Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02940 and DZA65_RS02945 are separated by 678 nucleotides DZA65_RS02945 and DZA65_RS02950 are separated by 360 nucleotides
DZA65_RS02940: DZA65_RS02940 - DedA family protein, at 627,701 to 628,378
_RS02940
DZA65_RS02945: DZA65_RS02945 - transcriptional regulator ExuR, at 629,057 to 629,836
_RS02945
DZA65_RS02950: DZA65_RS02950 - MFS transporter, at 630,197 to 631,498
_RS02950
Position (kb) 629
630 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 628.119 kb on + strand, within DZA65_RS02940 at 628.119 kb on + strand, within DZA65_RS02940 at 628.120 kb on - strand, within DZA65_RS02940 at 628.176 kb on + strand, within DZA65_RS02940 at 628.293 kb on + strand, within DZA65_RS02940 at 628.294 kb on - strand, within DZA65_RS02940 at 628.294 kb on - strand, within DZA65_RS02940 at 628.294 kb on - strand, within DZA65_RS02940 at 628.294 kb on - strand, within DZA65_RS02940 at 628.294 kb on - strand, within DZA65_RS02940 at 628.366 kb on + strand at 628.367 kb on - strand at 628.367 kb on - strand at 628.367 kb on - strand at 628.367 kb on - strand at 628.367 kb on - strand at 628.370 kb on + strand at 628.370 kb on + strand at 628.370 kb on + strand at 628.370 kb on + strand at 628.370 kb on + strand at 628.370 kb on + strand at 628.370 kb on + strand at 628.370 kb on + strand at 628.370 kb on + strand at 628.370 kb on + strand at 628.370 kb on + strand at 628.370 kb on + strand at 628.370 kb on + strand at 628.371 kb on - strand at 628.371 kb on - strand at 628.371 kb on - strand at 628.371 kb on - strand at 628.371 kb on - strand at 628.371 kb on - strand at 628.371 kb on - strand at 628.371 kb on - strand at 628.371 kb on - strand at 628.371 kb on - strand at 628.371 kb on - strand at 628.371 kb on - strand at 628.372 kb on + strand at 628.417 kb on - strand at 628.497 kb on - strand at 628.517 kb on + strand at 628.517 kb on + strand at 628.517 kb on + strand at 628.518 kb on - strand at 628.518 kb on - strand at 628.518 kb on - strand at 628.518 kb on - strand at 628.518 kb on - strand at 628.553 kb on + strand at 628.553 kb on + strand at 628.553 kb on + strand at 628.553 kb on + strand at 628.553 kb on + strand at 628.553 kb on + strand at 628.553 kb on + strand at 628.553 kb on + strand at 628.553 kb on + strand at 628.553 kb on + strand at 628.553 kb on + strand at 628.553 kb on + strand at 628.553 kb on + strand at 628.553 kb on + strand at 628.553 kb on + strand at 628.553 kb on + strand at 628.553 kb on + strand at 628.554 kb on - strand at 628.554 kb on - strand at 628.554 kb on - strand at 628.554 kb on - strand at 628.554 kb on - strand at 628.554 kb on - strand at 628.554 kb on - strand at 628.554 kb on - strand at 628.554 kb on - strand at 628.554 kb on - strand at 628.554 kb on - strand at 628.554 kb on - strand at 628.554 kb on - strand at 628.554 kb on - strand at 628.554 kb on - strand at 628.554 kb on - strand at 628.554 kb on - strand at 628.554 kb on - strand at 628.554 kb on - strand at 628.554 kb on - strand at 628.554 kb on - strand at 628.554 kb on - strand at 628.554 kb on - strand at 628.554 kb on - strand at 628.554 kb on - strand at 628.554 kb on - strand at 628.554 kb on - strand at 628.554 kb on - strand at 628.554 kb on - strand at 628.554 kb on - strand at 628.554 kb on - strand at 628.554 kb on - strand at 628.554 kb on - strand at 628.554 kb on - strand at 628.554 kb on - strand at 628.554 kb on - strand at 628.555 kb on + strand at 628.555 kb on + strand at 628.555 kb on + strand at 628.555 kb on + strand at 628.556 kb on - strand at 628.556 kb on - strand at 628.556 kb on - strand at 628.556 kb on - strand at 628.556 kb on - strand at 628.556 kb on - strand at 628.556 kb on - strand at 628.556 kb on - strand at 628.556 kb on - strand at 628.565 kb on - strand at 628.570 kb on + strand at 628.570 kb on + strand at 628.570 kb on + strand at 628.571 kb on - strand at 628.575 kb on + strand at 628.575 kb on + strand at 628.575 kb on + strand at 628.575 kb on + strand at 628.575 kb on + strand at 628.575 kb on + strand at 628.575 kb on + strand at 628.575 kb on + strand at 628.575 kb on + strand at 628.576 kb on - strand at 628.576 kb on - strand at 628.576 kb on - strand at 628.576 kb on - strand at 628.576 kb on - strand at 628.576 kb on - strand at 628.576 kb on - strand at 628.576 kb on - strand at 628.576 kb on - strand at 628.576 kb on - strand at 628.576 kb on - strand at 628.576 kb on - strand at 628.576 kb on - strand at 628.576 kb on - strand at 628.576 kb on - strand at 628.576 kb on - strand at 628.576 kb on - strand at 628.576 kb on - strand at 628.576 kb on - strand at 628.576 kb on - strand at 628.576 kb on - strand at 628.576 kb on - strand at 628.576 kb on - strand at 628.577 kb on + strand at 628.577 kb on + strand at 628.577 kb on + strand at 628.577 kb on + strand at 628.577 kb on + strand at 628.577 kb on + strand at 628.578 kb on - strand at 628.578 kb on - strand at 628.578 kb on - strand at 628.578 kb on - strand at 628.578 kb on - strand at 628.578 kb on - strand at 628.578 kb on - strand at 628.578 kb on - strand at 628.578 kb on - strand at 628.578 kb on - strand at 628.578 kb on - strand at 628.578 kb on - strand at 628.646 kb on + strand at 628.647 kb on - strand at 628.647 kb on - strand at 628.647 kb on - strand at 628.702 kb on - strand at 628.713 kb on - strand at 628.713 kb on - strand at 628.722 kb on - strand at 628.825 kb on - strand at 628.848 kb on - strand at 628.851 kb on + strand at 628.851 kb on + strand at 628.852 kb on - strand at 628.852 kb on - strand at 628.852 kb on - strand at 628.871 kb on + strand at 628.871 kb on + strand at 628.872 kb on - strand at 628.872 kb on - strand at 628.909 kb on - strand at 628.909 kb on - strand at 628.940 kb on + strand at 628.941 kb on - strand at 628.968 kb on + strand at 629.115 kb on + strand at 629.115 kb on + strand at 629.288 kb on - strand, within DZA65_RS02945 at 629.390 kb on + strand, within DZA65_RS02945 at 629.390 kb on + strand, within DZA65_RS02945 at 629.390 kb on + strand, within DZA65_RS02945 at 629.391 kb on - strand, within DZA65_RS02945 at 629.522 kb on + strand, within DZA65_RS02945 at 629.808 kb on + strand at 629.849 kb on + strand at 629.849 kb on + strand at 629.849 kb on + strand at 629.850 kb on - strand at 629.854 kb on + strand at 629.855 kb on - strand at 