Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02885 and DZA65_RS02890 are separated by 109 nucleotides DZA65_RS02890 and DZA65_RS02895 are separated by 175 nucleotides DZA65_RS02895 and DZA65_RS02900 are separated by 131 nucleotides DZA65_RS02900 and DZA65_RS02905 are separated by 109 nucleotides
DZA65_RS02885: DZA65_RS02885 - diacylglycerol kinase, at 620,664 to 621,029
_RS02885
DZA65_RS02890: DZA65_RS02890 - repressor LexA, at 621,139 to 621,750
_RS02890
DZA65_RS02895: DZA65_RS02895 - zinc uptake transcriptional repressor Zur, at 621,926 to 622,435
_RS02895
DZA65_RS02900: DZA65_RS02900 - pirin family protein, at 622,567 to 623,277
_RS02900
DZA65_RS02905: DZA65_RS02905 - LysR family transcriptional regulator, at 623,387 to 624,283
_RS02905
Position (kb) 621
622
623 Strain fitness (log2 ratio) -2
-1
0
1
2 at 621.040 kb on - strand at 621.040 kb on - strand at 621.097 kb on + strand at 621.098 kb on - strand at 621.098 kb on - strand at 621.099 kb on + strand at 621.099 kb on + strand at 621.099 kb on + strand at 621.099 kb on + strand at 621.099 kb on + strand at 621.100 kb on - strand at 621.101 kb on + strand at 621.101 kb on + strand at 621.101 kb on + strand at 621.101 kb on + strand at 621.748 kb on + strand at 621.748 kb on + strand at 621.748 kb on + strand at 621.748 kb on + strand at 621.748 kb on + strand at 621.748 kb on + strand at 621.748 kb on + strand at 621.749 kb on - strand at 621.749 kb on - strand at 621.749 kb on - strand at 621.761 kb on + strand at 621.761 kb on + strand at 621.762 kb on - strand at 621.793 kb on + strand at 621.890 kb on + strand at 621.890 kb on + strand at 621.890 kb on + strand at 621.890 kb on + strand at 621.890 kb on + strand at 621.891 kb on - strand at 621.903 kb on + strand at 621.961 kb on + strand at 621.961 kb on + strand at 621.961 kb on + strand at 621.962 kb on - strand at 621.962 kb on - strand at 621.962 kb on - strand at 622.033 kb on + strand, within DZA65_RS02895 at 622.033 kb on + strand, within DZA65_RS02895 at 622.033 kb on + strand, within DZA65_RS02895 at 622.034 kb on - strand, within DZA65_RS02895 at 622.034 kb on - strand at 622.034 kb on - strand at 622.034 kb on - strand, within DZA65_RS02895 at 622.034 kb on - strand, within DZA65_RS02895 at 622.074 kb on - strand, within DZA65_RS02895 at 622.074 kb on - strand, within DZA65_RS02895 at 622.132 kb on + strand, within DZA65_RS02895 at 622.132 kb on + strand, within DZA65_RS02895 at 622.132 kb on + strand, within DZA65_RS02895 at 622.133 kb on - strand, within DZA65_RS02895 at 622.133 kb on - strand, within DZA65_RS02895 at 622.133 kb on - strand at 622.133 kb on - strand, within DZA65_RS02895 at 622.147 kb on + strand, within DZA65_RS02895 at 622.147 kb on + strand, within DZA65_RS02895 at 622.147 kb on + strand, within DZA65_RS02895 at 622.147 kb on + strand, within DZA65_RS02895 at 622.147 kb on + strand, within DZA65_RS02895 at 622.147 kb on + strand, within DZA65_RS02895 at 622.148 kb on - strand, within DZA65_RS02895 at 622.153 kb on + strand, within DZA65_RS02895 at 622.153 kb on + strand, within DZA65_RS02895 at 622.182 kb on + strand, within DZA65_RS02895 at 622.182 kb on + strand, within DZA65_RS02895 at 622.183 kb on - strand, within DZA65_RS02895 at 622.183 kb on - strand, within DZA65_RS02895 at 622.183 kb on - strand, within DZA65_RS02895 at 622.183 kb on - strand, within DZA65_RS02895 at 622.183 kb on - strand, within DZA65_RS02895 at 622.186 kb on + strand, within DZA65_RS02895 at 622.186 kb on + strand, within DZA65_RS02895 at 622.211 kb on - strand, within DZA65_RS02895 at 622.302 kb on + strand, within DZA65_RS02895 at 622.477 kb on + strand at 622.478 kb on - strand at 622.478 kb on - strand at 622.478 kb on - strand at 622.490 kb on + strand at 622.491 kb on - strand at 622.568 kb on + strand at 622.582 kb on + strand at 622.582 kb on + strand at 622.583 kb on - strand at 622.583 kb on - strand at 622.620 kb on + strand at 622.620 kb on + strand at 622.620 kb on + strand at 622.663 kb on + strand, within DZA65_RS02900 at 622.663 kb on + strand, within DZA65_RS02900 at 622.663 kb on + strand, within DZA65_RS02900 at 622.663 kb on + strand, within DZA65_RS02900 at 622.663 kb on + strand, within DZA65_RS02900 at 622.664 kb on - strand, within DZA65_RS02900 at 622.664 kb on - strand, within DZA65_RS02900 at 622.664 kb on - strand, within DZA65_RS02900 at 622.666 kb on + strand, within DZA65_RS02900 at 622.666 kb on + strand, within DZA65_RS02900 at 622.666 kb on + strand, within DZA65_RS02900 at 622.666 kb on + strand, within DZA65_RS02900 at 622.667 kb on - strand, within DZA65_RS02900 at 622.667 kb on - strand, within DZA65_RS02900 at 622.667 kb on - strand, within DZA65_RS02900 at 622.726 kb on + strand, within DZA65_RS02900 at 622.726 kb on + strand, within DZA65_RS02900 at 622.726 kb on + strand, within DZA65_RS02900 at 622.726 kb on + strand, within DZA65_RS02900 at 622.726 kb on + strand, within DZA65_RS02900 at 622.726 kb on + strand, within DZA65_RS02900 at 622.726 kb on + strand, within DZA65_RS02900 at 622.726 kb on + strand, within DZA65_RS02900 at 622.727 kb on - strand at 622.727 kb on - strand, within DZA65_RS02900 at 622.727 kb on - strand, within DZA65_RS02900 at 622.727 kb on - strand, within DZA65_RS02900 at 622.727 kb on - strand, within DZA65_RS02900 at 622.727 kb on - strand, within DZA65_RS02900 at 622.727 kb on - strand, within DZA65_RS02900 at 622.727 kb on - strand, within DZA65_RS02900 at 622.727 kb on - strand, within DZA65_RS02900 at 622.730 kb on + strand, within DZA65_RS02900 at 622.730 kb on + strand, within DZA65_RS02900 at 622.730 kb on + strand, within DZA65_RS02900 at 622.730 kb on + strand, within DZA65_RS02900 at 622.730 kb on + strand, within DZA65_RS02900 at 622.730 kb on + strand, within DZA65_RS02900 at 622.731 kb on - strand, within DZA65_RS02900 at 622.731 kb on - strand, within DZA65_RS02900 at 622.731 kb on - strand, within DZA65_RS02900 at 622.758 kb on + strand, within DZA65_RS02900 at 622.758 kb on + strand, within DZA65_RS02900 at 622.759 kb on - strand, within DZA65_RS02900 at 622.759 kb on - strand, within DZA65_RS02900 at 622.856 kb on + strand, within DZA65_RS02900 at 622.857 kb on - strand, within DZA65_RS02900 at 622.977 kb on - strand, within DZA65_RS02900 at 623.005 kb on + strand, within DZA65_RS02900 at 623.031 kb on + strand, within DZA65_RS02900 at 623.031 kb on + strand, within DZA65_RS02900 at 623.054 kb on + strand, within DZA65_RS02900 at 623.055 kb on - strand, within DZA65_RS02900 at 623.055 kb on - strand, within DZA65_RS02900 at 623.102 kb on + strand, within DZA65_RS02900 at 623.176 kb