Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS03065 and DZA65_RS03080 are separated by 888 nucleotides DZA65_RS03080 and DZA65_RS03085 are separated by 64 nucleotides DZA65_RS03085 and DZA65_RS03090 overlap by 4 nucleotides DZA65_RS03090 and DZA65_RS03095 are separated by 158 nucleotides
DZA65_RS03065: DZA65_RS03065 - SDR family oxidoreductase, at 656,034 to 656,897
_RS03065
DZA65_RS03080: DZA65_RS03080 - site-specific integrase, at 657,786 to 658,238
_RS03080
DZA65_RS03085: DZA65_RS03085 - cell division protein Fic, at 658,303 to 658,857
_RS03085
DZA65_RS03090: DZA65_RS03090 - hypothetical protein, at 658,854 to 659,012
_RS03090
DZA65_RS03095: DZA65_RS03095 - IS3 family transposase, at 659,171 to 660,279
_RS03095
Position (kb) 657
658
659 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 656.793 kb on - strand, within DZA65_RS03065 at 656.857 kb on + strand at 656.857 kb on + strand at 656.858 kb on - strand at 656.862 kb on - strand at 656.895 kb on + strand at 656.895 kb on + strand at 656.896 kb on - strand at 656.896 kb on - strand at 656.896 kb on - strand at 656.912 kb on + strand at 656.912 kb on + strand at 656.912 kb on + strand at 656.912 kb on + strand at 656.912 kb on + strand at 656.913 kb on - strand at 656.913 kb on - strand at 656.913 kb on - strand at 656.915 kb on + strand at 656.915 kb on + strand at 656.915 kb on + strand at 656.915 kb on + strand at 656.916 kb on - strand at 656.916 kb on - strand at 656.935 kb on + strand at 656.935 kb on + strand at 656.935 kb on + strand at 656.936 kb on - strand at 656.944 kb on + strand at 656.944 kb on + strand at 656.948 kb on + strand at 656.948 kb on + strand at 656.948 kb on + strand at 656.948 kb on + strand at 656.949 kb on - strand at 656.949 kb on - strand at 656.949 kb on - strand at 656.949 kb on - strand at 656.949 kb on - strand at 656.962 kb on - strand at 656.962 kb on - strand at 656.962 kb on - strand at 656.980 kb on - strand at 657.040 kb on + strand at 657.041 kb on - strand at 657.045 kb on + strand at 657.045 kb on + strand at 657.045 kb on + strand at 657.046 kb on - strand at 657.046 kb on - strand at 657.046 kb on - strand at 657.046 kb on - strand at 657.055 kb on + strand at 657.056 kb on - strand at 657.056 kb on - strand at 657.056 kb on - strand at 657.056 kb on - strand at 657.059 kb on + strand at 657.059 kb on + strand at 657.059 kb on + strand at 657.059 kb on + strand at 657.059 kb on + strand at 657.059 kb on + strand at 657.059 kb on + strand at 657.060 kb on - strand at 657.060 kb on - strand at 657.076 kb on + strand at 657.076 kb on + strand at 657.076 kb on + strand at 657.076 kb on + strand at 657.077 kb on - strand at 657.077 kb on - strand at 657.077 kb on - strand at 657.077 kb on - strand at 657.077 kb on - strand at 657.077 kb on - strand at 657.077 kb on - strand at 657.077 kb on - strand at 657.077 kb on - strand at 657.077 kb on - strand at 657.077 kb on - strand at 657.097 kb on + strand at 657.098 kb on - strand at 657.112 kb on + strand at 657.112 kb on + strand at 657.112 kb on + strand at 657.112 kb on + strand at 657.113 kb on - strand at 