629.892 kb on + strand at 629.893 kb on - strand at 629.893 kb on - strand at 629.919 kb on + strand at 629.920 kb on - strand at 629.920 kb on - strand at 629.920 kb on - strand at 629.920 kb on - strand at 629.920 kb on - strand at 629.920 kb on - strand at 629.920 kb on - strand at 629.920 kb on - strand at 629.920 kb on - strand at 629.920 kb on - strand at 629.920 kb on - strand at 629.922 kb on - strand at 629.922 kb on - strand at 629.922 kb on - strand at 629.922 kb on - strand at 629.931 kb on - strand at 629.931 kb on - strand at 629.931 kb on - strand at 629.931 kb on - strand at 629.931 kb on - strand at 629.931 kb on - strand at 629.931 kb on - strand at 629.931 kb on - strand at 629.931 kb on - strand at 630.041 kb on + strand at 630.042 kb on - strand at 630.043 kb on + strand at 630.043 kb on + strand at 630.043 kb on + strand at 630.044 kb on - strand at 630.044 kb on - strand at 630.044 kb on - strand at 630.044 kb on - strand at 630.044 kb on - strand at 630.061 kb on - strand at 630.061 kb on - strand at 630.070 kb on - strand at 630.070 kb on - strand at 630.072 kb on - strand at 630.072 kb on - strand at 630.072 kb on - strand at 630.112 kb on + strand at 630.112 kb on + strand at 630.112 kb on + strand at 630.112 kb on + strand at 630.112 kb on + strand at 630.113 kb on - strand at 630.113 kb on - strand at 630.113 kb on - strand at 630.113 kb on - strand at 630.113 kb on - strand at 630.113 kb on - strand at 630.113 kb on - strand at 630.113 kb on - strand at 630.113 kb on - strand at 630.113 kb on - strand at 630.113 kb on - strand at 630.152 kb on - strand at 630.156 kb on + strand at 630.305 kb on - strand at 630.329 kb on - strand, within DZA65_RS02950 at 630.329 kb on - strand, within DZA65_RS02950 at 630.340 kb on + strand, within DZA65_RS02950 at 630.356 kb on + strand, within DZA65_RS02950 at 630.356 kb on + strand, within DZA65_RS02950 at 630.356 kb on + strand, within DZA65_RS02950 at 630.356 kb on + strand, within DZA65_RS02950 at 630.357 kb on - strand, within DZA65_RS02950 at 630.357 kb on - strand, within DZA65_RS02950 at 630.357 kb on - strand, within DZA65_RS02950 at 630.359 kb on + strand, within DZA65_RS02950 at 630.360 kb on - strand, within DZA65_RS02950 at 630.522 kb on + strand, within DZA65_RS02950 at 630.522 kb on + strand, within DZA65_RS02950 at 630.522 kb on + strand, within DZA65_RS02950 at 630.522 kb on + strand, within DZA65_RS02950 at 630.522 kb on + strand, within DZA65_RS02950 at 630.522 kb on + strand, within DZA65_RS02950 at 630.523 kb on - strand, within DZA65_RS02950 at 630.523 kb on - strand, within DZA65_RS02950 at 630.557 kb on + strand, within DZA65_RS02950 at 630.557 kb on + strand, within DZA65_RS02950 at 630.558 kb on - strand, within DZA65_RS02950 at 630.558 kb on - strand, within DZA65_RS02950 at 630.621 kb on + strand, within DZA65_RS02950 at 630.621 kb on + strand, within DZA65_RS02950 at 630.621 kb on + strand, within DZA65_RS02950 at 630.645 kb on + strand, within DZA65_RS02950 at 630.645 kb on + strand, within DZA65_RS02950 at 630.645 kb on + strand, within DZA65_RS02950 at 630.646 kb on - strand, within DZA65_RS02950 at 630.646 kb on - strand, within DZA65_RS02950 at 630.646 kb on - strand, within DZA65_RS02950 at 630.646 kb on - strand, within DZA65_RS02950 at 630.646 kb on - strand, within DZA65_RS02950 at 630.719 kb on - strand, within DZA65_RS02950 at 630.726 kb on + strand, within DZA65_RS02950 at 630.726 kb on + strand, within DZA65_RS02950 at 630.727 kb on - strand, within DZA65_RS02950 at 630.727 kb on - strand, within DZA65_RS02950 at 630.727 kb on - strand, within DZA65_RS02950