on + strand, within DZA65_RS02900 at 623.177 kb on - strand, within DZA65_RS02900 at 623.177 kb on - strand, within DZA65_RS02900 at 623.177 kb on - strand, within DZA65_RS02900 at 623.192 kb on + strand, within DZA65_RS02900 at 623.192 kb on + strand, within DZA65_RS02900 at 623.192 kb on + strand, within DZA65_RS02900 at 623.192 kb on + strand, within DZA65_RS02900 at 623.192 kb on + strand, within DZA65_RS02900 at 623.192 kb on + strand, within DZA65_RS02900 at 623.192 kb on + strand, within DZA65_RS02900 at 623.193 kb on - strand, within DZA65_RS02900 at 623.193 kb on - strand, within DZA65_RS02900 at 623.213 kb on + strand at 623.213 kb on + strand at 623.213 kb on + strand at 623.214 kb on - strand at 623.214 kb on - strand at 623.234 kb on + strand at 623.268 kb on + strand at 623.281 kb on - strand at 623.281 kb on - strand at 623.297 kb on + strand at 623.298 kb on - strand at 623.298 kb on - strand at 623.303 kb on + strand at 623.303 kb on + strand at 623.304 kb on - strand at 623.314 kb on + strand at 623.314 kb on + strand at 623.314 kb on + strand at 623.314 kb on + strand at 623.314 kb on + strand at 623.314 kb on + strand at 623.314 kb on + strand at 623.314 kb on + strand at 623.314 kb on + strand at 623.315 kb on - strand at 623.315 kb on - strand at 623.315 kb on - strand at 623.315 kb on - strand at 623.315 kb on - strand at 623.315 kb on - strand at 623.315 kb on - strand at 623.412 kb on + strand at 623.412 kb on + strand at 623.412 kb on + strand at 623.413 kb on - strand at 623.413 kb on - strand at 623.413 kb on - strand at 623.421 kb on + strand at 623.422 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 621,040 - -0.7 621,040 - +0.6 621,097 + +0.4 621,098 - -0.0 621,098 - -1.1 621,099 + -1.9 621,099 + -1.9 621,099 + +0.6 621,099 + +0.5 621,099 + +0.5 621,100 - +0.6 621,101 + -0.9 621,101 + -1.5 621,101 + -1.9 621,101 + -0.1 621,748 + +1.1 621,748 + -0.2 621,748 + -1.6 621,748 + -1.1 621,748 + +0.2 621,748 + -0.2 621,748 + -0.0 621,749 - +0.1 621,749 - -0.6 621,749 - +0.2 621,761 + +0.1 621,761 + +0.3 621,762 - -0.1 621,793 + +0.1 621,890 + -0.7 621,890 + -1.5 621,890 + +1.6 621,890 + +0.3 621,890 + -0.9 621,891 - -1.4 621,903 + +0.1 621,961 + -0.3 621,961 + -0.9 621,961 + -1.2 621,962 - +1.4 621,962 - -0.5 621,962 - -0.4 622,033 + DZA65_RS02895 0.21 -0.8 622,033 + DZA65_RS02895 0.21 -1.1 622,033 + DZA65_RS02895 0.21 +0.9 622,034 - DZA65_RS02895 0.21 -0.9 622,034 - +0.9 622,034 - -0.4 622,034 - DZA65_RS02895 0.21 +0.6 622,034 - DZA65_RS02895 0.21 +1.6 622,074 - DZA65_RS02895 0.29 +1.6 622,074 - DZA65_RS02895 0.29 -0.9 622,132 + DZA65_RS02895 0.40 -0.2 622,132 + DZA65_RS02895 0.40 -0.7 622,132 + DZA65_RS02895 0.40 -0.4 622,133 - DZA65_RS02895 0.41 -0.2 622,133 - DZA65_RS02895 0.41 -1.0 622,133 - +2.2 622,133 - DZA65_RS02895 0.41 +0.6 622,147 + DZA65_RS02895 0.43 -2.3 622,147 + DZA65_RS02895 0.43 -1.5 622,147 + DZA65_RS02895 0.43 +0.3 622,147 + DZA65_RS02895 0.43 -0.3 622,147 + DZA65_RS02895 0.43 +0.2 622,147 + DZA65_RS02895 0.43 +2.1 622,148 - DZA65_RS02895 0.44 +0.2 622,153 + DZA65_RS02895 0.45 -0.4 622,153 + DZA65_RS02895 0.45 +0.8 622,182 + DZA65_RS02895 0.50 +0.1 622,182 + DZA65_RS02895 0.50 +0.1 622,183 - DZA65_RS02895 0.50 -0.8 622,183 - DZA65_RS02895 0.50 -1.2 622,183 - DZA65_RS02895 0.50 -0.7 622,183 - DZA65_RS02895 