Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02850 and DZA65_RS02855 are separated by 444 nucleotides DZA65_RS02855 and DZA65_RS02860 are separated by 188 nucleotides DZA65_RS02860 and DZA65_RS02865 are separated by 49 nucleotides
DZA65_RS02850: DZA65_RS02850 - aspartate ammonia-lyase, at 611,660 to 613,099
_RS02850
DZA65_RS02855: DZA65_RS02855 - FxsA family protein, at 613,544 to 614,047
_RS02855
DZA65_RS02860: DZA65_RS02860 - co-chaperone GroES, at 614,236 to 614,529
_RS02860
DZA65_RS02865: DZA65_RS02865 - chaperonin GroEL, at 614,579 to 616,225
_RS02865
Position (kb) 613
614
615 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 612.630 kb on + strand, within DZA65_RS02850 at 612.631 kb on - strand, within DZA65_RS02850 at 612.631 kb on - strand, within DZA65_RS02850 at 612.657 kb on + strand, within DZA65_RS02850 at 612.709 kb on - strand, within DZA65_RS02850 at 612.709 kb on - strand, within DZA65_RS02850 at 612.709 kb on - strand, within DZA65_RS02850 at 612.714 kb on + strand, within DZA65_RS02850 at 612.714 kb on + strand, within DZA65_RS02850 at 612.714 kb on + strand, within DZA65_RS02850 at 612.715 kb on - strand, within DZA65_RS02850 at 612.715 kb on - strand, within DZA65_RS02850 at 612.715 kb on - strand, within DZA65_RS02850 at 612.715 kb on - strand, within DZA65_RS02850 at 612.807 kb on + strand, within DZA65_RS02850 at 612.808 kb on - strand, within DZA65_RS02850 at 612.808 kb on - strand, within DZA65_RS02850 at 612.809 kb on + strand, within DZA65_RS02850 at 612.809 kb on + strand, within DZA65_RS02850 at 612.809 kb on + strand, within DZA65_RS02850 at 612.809 kb on + strand, within DZA65_RS02850 at 612.809 kb on + strand, within DZA65_RS02850 at 612.810 kb on - strand, within DZA65_RS02850 at 612.810 kb on - strand, within DZA65_RS02850 at 612.810 kb on - strand, within DZA65_RS02850 at 612.810 kb on - strand, within DZA65_RS02850 at 612.810 kb on - strand, within DZA65_RS02850 at 612.810 kb on - strand, within DZA65_RS02850 at 612.939 kb on - strand, within DZA65_RS02850 at 612.944 kb on + strand, within DZA65_RS02850 at 612.945 kb on - strand, within DZA65_RS02850 at 612.945 kb on - strand, within DZA65_RS02850 at 612.956 kb on + strand at 612.996 kb on + strand at 612.996 kb on + strand at 612.997 kb on - strand at 612.997 kb on - strand at 612.997 kb on - strand at 613.032 kb on + strand at 613.035 kb on + strand at 613.035 kb on + strand at 613.035 kb on + strand at 613.035 kb on + strand at 613.035 kb on + strand at 613.036 kb on - strand at 613.036 kb on - strand at 613.036 kb on - strand at 613.060 kb on + strand at 613.061 kb on - strand at 613.061 kb on - strand at 613.064 kb on + strand at 613.065 kb on - strand at 613.065 kb on - strand at 613.065 kb on - strand at 613.065 kb on - strand at 613.065 kb on - strand at 613.065 kb on - strand at 613.087 kb on + strand at 613.087 kb on + strand at 613.087 kb on + strand at 613.088 kb on - strand at 613.090 kb on + strand at 613.090 kb on + strand at 613.090 kb on + strand at 613.091 kb on - strand at 613.091 kb on - strand at 613.091 kb on - strand at 613.113 kb on + strand at 613.113 kb on + strand at 613.113 kb on + strand at 613.114 kb on - strand at 613.114 kb on - strand at 