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 628,119 + DZA65_RS02940 0.62 +0.6 628,119 + DZA65_RS02940 0.62 -1.7 628,120 - DZA65_RS02940 0.62 +0.6 628,176 + DZA65_RS02940 0.70 +0.0 628,293 + DZA65_RS02940 0.87 -1.0 628,294 - DZA65_RS02940 0.87 -1.1 628,294 - DZA65_RS02940 0.87 +0.0 628,294 - DZA65_RS02940 0.87 +0.2 628,294 - DZA65_RS02940 0.87 +1.0 628,294 - DZA65_RS02940 0.87 +0.3 628,366 + +0.6 628,367 - +0.5 628,367 - +0.6 628,367 - -0.7 628,367 - +0.2 628,367 - +0.7 628,370 + -2.0 628,370 + -0.5 628,370 + -0.0 628,370 + -1.5 628,370 + -2.0 628,370 + +0.9 628,370 + -1.4 628,370 + +0.6 628,370 + -0.6 628,370 + -0.2 628,370 + -1.0 628,370 + +0.0 628,370 + +0.0 628,371 - -1.9 628,371 - -0.1 628,371 - -1.2 628,371 - -1.5 628,371 - +0.2 628,371 - -0.5 628,371 - -1.7 628,371 - -0.2 628,371 - -1.5 628,371 - -2.5 628,371 - +0.8 628,371 - -2.2 628,372 + -0.7 628,417 - -1.5 628,497 - -0.1 628,517 + -0.7 628,517 + -0.5 628,517 + -0.1 628,518 - -1.0 628,518 - +0.6 628,518 - -1.0 628,518 - -1.1 628,518 - -0.2 628,553 + -0.1 628,553 + +0.4 628,553 + +0.0 628,553 + +1.0 628,553 + -0.6 628,553 + -0.8 628,553 + -0.7 628,553 + +0.3 628,553 + +0.2 628,553 + -0.7 628,553 + -0.9 628,553 + +0.4 628,553 + -0.4 628,553 + -0.4 628,553 + -1.2 628,553 + +0.6 628,553 + -0.9 628,554 - -0.5 628,554 - +0.3 628,554 - +0.6 628,554 - -0.5 628,554 - +1.0 628,554 - -1.1 628,554 - +0.6 628,554 - -1.2 628,554 - -0.5 628,554 - -1.0 628,554 - -0.4 628,554 - -1.0 628,554 - -0.5 628,554 - -0.5 628,554 - -0.8 628,554 - -1.2 628,554 - -1.5 628,554 - -1.1 628,554 - -0.2 628,554 - -2.1 628,554 - -0.5 628,554 - -0.4 628,554 - +0.0 628,554 - +0.5 628,554 - -2.9 628,554 - -0.4 628,554 - +0.9 628,554 - -0.1 628,554 - -1.0 628,554 - -0.4 628,554 - +0.0 628,554 - -1.2 628,554 - -1.5 628,554 - -0.4 628,554 - +0.4 628,554 - +0.3 628,555 + +0.0 628,555 + +1.0 628,555 + -1.2 628,555 + -0.8 628,556 - -1.7 628,556 - -0.1 628,556 - -0.2 628,556 - +0.7 628,556 - -1.5 628,556 - -1.2 628,556 - -0.6 628,556 - -0.4 628,556 - +0.0 628,565 - -0.8 628,570 + -1.2 628,570 + +1.0 628,570 + -0.4 628,571 - -0.8 628,575 + +0.0 628,575 + -0.7 628,575 + -0.4 628,575 + -0.7 628,575 + +0.6 628,575 + -0.4 628,575 + -1.2 628,575 + -0.8 628,575 + +1.0 628,576 - -1.5 628,576 - -0.1 628,576 - -1.1 628,576 - -1.2 628,576 - -2.6 628,576 - +0.4 628,576 - -2.0 628,576 - -0.4 628,576 - -1.0 628,576 - -0.4 628,576 - -0.1 628,576 - +0.5 628,576 - -1.4 628,576 - -0.4 628,576 - -0.5 628,576 - -0.9 628,576 - -0.5 628,576 - -0.7 628,576 - -0.2 628,576 - -1.5 628,576 - -1.2 628,576 - +0.6 628,576 - -0.1 628,577 + -0.6 628,577 + -0.2 628,577 + -1.2 628,577 + +1.4 628,577 + -0.0 628,577 + +0.2 628,578 - -0.5 628,578 - -0.7 628,578 - -0.7 628,578 - +0.6 628,578 - -0.1 628,578 - -1.2 