657.113 kb on - strand at 657.113 kb on - strand at 657.181 kb on + strand at 657.181 kb on + strand at 657.181 kb on + strand at 657.218 kb on + strand at 657.218 kb on + strand at 657.218 kb on + strand at 657.219 kb on - strand at 657.219 kb on - strand at 657.227 kb on + strand at 657.227 kb on + strand at 657.227 kb on + strand at 657.227 kb on + strand at 657.227 kb on + strand at 657.227 kb on + strand at 657.228 kb on - strand at 657.228 kb on - strand at 657.228 kb on - strand at 657.228 kb on - strand at 657.228 kb on - strand at 657.230 kb on + strand at 657.230 kb on + strand at 657.230 kb on + strand at 657.230 kb on + strand at 657.230 kb on + strand at 657.231 kb on - strand at 657.231 kb on - strand at 657.231 kb on - strand at 657.231 kb on - strand at 657.289 kb on - strand at 657.293 kb on + strand at 657.297 kb on - strand at 657.297 kb on - strand at 657.297 kb on - strand at 657.302 kb on - strand at 657.302 kb on - strand at 657.325 kb on - strand at 657.325 kb on - strand at 657.325 kb on - strand at 657.328 kb on + strand at 657.328 kb on + strand at 657.329 kb on - strand at 657.329 kb on - strand at 657.423 kb on + strand at 657.449 kb on + strand at 657.449 kb on + strand at 657.460 kb on + strand at 657.461 kb on - strand at 657.503 kb on + strand at 657.504 kb on - strand at 657.549 kb on + strand at 657.549 kb on + strand at 657.549 kb on + strand at 657.549 kb on + strand at 657.549 kb on + strand at 657.549 kb on + strand at 657.550 kb on - strand at 657.550 kb on - strand at 657.550 kb on - strand at 657.550 kb on - strand at 657.550 kb on - strand at 657.552 kb on + strand at 657.553 kb on - strand at 657.553 kb on - strand at 657.553 kb on - strand at 657.553 kb on - strand at 657.558 kb on + strand at 657.558 kb on + strand at 657.558 kb on + strand at 657.559 kb on - strand at 657.570 kb on + strand at 657.571 kb on - strand at 657.582 kb on + strand at 657.582 kb on + strand at 657.583 kb on - strand at 657.583 kb on - strand at 657.594 kb on + strand at 657.595 kb on - strand at 657.631 kb on + strand at 657.645 kb on + strand at 657.646 kb on - strand at 657.661 kb on - strand at 657.678 kb on + strand at 657.678 kb on + strand at 657.679 kb on - strand at 657.679 kb on - strand at 657.680 kb on + strand at 657.680 kb on + strand at 657.680 kb on + strand at 657.680 kb on + strand at 657.680 kb on + strand at 657.680 kb on + strand at 657.680 kb on + strand at 657.680 kb on + strand at 657.681 kb on - strand at 657.681 kb on - strand at 657.681 kb on - strand at 657.681 kb on - strand at 657.681 kb on - strand at 657.681 kb on - strand at 657.681 kb on - strand at 657.681 kb on - strand at 657.681 kb on - strand at 657.702 kb on + strand at 657.702 kb on + strand at 657.703 kb on - strand at 657.703 kb on - strand at 657.709 kb on + strand at 657.709 kb on + strand at 657.709 kb on + strand at 657.709 kb on + strand at 657.709 kb on + strand at 657.710 kb on - strand at 657.710 kb on - strand at 657.712 kb on + strand at 657.712 kb on + strand at 657.712 kb on + strand at 657.712 kb on + strand at 657.712 kb on + strand at 