613.115 kb on + strand at 613.115 kb on + strand at 613.116 kb on - strand at 613.116 kb on - strand at 613.116 kb on - strand at 613.116 kb on - strand at 613.129 kb on - strand at 613.138 kb on - strand at 613.138 kb on - strand at 613.144 kb on + strand at 613.144 kb on + strand at 613.144 kb on + strand at 613.144 kb on + strand at 613.145 kb on - strand at 613.145 kb on - strand at 613.204 kb on + strand at 613.209 kb on + strand at 613.210 kb on - strand at 613.210 kb on - strand at 613.221 kb on - strand at 613.221 kb on - strand at 613.249 kb on + strand at 613.250 kb on - strand at 613.250 kb on - strand at 613.250 kb on - strand at 613.321 kb on + strand at 613.321 kb on + strand at 613.321 kb on + strand at 613.321 kb on + strand at 613.322 kb on - strand at 613.322 kb on - strand at 613.356 kb on + strand at 613.356 kb on + strand at 613.357 kb on - strand at 613.357 kb on - strand at 613.357 kb on - strand at 613.370 kb on + strand at 613.371 kb on - strand at 613.384 kb on + strand at 613.384 kb on + strand at 613.384 kb on + strand at 613.384 kb on + strand at 613.384 kb on + strand at 613.385 kb on - strand at 613.385 kb on - strand at 613.386 kb on + strand at 613.386 kb on + strand at 613.386 kb on + strand at 613.386 kb on + strand at 613.386 kb on + strand at 613.386 kb on + strand at 613.387 kb on - strand at 613.387 kb on - strand at 613.387 kb on - strand at 613.387 kb on - strand at 613.387 kb on - strand at 613.387 kb on - strand at 613.387 kb on - strand at 613.387 kb on - strand at 613.387 kb on - strand at 613.390 kb on + strand at 613.390 kb on + strand at 613.390 kb on + strand at 613.390 kb on + strand at 613.390 kb on + strand at 613.390 kb on + strand at 613.391 kb on - strand at 613.391 kb on - strand at 613.391 kb on - strand at 613.391 kb on - strand at 613.391 kb on - strand at 613.407 kb on + strand at 613.408 kb on - strand at 613.409 kb on + strand at 613.409 kb on + strand at 613.410 kb on - strand at 613.410 kb on - strand at 613.410 kb on - strand at 613.410 kb on - strand at 613.410 kb on - strand at 613.414 kb on + strand at 613.414 kb on + strand at 613.415 kb on - strand at 613.419 kb on + strand at 613.419 kb on + strand at 613.419 kb on + strand at 613.419 kb on + strand at 613.420 kb on - strand at 613.420 kb on - strand at 613.420 kb on - strand at 613.420 kb on - strand at 613.437 kb on + strand at 613.437 kb on + strand at 613.437 kb on + strand at 613.438 kb on - strand at 613.438 kb on - strand at 613.438 kb on - strand at 613.438 kb on - strand at 613.445 kb on + strand at 613.445 kb on + strand at 613.446 kb on - strand at 613.471 kb on + strand at 613.478 kb on + strand at 613.499 kb on - strand at 613.509 kb on - strand at 613.509 kb on - strand at 613.520 kb on - strand at 613.524 kb on - strand at 613.524 kb on - strand at 613.583 kb on + strand at 613.583 kb on + strand at 613.597 kb on + strand, within DZA65_RS02855 at 613.598 kb on - strand, within DZA65_RS02855 at 613.678 kb on + strand, within DZA65_RS02855 at 613.678 kb on + strand, within DZA65_RS02855 at 613.678 kb on + strand, within DZA65_RS02855 at 613.678 kb on + strand, within DZA65_RS02855 at 613.678 kb on + strand, within DZA65_RS02855 at 