628,578 - -1.0 628,578 - -1.2 628,578 - -0.4 628,578 - +0.0 628,578 - +0.0 628,578 - -1.5 628,646 + +0.6 628,647 - -0.4 628,647 - -2.9 628,647 - -2.0 628,702 - -2.7 628,713 - +0.0 628,713 - +0.0 628,722 - +0.5 628,825 - -1.2 628,848 - +1.4 628,851 + +0.2 628,851 + -0.2 628,852 - +1.6 628,852 - +0.9 628,852 - -1.7 628,871 + +1.1 628,871 + -0.6 628,872 - +1.0 628,872 - +0.5 628,909 - -1.2 628,909 - +1.6 628,940 + +1.1 628,941 - +0.6 628,968 + -2.4 629,115 + +0.5 629,115 + -0.7 629,288 - DZA65_RS02945 0.30 -0.7 629,390 + DZA65_RS02945 0.43 -2.0 629,390 + DZA65_RS02945 0.43 -1.2 629,390 + DZA65_RS02945 0.43 -0.0 629,391 - DZA65_RS02945 0.43 -1.4 629,522 + DZA65_RS02945 0.60 -1.0 629,808 + -0.2 629,849 + -1.2 629,849 + -0.4 629,849 + -2.0 629,850 - -1.0 629,854 + -0.5 629,855 - -0.8 629,892 + -0.2 629,893 - +0.2 629,893 - -1.5 629,919 + +0.3 629,920 - +1.0 629,920 - +0.0 629,920 - -1.2 629,920 - -0.6 629,920 - -0.4 629,920 - -0.1 629,920 - -0.4 629,920 - -1.2 629,920 - -0.2 629,920 - -0.2 629,920 - +0.3 629,922 - +0.0 629,922 - +0.0 629,922 - +0.0 629,922 - -0.4 629,931 - +0.3 629,931 - -1.4 629,931 - +4.2 629,931 - -0.1 629,931 - -0.4 629,931 - +0.5 629,931 - -1.1 629,931 - -0.8 629,931 - -0.4 630,041 + -1.0 630,042 - -1.4 630,043 + -0.2 630,043 + +2.4 630,043 + -1.4 630,044 - -1.0 630,044 - +2.2 630,044 - +0.0 630,044 - -0.2 630,044 - -1.0 630,061 - -0.6 630,061 - +0.0 630,070 - -0.4 630,070 - +0.0 630,072 - -0.1 630,072 - -0.7 630,072 - +1.4 630,112 + -0.5 630,112 + +1.2 630,112 + -0.4 630,112 + +0.0 630,112 + -1.4 630,113 - +0.9 630,113 - -0.5 630,113 - -0.4 630,113 - -1.4 630,113 - -1.4 630,113 - -0.2 630,113 - -1.3 630,113 - -0.4 630,113 - +1.0 630,113 - -0.2 630,113 - +0.6 630,152 - +0.4 630,156 + -0.5 630,305 - -1.0 630,329 - DZA65_RS02950 0.10 +1.0 630,329 - DZA65_RS02950 0.10 -0.7 630,340 + DZA65_RS02950 0.11 -1.6 630,356 + DZA65_RS02950 0.12 -0.0 630,356 + DZA65_RS02950 0.12 -1.5 630,356 + DZA65_RS02950 0.12 -0.5 630,356 + DZA65_RS02950 0.12 -0.5 630,357 - DZA65_RS02950 0.12 +0.5 630,357 - DZA65_RS02950 0.12 -0.2 630,357 - DZA65_RS02950 0.12 +0.0 630,359 + DZA65_RS02950 0.12 +0.2 630,360 - DZA65_RS02950 0.13 -1.8 630,522 + DZA65_RS02950 0.25 -0.7 630,522 + DZA65_RS02950 0.25 -1.4 630,522 + DZA65_RS02950 0.25 -0.7 630,522 + DZA65_RS02950 0.25 -1.0 630,522 + DZA65_RS02950 0.25 -1.3 630,522 + DZA65_RS02950 0.25 +1.0 630,523 - DZA65_RS02950 0.25 -0.2 630,523 - DZA65_RS02950 0.25 -0.2 630,557 + DZA65_RS02950 0.28 +0.8 630,557 + DZA65_RS02950 0.28 -0.2 630,558 - DZA65_RS02950 0.28 -0.4 630,558 - DZA65_RS02950 0.28 -1.3 630,621 + DZA65_RS02950 0.33 -0.7 630,621 + DZA65_RS02950 0.33 -0.5 630,621 + DZA65_RS02950 0.33 +0.6 630,645 + DZA65_RS02950 0.34 +1.3 630,645 + DZA65_RS02950 0.34 -1.4 630,645 + DZA65_RS02950 0.34 -0.7 630,646 - DZA65_RS02950 0.34 +0.6 630,646 - DZA65_RS02950 0.34 +0.4 630,646 - DZA65_RS02950 0.34 -0.4 630,646 - DZA65_RS02950 0.34 +0.3 630,646 - DZA65_RS02950 0.34 -2.4 630,719 - DZA65_RS02950 0.40 -0.1 630,726 + DZA65_RS02950 0.41 -0.1 630,726 + DZA65_RS02950 0.41 -0.8 630,727 - DZA65_RS02950 0.41 -0.8 630,727 - DZA65_RS02950 0.41 -0.5 630,727 - DZA65_RS02950 0.41 -0.1
Or see this region's nucleotide sequence