657.712 kb on + strand at 657.712 kb on + strand at 657.712 kb on + strand at 657.712 kb on + strand at 657.712 kb on + strand at 657.713 kb on - strand at 657.713 kb on - strand at 657.713 kb on - strand at 657.713 kb on - strand at 657.713 kb on - strand at 657.713 kb on - strand at 657.713 kb on - strand at 657.713 kb on - strand at 657.713 kb on - strand at 657.713 kb on - strand at 657.802 kb on + strand at 657.859 kb on + strand, within DZA65_RS03080 at 657.859 kb on + strand, within DZA65_RS03080 at 657.859 kb on + strand, within DZA65_RS03080 at 657.860 kb on - strand, within DZA65_RS03080 at 657.881 kb on + strand, within DZA65_RS03080 at 657.881 kb on + strand, within DZA65_RS03080 at 657.890 kb on + strand, within DZA65_RS03080 at 657.890 kb on + strand, within DZA65_RS03080 at 657.890 kb on + strand, within DZA65_RS03080 at 657.890 kb on + strand, within DZA65_RS03080 at 657.891 kb on - strand, within DZA65_RS03080 at 657.891 kb on - strand, within DZA65_RS03080 at 657.900 kb on + strand, within DZA65_RS03080 at 657.901 kb on - strand, within DZA65_RS03080 at 657.901 kb on - strand, within DZA65_RS03080 at 657.902 kb on + strand, within DZA65_RS03080 at 657.902 kb on + strand, within DZA65_RS03080 at 657.903 kb on - strand, within DZA65_RS03080 at 657.947 kb on + strand, within DZA65_RS03080 at 657.948 kb on - strand, within DZA65_RS03080 at 657.948 kb on - strand, within DZA65_RS03080 at 657.984 kb on - strand, within DZA65_RS03080 at 658.031 kb on + strand, within DZA65_RS03080 at 658.031 kb on + strand, within DZA65_RS03080 at 658.061 kb on + strand, within DZA65_RS03080 at 658.061 kb on + strand, within DZA65_RS03080 at 658.062 kb on - strand, within DZA65_RS03080 at 658.062 kb on - strand, within DZA65_RS03080 at 658.062 kb on - strand, within DZA65_RS03080 at 658.080 kb on - strand, within DZA65_RS03080 at 658.096 kb on + strand, within DZA65_RS03080 at 658.096 kb on + strand, within DZA65_RS03080 at 658.119 kb on + strand, within DZA65_RS03080 at 658.120 kb on - strand, within DZA65_RS03080 at 658.120 kb on - strand, within DZA65_RS03080 at 658.128 kb on + strand, within DZA65_RS03080 at 658.128 kb on + strand, within DZA65_RS03080 at 658.134 kb on + strand, within DZA65_RS03080 at 658.134 kb on + strand, within DZA65_RS03080 at 658.135 kb on - strand, within DZA65_RS03080 at 658.135 kb on - strand, within DZA65_RS03080 at 658.135 kb on - strand, within DZA65_RS03080 at 658.184 kb on + strand, within DZA65_RS03080 at 658.184 kb on + strand, within DZA65_RS03080 at 658.184 kb on + strand, within DZA65_RS03080 at 658.184 kb on + strand, within DZA65_RS03080 at 658.184 kb on + strand, within DZA65_RS03080 at 658.184 kb on + strand, within DZA65_RS03080 at 658.184 kb on + strand, within DZA65_RS03080 at 658.184 kb on + strand, within DZA65_RS03080 at 658.184 kb on + strand, within DZA65_RS03080 at 658.185 kb on - strand, within DZA65_RS03080 at 658.185 kb on - strand, within DZA65_RS03080 at 658.185 kb on - strand, within DZA65_RS03080 at 658.185 kb on - strand, within DZA65_RS03080 at 658.185 kb on - strand, within DZA65_RS03080 at 658.185 kb on - strand, within DZA65_RS03080 at 658.185 kb on - strand, within DZA65_RS03080 at 658.185 kb on - strand, within DZA65_RS03080 at 658.185 kb on - strand, within DZA65_RS03080 at 658.188 kb on + strand, within DZA65_RS03080 at 658.188 kb on + strand, within DZA65_RS03080 at 658.189 kb on - strand, within DZA65_RS03080 at 658.189 kb on - strand, within DZA65_RS03080 at 658.189 kb on - strand, within DZA65_RS03080 at 658.189 kb on - strand, within DZA65_RS03080 at 658.189 kb on - strand, within DZA65_RS03080 at 658.189 kb on - strand, within DZA65_RS03080 at 658.189 kb on - strand, within DZA65_RS03080 at 658.217 kb on + strand at 658.217 kb on + strand at 658.218 kb on - strand at 658.218 kb on - strand at 658.252 kb on + strand at 658.252 kb on + strand at 658.252 kb on + strand at 658.253 kb on - strand at 658.260 kb on + strand at 658.260 kb on + strand at 658.260 kb on + strand at 658.260 kb on + strand at 658.260 kb on + strand at 658.260 kb on + strand at 658.261 kb on - strand at 658.261 kb on - strand at 658.261 kb on - strand at 658.261 kb on - strand at 658.261 kb on - strand at 658.261 kb on - strand at 658.279 kb on + strand at 658.312 kb on - strand at 658.314 kb on + strand at 658.314 kb on + strand at 658.315 kb on - strand at 658.378 kb on + strand, within DZA65_RS03085 at 658.378 kb on + strand, within DZA65_RS03085 at 658.379 kb on - strand, within DZA65_RS03085 at 658.388 kb on + strand, within DZA65_RS03085 at 658.389 kb on - strand, within DZA65_RS03085 at 658.392 kb on + strand, within DZA65_RS03085 at 658.392 kb on + strand, within DZA65_RS03085 at 658.392 kb on + strand, within DZA65_RS03085 at 658.393 kb on - strand, within DZA65_RS03085 at 658.393 kb on - strand, within DZA65_RS03085 at 658.393 kb on - strand at 658.393 kb on - strand, within DZA65_RS03085 at 658.393 kb on - strand, within DZA65_RS03085 at 658.393 kb on - strand, within DZA65_RS03085 at 658.468 kb on + strand, within DZA65_RS03085 at 658.468 kb on + strand, within DZA65_RS03085 at 658.468 kb on + strand, within DZA65_RS03085 at 658.468 kb on + strand, within DZA65_RS03085 at 658.469 kb on - strand, within DZA65_RS03085 at 658.469 kb on - strand at 658.469 kb on - strand, within DZA65_RS03085 at 658.469 kb on - strand, within DZA65_RS03085 at 658.469 kb on - strand, within DZA65_RS03085 at 658.469 kb on - strand, within DZA65_RS03085 at 658.469 kb on - strand, within DZA65_RS03085 at 658.469 kb on - strand, within DZA65_RS03085 at 658.469 kb on - strand, within DZA65_RS03085 at 658.469 kb on - strand, within DZA65_RS03085 at 658.469 kb on - strand, within DZA65_RS03085 at 658.469 kb on - strand, within DZA65_RS03085 at 658.469 kb on - strand, within DZA65_RS03085 at 658.491 kb on + strand, within DZA65_RS03085 at 658.507 kb on - strand, within DZA65_RS03085 at 658.596 kb on + strand, within DZA65_RS03085 at 658.596 kb on + strand, within DZA65_RS03085 at 658.596 kb on + strand, within DZA65_RS03085 at 658.596 kb on + strand, within DZA65_RS03085 at 658.596 kb on + strand, within DZA65_RS03085 at 658.597 kb on - strand, within DZA65_RS03085 at 658.597 kb on - strand, within