613.678 kb on + strand, within DZA65_RS02855 at 613.678 kb on + strand, within DZA65_RS02855 at 613.679 kb on - strand, within DZA65_RS02855 at 613.679 kb on - strand, within DZA65_RS02855 at 613.679 kb on - strand, within DZA65_RS02855 at 613.679 kb on - strand, within DZA65_RS02855 at 613.683 kb on + strand, within DZA65_RS02855 at 613.683 kb on + strand, within DZA65_RS02855 at 613.683 kb on + strand, within DZA65_RS02855 at 613.683 kb on + strand, within DZA65_RS02855 at 613.683 kb on + strand, within DZA65_RS02855 at 613.683 kb on + strand, within DZA65_RS02855 at 613.683 kb on + strand, within DZA65_RS02855 at 613.683 kb on + strand, within DZA65_RS02855 at 613.683 kb on + strand, within DZA65_RS02855 at 613.684 kb on - strand, within DZA65_RS02855 at 613.684 kb on - strand, within DZA65_RS02855 at 613.684 kb on - strand, within DZA65_RS02855 at 613.684 kb on - strand, within DZA65_RS02855 at 613.684 kb on - strand, within DZA65_RS02855 at 613.687 kb on + strand, within DZA65_RS02855 at 613.687 kb on + strand, within DZA65_RS02855 at 613.688 kb on - strand, within DZA65_RS02855 at 613.763 kb on - strand, within DZA65_RS02855 at 613.776 kb on + strand, within DZA65_RS02855 at 613.791 kb on + strand, within DZA65_RS02855 at 613.792 kb on - strand, within DZA65_RS02855 at 613.792 kb on - strand, within DZA65_RS02855 at 613.792 kb on - strand, within DZA65_RS02855 at 614.100 kb on + strand at 614.100 kb on + strand at 614.100 kb on + strand at 614.101 kb on - strand at 614.154 kb on + strand at 614.154 kb on + strand at 614.154 kb on + strand at 614.154 kb on + strand at 614.154 kb on + strand at 614.154 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 612,630 + DZA65_RS02850 0.67 -0.9 612,631 - DZA65_RS02850 0.67 -0.9 612,631 - DZA65_RS02850 0.67 -2.6 612,657 + DZA65_RS02850 0.69 -1.2 612,709 - DZA65_RS02850 0.73 +0.1 612,709 - DZA65_RS02850 0.73 +0.3 612,709 - DZA65_RS02850 0.73 +0.1 612,714 + DZA65_RS02850 0.73 -0.7 612,714 + DZA65_RS02850 0.73 -2.3 612,714 + DZA65_RS02850 0.73 -1.2 612,715 - DZA65_RS02850 0.73 -2.1 612,715 - DZA65_RS02850 0.73 -2.4 612,715 - DZA65_RS02850 0.73 +0.5 612,715 - DZA65_RS02850 0.73 -2.1 612,807 + DZA65_RS02850 0.80 -1.4 612,808 - DZA65_RS02850 0.80 -1.0 612,808 - DZA65_RS02850 0.80 -0.0 612,809 + DZA65_RS02850 0.80 -1.0 612,809 + DZA65_RS02850 0.80 -0.6 612,809 + DZA65_RS02850 0.80 +0.5 612,809 + DZA65_RS02850 0.80 -0.7 612,809 + DZA65_RS02850 0.80 -0.7 612,810 - DZA65_RS02850 0.80 -0.3 612,810 - DZA65_RS02850 0.80 -2.1 612,810 - DZA65_RS02850 0.80 -0.5 612,810 - DZA65_RS02850 0.80 -1.1 612,810 - DZA65_RS02850 0.80 -1.5 612,810 - DZA65_RS02850 0.80 -0.6 612,939 - DZA65_RS02850 0.89 -0.9 612,944 + DZA65_RS02850 0.89 -0.9 612,945 - DZA65_RS02850 0.89 -0.5 612,945 - DZA65_RS02850 0.89 -0.5 612,956 + -2.9 612,996 + -1.5 612,996 + +0.3 612,997 - -0.0 612,997 - -0.9 612,997 - -0.7 613,032 + -2.9 613,035 + -1.5 613,035 + -0.5 613,035 + -1.7 613,035 + -0.4 613,035 + -0.5 613,036 - +0.6 613,036 - -0.9 613,036 - -0.5 613,060 + -1.5 613,061 - -1.2 613,061 - -0.5 613,064 + -1.4 613,065 - -1.8 613,065 - -2.1 613,065 - -0.2 613,065 - +0.2 613,065 - +0.6 613,065 - -0.4 613,087 + -2.0 613,087 + -0.7 613,087 + +1.2 613,088 - +0.2 613,090 + -1.2 