS03260 0.81 -1.2 692,582 + DZA65_RS03260 0.82 -0.5 692,582 + -0.2 692,583 - DZA65_RS03260 0.82 +0.0 692,586 + DZA65_RS03260 0.83 -0.4 692,587 - DZA65_RS03260 0.83 +1.0 692,587 - DZA65_RS03260 0.83 -0.4 692,715 + -0.4 692,715 + +0.0
Or see this region's nucleotide sequence