DZA65_RS03085 at 658.597 kb on - strand, within DZA65_RS03085 at 658.597 kb on - strand, within DZA65_RS03085 at 658.597 kb on - strand, within DZA65_RS03085 at 658.627 kb on + strand, within DZA65_RS03085 at 658.627 kb on + strand, within DZA65_RS03085 at 658.627 kb on + strand, within DZA65_RS03085 at 658.627 kb on + strand, within DZA65_RS03085 at 658.627 kb on + strand, within DZA65_RS03085 at 658.628 kb on - strand, within DZA65_RS03085 at 658.628 kb on - strand, within DZA65_RS03085 at 658.628 kb on - strand, within DZA65_RS03085 at 658.628 kb on - strand, within DZA65_RS03085 at 658.628 kb on - strand, within DZA65_RS03085 at 658.654 kb on - strand, within DZA65_RS03085 at 658.654 kb on - strand, within DZA65_RS03085 at 658.654 kb on - strand, within DZA65_RS03085 at 658.654 kb on - strand, within DZA65_RS03085 at 658.681 kb on - strand, within DZA65_RS03085 at 658.739 kb on + strand, within DZA65_RS03085 at 658.747 kb on + strand, within DZA65_RS03085 at 658.747 kb on + strand, within DZA65_RS03085 at 658.748 kb on - strand, within DZA65_RS03085 at 658.754 kb on + strand, within DZA65_RS03085 at 658.754 kb on + strand at 658.777 kb on + strand, within DZA65_RS03085 at 658.778 kb on - strand, within DZA65_RS03085 at 658.778 kb on - strand, within DZA65_RS03085 at 658.790 kb on + strand, within DZA65_RS03085 at 658.791 kb on - strand, within DZA65_RS03085 at 658.802 kb on + strand at 658.813 kb on + strand at 658.813 kb on + strand at 658.813 kb on + strand at 658.813 kb on + strand at 658.813 kb on + strand at 658.814 kb on - strand at 658.814 kb on - strand at 658.814 kb on - strand at 658.814 kb on - strand at 658.821 kb on + strand at 658.821 kb on + strand at 658.821 kb on + strand at 658.821 kb on + strand at 658.822 kb on - strand at 658.842 kb on + strand at 659.043 kb on + strand at 659.043 kb on + strand at 659.043 kb on + strand at 659.044 kb on - strand at 659.044 kb on - strand at 659.075 kb on - strand at 659.075 kb on - strand at 659.126 kb on + strand at 659.126 kb on + strand at 659.126 kb on + strand at 659.126 kb on + strand at 659.126 kb on + strand at 659.126 kb on + strand at 659.126 kb on + strand at 659.126 kb on + strand at 659.126 kb on + strand at 659.126 kb on + strand at 659.126 kb on + strand at 659.126 kb on + strand at 659.126 kb on + strand at 659.126 kb on + strand at 659.127 kb on - strand at 659.127 kb on - strand at 659.127 kb on - strand at 659.127 kb on - strand at 659.127 kb on - strand at 659.127 kb on - strand at 659.127 kb on - strand at 659.127 kb on - strand at 659.127 kb on - strand at 659.127 kb on - strand at 659.127 kb on - strand at 659.127 kb on - strand at 659.151 kb on + strand at 659.151 kb on + strand at 659.151 kb on + strand at 659.151 kb on + strand at 659.152 kb on - strand at 659.152 kb on - strand at 659.152 kb on - strand at 659.152 kb on - strand at 659.152 kb on - strand at 659.157 kb on - strand at 659.157 kb on - strand at 659.157 kb on - strand at 659.157 kb on - strand at 659.157 kb on - strand at 659.157 kb on - strand at 659.176 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 656,793 - DZA65_RS03065 0.88 -0.2 656,857 + -0.6 656,857 + -0.9 656,858 - -0.4 656,862 - +0.0 656,895 + -0.2 656,895 + -0.8 656,896 - -0.7 656,896 - -2.0 656,896 - -1.8 656,912 + -1.0 656,912 + -0.2 656,912 + -0.7 656,912 + +0.5 656,912 + -1.0 656,913 - -1.0 656,913 - -0.1 656,913 - -1.4 656,915 + -1.4 656,915 + -1.0 656,915 + -1.2 656,915 + -1.5 656,916 - -0.5 656,916 - -1.5 656,935 + -1.3 656,935 + -0.2 656,935 + +0.6 656,936 - -0.4 656,944 + -0.4 656,944 + -1.4 656,948 + -1.2 656,948 + +1.6 656,948 + -0.7 656,948 + -0.7 656,949 - +0.6 656,949 - -0.7 656,949 - -0.1 656,949 - -0.2 656,949 - +0.1 656,962 - -0.5 656,962 - -1.2 656,962 - -0.8 656,980 - -1.7 657,040 + -0.7 657,041 - +0.3 657,045 + +0.0 657,045 + -1.4 657,045 + -0.4 657,046 - +0.3 657,046 - +0.3 657,046 - -0.2 657,046 - -0.6 657,055 + -1.0 657,056 - -1.1 657,056 - -0.4 657,056 - +0.6 657,056 - -1.7 657,059 + -0.3 657,059 + -0.6 657,059 + -1.5 657,059 + +0.8 657,059 + -0.2 657,059 + +0.5 657,059 + +0.1 657,060 - -1.4 657,060 - -1.6 657,076 + +0.5 657,076 + -1.2 657,076 + +0.0 657,076 + -1.4 657,077 - -1.0 657,077 - -0.1 657,077 - +0.0 657,077 - +1.6 657,077 - -0.8 657,077 - -1.2 657,077 - +0.6 657,077 - +0.0 657,077 - -0.4 657,077 - +0.0 657,077 - -0.3 657,097 + -0.1 657,098 - -0.0 657,112 + -0.4 657,112 + -2.0 657,112 + +0.2 657,112 + -0.5 657,113 - -1.2 657,113 - -1.1 657,113 - -0.7 657,181 + -1.3 657,181 + +1.3 657,181 + -0.2 657,218 + -1.2 657,218 + -2.4 657,218 + -0.9 657,219 - -0.4 657,219 - -1.0 657,227 + -0.5 657,227 + -0.4 657,227 + +0.3 657,227 + +0.5 657,227 + -0.9 657,227 + +0.0 657,228 - +0.3 657,228 - -0.7 657,228 - -0.5 657,228 - -0.8 657,228 - -0.5 657,230 + +0.0 657,230 + -1.3 657,230 + -0.7 657,230 + +1.6 657,230 + -0.1 657,231 - +0.4 657,231 - -1.0 657,231 - +0.8 657,231 - -0.5 657,289 - +0.6 657,293 + -0.4 657,297 - -1.2 657,297 - -1.4 657,297 - -1.2 657,302 - -2.0 657,302 - -1.5 657,325 - +0.6 657,325 - -2.1 657,325 - -0.2 657,328 + -0.4 657,328 + -0.6 657,329 - -1.4 657,329 - -0.5 657,423 + +0.3 657,449 + +1.0 657,449 + -1.1 657,460 + +0.3 657,461 - -0.1 657,503 + -0.6 657,504 - -0.3 657,549 + -1.4 657,549 + -1.0 657,549 + +0.8 657,549 + -1.0 657,549 + -1.0 657,549 + -0.6 657,550 - +0.2 657,550 - -0.4 657,550 - -0.5 657,550 - -2.2 657,550 - +0.6 657,552 + -0.7 657,553 - +1.6 657,553 - +1.3 657,553 - -1.1 657,553 - -2.1 657,558 + +0.5 657,558 + +0.1 657,558 + -1.4 657,559 - -0.8 657,570 + +1.5 657,571 - -1.7 657,582 + -0.2 657,582 + +0.6 657,583 - -1.0 657,583 - -0.5 657,594 + +0.8 657,595 - -1.4 657,631 + -0.5 657,645 + +0.2 657,646 - +1.0 657,661 - -0.5 657,678 + -0.0 657,678 + -0.2 657,679 - +0.0 657,679 - -0.3 657,680 + +0.0 657,680 + -0.9 657,680 + +1.0 657,680 + +1.6 657,680 + +0.3 657,680 + +0.5 657,680 + -1.2 657,680 + -0.2 657,681 - -0.7 657,681 - +0.6 657,681 - +0.1 657,681 - +1.0 657,681 - +1.0 657,681 - -0.4 657,681 - +1.6 657,681 - -0.4 657,681 - +0.2 657,702 + +0.0 657,702 + -0.2 657,703 - -0.1 657,703 - -1.7 657,709 + -1.8 657,709 + -0.2 657,709 + +0.5 657,709 + -0.2 657,709 + +1.2 657,710 - 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Or see this region's nucleotide sequence