613,090 + -0.9 613,090 + +1.6 613,091 - +0.1 613,091 - +0.9 613,091 - +0.6 613,113 + -1.2 613,113 + -0.4 613,113 + -1.4 613,114 - -1.4 613,114 - -0.3 613,115 + +0.6 613,115 + -0.5 613,116 - -1.3 613,116 - -0.1 613,116 - +0.3 613,116 - +1.0 613,129 - +0.3 613,138 - -0.6 613,138 - -0.7 613,144 + -0.5 613,144 + -1.9 613,144 + -1.9 613,144 + -1.7 613,145 - +0.1 613,145 - +0.1 613,204 + +0.2 613,209 + -1.7 613,210 - -1.4 613,210 - +0.5 613,221 - -1.9 613,221 - +0.5 613,249 + +0.4 613,250 - -2.2 613,250 - +0.9 613,250 - -0.7 613,321 + -1.2 613,321 + -1.2 613,321 + -0.5 613,321 + -0.9 613,322 - +0.8 613,322 - +0.8 613,356 + -0.7 613,356 + +0.1 613,357 - -0.5 613,357 - -1.7 613,357 - +0.8 613,370 + -1.1 613,371 - -1.2 613,384 + +0.2 613,384 + -0.7 613,384 + +1.2 613,384 + -2.2 613,384 + -0.3 613,385 - -1.5 613,385 - -0.9 613,386 + +0.3 613,386 + -0.9 613,386 + -0.9 613,386 + -1.2 613,386 + -0.2 613,386 + +0.6 613,387 - -0.2 613,387 - -0.1 613,387 - -0.2 613,387 - -1.1 613,387 - -2.2 613,387 - +1.0 613,387 - -1.2 613,387 - +0.4 613,387 - +0.5 613,390 + +0.2 613,390 + -0.9 613,390 + +0.4 613,390 + +0.1 613,390 + -1.9 613,390 + -0.4 613,391 - -0.4 613,391 - -0.3 613,391 - -0.9 613,391 - -0.5 613,391 - -0.4 613,407 + -0.9 613,408 - +0.4 613,409 + -0.2 613,409 + -1.1 613,410 - -1.3 613,410 - -1.6 613,410 - -0.5 613,410 - +0.1 613,410 - -1.7 613,414 + -0.7 613,414 + -0.7 613,415 - -2.2 613,419 + +0.6 613,419 + -0.0 613,419 + -0.5 613,419 + -1.4 613,420 - -0.2 613,420 - -0.7 613,420 - -0.3 613,420 - +0.5 613,437 + -0.7 613,437 + +0.2 613,437 + -1.2 613,438 - +1.2 613,438 - +0.1 613,438 - -0.6 613,438 - +1.4 613,445 + -0.7 613,445 + -0.2 613,446 - -0.4 613,471 + +1.5 613,478 + -0.2 613,499 - -0.2 613,509 - -0.4 613,509 - -0.8 613,520 - -1.0 613,524 - +0.3 613,524 - -1.8 613,583 + -0.2 613,583 + -0.4 613,597 + DZA65_RS02855 0.11 -0.4 613,598 - DZA65_RS02855 0.11 -0.1 613,678 + DZA65_RS02855 0.27 -0.8 613,678 + DZA65_RS02855 0.27 +2.1 613,678 + DZA65_RS02855 0.27 -1.6 613,678 + DZA65_RS02855 0.27 +1.1 613,678 + DZA65_RS02855 0.27 +1.1 613,678 + DZA65_RS02855 0.27 -1.3 613,678 + DZA65_RS02855 0.27 -2.2 613,679 - DZA65_RS02855 0.27 +1.9 613,679 - DZA65_RS02855 0.27 -1.2 613,679 - DZA65_RS02855 0.27 -1.6 613,679 - DZA65_RS02855 0.27 -0.2 613,683 + DZA65_RS02855 0.28 +0.9 613,683 + DZA65_RS02855 0.28 -0.0 613,683 + DZA65_RS02855 0.28 -0.1 613,683 + DZA65_RS02855 0.28 -0.8 613,683 + DZA65_RS02855 0.28 +0.3 613,683 + DZA65_RS02855 0.28 +0.3 613,683 + DZA65_RS02855 0.28 -2.0 613,683 + DZA65_RS02855 0.28 +0.5 613,683 + DZA65_RS02855 0.28 -0.6 613,684 - DZA65_RS02855 0.28 +1.1 613,684 - DZA65_RS02855 0.28 -0.3 613,684 - DZA65_RS02855 0.28 +0.6 613,684 - DZA65_RS02855 0.28 -0.4 613,684 - DZA65_RS02855 0.28 -0.7 613,687 + DZA65_RS02855 0.28 -0.4 613,687 + DZA65_RS02855 0.28 +0.6 613,688 - DZA65_RS02855 0.29 -0.1 613,763 - DZA65_RS02855 0.43 +0.1 613,776 + DZA65_RS02855 0.46 -0.6 613,791 + DZA65_RS02855 0.49 +0.5 613,792 - DZA65_RS02855 0.49 -2.5 613,792 - DZA65_RS02855 0.49 -0.2 613,792 - DZA65_RS02855 0.49 +0.5 614,100 + +0.1 614,100 + +0.1 614,100 + -1.5 614,101 - +0.4 614,154 + -0.4 614,154 + -0.8 614,154 + -0.2 614,154 + -1.2 614,154 + -1.7 614,154 + +0.4
Or see this region's nucleotide sequence