0.50 -0.4 622,183 - DZA65_RS02895 0.50 -0.9 622,186 + DZA65_RS02895 0.51 -1.7 622,186 + DZA65_RS02895 0.51 -1.4 622,211 - DZA65_RS02895 0.56 -0.0 622,302 + DZA65_RS02895 0.74 -1.7 622,477 + +0.5 622,478 - +0.1 622,478 - +0.6 622,478 - +0.0 622,490 + +0.8 622,491 - -0.7 622,568 + -0.7 622,582 + -0.2 622,582 + +0.2 622,583 - -1.2 622,583 - -2.5 622,620 + +0.6 622,620 + +0.6 622,620 + -1.0 622,663 + DZA65_RS02900 0.14 +0.6 622,663 + DZA65_RS02900 0.14 -0.2 622,663 + DZA65_RS02900 0.14 -1.2 622,663 + DZA65_RS02900 0.14 -1.8 622,663 + DZA65_RS02900 0.14 +0.0 622,664 - DZA65_RS02900 0.14 -0.6 622,664 - DZA65_RS02900 0.14 +0.0 622,664 - DZA65_RS02900 0.14 +0.6 622,666 + DZA65_RS02900 0.14 -0.7 622,666 + DZA65_RS02900 0.14 +0.5 622,666 + DZA65_RS02900 0.14 +0.9 622,666 + DZA65_RS02900 0.14 -2.1 622,667 - DZA65_RS02900 0.14 +0.8 622,667 - DZA65_RS02900 0.14 -0.7 622,667 - DZA65_RS02900 0.14 -0.5 622,726 + DZA65_RS02900 0.22 -1.4 622,726 + DZA65_RS02900 0.22 -1.4 622,726 + DZA65_RS02900 0.22 +0.5 622,726 + DZA65_RS02900 0.22 -1.0 622,726 + DZA65_RS02900 0.22 -1.1 622,726 + DZA65_RS02900 0.22 +0.3 622,726 + DZA65_RS02900 0.22 +0.6 622,726 + DZA65_RS02900 0.22 +0.2 622,727 - +0.6 622,727 - DZA65_RS02900 0.23 -1.2 622,727 - DZA65_RS02900 0.23 -0.7 622,727 - DZA65_RS02900 0.23 +1.1 622,727 - DZA65_RS02900 0.23 +0.0 622,727 - DZA65_RS02900 0.23 +0.4 622,727 - DZA65_RS02900 0.23 -1.0 622,727 - DZA65_RS02900 0.23 -1.3 622,727 - DZA65_RS02900 0.23 +0.6 622,730 + DZA65_RS02900 0.23 -0.4 622,730 + DZA65_RS02900 0.23 -0.2 622,730 + DZA65_RS02900 0.23 -0.2 622,730 + DZA65_RS02900 0.23 -0.9 622,730 + DZA65_RS02900 0.23 -2.5 622,730 + DZA65_RS02900 0.23 +1.0 622,731 - DZA65_RS02900 0.23 -0.7 622,731 - DZA65_RS02900 0.23 +0.6 622,731 - DZA65_RS02900 0.23 +1.3 622,758 + DZA65_RS02900 0.27 -1.0 622,758 + DZA65_RS02900 0.27 -0.2 622,759 - DZA65_RS02900 0.27 -0.4 622,759 - DZA65_RS02900 0.27 -1.3 622,856 + DZA65_RS02900 0.41 -2.0 622,857 - DZA65_RS02900 0.41 +1.4 622,977 - DZA65_RS02900 0.58 -1.4 623,005 + DZA65_RS02900 0.62 -0.1 623,031 + DZA65_RS02900 0.65 -2.0 623,031 + DZA65_RS02900 0.65 -1.0 623,054 + DZA65_RS02900 0.68 -1.8 623,055 - DZA65_RS02900 0.69 +2.0 623,055 - DZA65_RS02900 0.69 +0.4 623,102 + DZA65_RS02900 0.75 -1.8 623,176 + DZA65_RS02900 0.86 +1.6 623,177 - DZA65_RS02900 0.86 -0.2 623,177 - DZA65_RS02900 0.86 -0.6 623,177 - DZA65_RS02900 0.86 -0.2 623,192 + DZA65_RS02900 0.88 +0.8 623,192 + DZA65_RS02900 0.88 +0.6 623,192 + DZA65_RS02900 0.88 -0.6 623,192 + DZA65_RS02900 0.88 +1.6 623,192 + DZA65_RS02900 0.88 -1.0 623,192 + DZA65_RS02900 0.88 -1.0 623,192 + DZA65_RS02900 0.88 +0.0 623,193 - DZA65_RS02900 0.88 +1.2 623,193 - DZA65_RS02900 0.88 -0.4 623,213 + +0.6 623,213 + -0.4 623,213 + -1.5 623,214 - -1.4 623,214 - -0.4 623,234 + -0.4 623,268 + +0.0 623,281 - +0.5 623,281 - -1.7 623,297 + -0.1 623,298 - -0.8 623,298 - -1.4 623,303 + +0.4 623,303 + +1.4 623,304 - -0.2 623,314 + +0.4 623,314 + -1.6 623,314 + +0.8 623,314 + +0.2 623,314 + -0.2 623,314 + -1.2 623,314 + +0.0 623,314 + -0.2 623,314 + +0.4 623,315 - +1.2 623,315 - -0.2 623,315 - -0.5 623,315 - -0.4 623,315 - +0.6 623,315 - -0.2 623,315 - -0.1 623,412 + -0.8 623,412 + +1.6 623,412 + -0.7 623,413 - +0.3 623,413 - +0.8 623,413 - +0.6 623,421 + -0.2 623,422 - +0.5
Or see this region's nucleotide sequence